BAC Information

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BAC

Clone NameB6Ng01-240O21
Chromosome16 (Build37)
Map Location 79,245,540 - 79,359,350
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039561, Cxadr, Btg3, D16Ertd472e, LOC100039605, 4930570E03Rik, Chodl, Prss7
Downstream geneEG383172, 1700066C05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240O21.bB6Ng01-240O21.g
ACCGA050972GA050973
length1,0001,153
definitionB6Ng01-240O21.b B6Ng01-240O21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,245,540 - 79,246,421)(79,358,196 - 79,359,350)
sequence
gaattcttttccagcttattactctgaggtagtttttgtctttgtcaccg
aggtaggtttcctctatgcctattgttaatagacagtcttttcctgtgct
agttctggtcactcaaccttagttttggttgggatttttcaaggaaattg
tttccttgtgagtatgatatctgaaaactcaagaactatctttactggtc
atgtctcttatgttcatggagtctgattaaaaaaaaaacgtattttcatt
gtttgttaggaatattttaaaatgtatttctgaaaattgcatgcacgtgc
acaatatatttttataacatctaccccatagttctctactactctaccta
gacaactcttgtctccctcctaacttttttaccgcttttattttttttat
taaatattttatttatttacatttcaaaggtcattccctttcctgatatc
cccccagaagcctccatcccatcccctcctgctgcttctatgagtgtgta
cccatactcacccacccactcccacctccctgccctcacattcccccata
ccggggcagtaggccttcaaggaactgagggcctcttctcccattgattc
ctgacaaggtcatcctctactatacatacagctggagccaagggtcccac
actttggtcttccttcttgagcttcatgttgtctgtgaattgaatcttat
gtattctgagcttttaagctaatgtccacttaatagtgagtgcatagcat
ttgagttcttttgttacctcactcaggatgatattttctaatcccatcca
tttgcctaagaatttcatgaattcattgtttttaatccctgagtagtact
ccactgtgtaaatgtaccacattttcggtatccatttctctgttgtagga
catctatctgggttctttccagcttctggttactataaataaggctgcta
tgaacatagtggagcatgtatccttgtcatatgttggagcatcctttgaa


gaattctcagttaatcagctacagacctgtatcctaaagcagcactgtta
gtgctggataaatagtaaattttgtgttctggaaatggctacataagtca
tgtcattttcatagccaaatatcaaactgataaactatcctacatatata
atatcaggcatatttttaagaaaattagatttaaaaaaatcacactttaa
aagaattggaaaacaatgaggaaaaagagaccccttctctctatacactc
atgcaattaagaaaggtgaagtggggactccctgagatcatgcctatctg
caaggaaggaactgaatccatcgctagcagtcagcatcagcaggggttct
gatgtacatttcctgtagtcttgaacttgagacacggacatgtttttaag
cccccatgtgtgttagtcagctatgagtattttagaaagctaagaaagta
ttcaattggaatttattgttttaagatctctagtcatatctatttggaaa
accaatactattttgaaagtttttatgttgataataaagttattttaatt
ttgaaaattactacttttagctcttgaaccctagttcattttttatagct
ttcttgtgactatatcatccacagtactttatagcataagggaagtaact
gagagatatacccccaacttcctccatgctttggaaaatatactatagta
agaaaaaaaaacacaacagcagcactatcttatattctcaaattgtttac
atttctaataattagtaaagcctacttctaatttatatgaagagtaaaga
gattctatattcaatttattgcaaacaaattaataaaggattcaaattgt
ctaacacaagcccctgtgtttccctagctactgaactgggcatacattga
gtgtgtgtgaggaaggagtatagagagagaaacagagtctctatttcctc
ataatgcagcccaaagaagtagacagaattacatccttatactctatgaa
gcccaaaagccaccatgtctcagagtgtcaccatggagggtactgtctcc
acatgaaaatctatgaagagaatagaacaaacattagttcatcttcaagt
tttactgaatcctcagatttgtaaccagaacagtggtgcgagcacgcctt
taa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_79245540_79246421
seq2: B6Ng01-240O21.b_44_925

seq1  GAATTCTTTTCCAGCTTATTACTCTGAGGTAGTTTTTGTCTTTGTCACCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCCAGCTTATTACTCTGAGGTAGTTTTTGTCTTTGTCACCG  50

seq1  AGGTAGGTTTCCTCTATGCCTATTGTTAATAGACAGTCTTTTCCTGTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGTTTCCTCTATGCCTATTGTTAATAGACAGTCTTTTCCTGTGCT  100

seq1  AGTTCTGGTCACTCAACCTTAGTTTTGGTTGGGATTTTTCAAGGAAATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGGTCACTCAACCTTAGTTTTGGTTGGGATTTTTCAAGGAAATTG  150

seq1  TTTCCTTGTGAGTATGATATCTGAAAACTCAAGAACTATCTTTACTGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTGTGAGTATGATATCTGAAAACTCAAGAACTATCTTTACTGGTC  200

seq1  ATGTCTCTTATGTTCATGGAGTCTGATTAAAAAAAAAACGTATTTTCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCTTATGTTCATGGAGTCTGATTAAAAAAAAAACGTATTTTCATT  250

seq1  GTTTGTTAGGAATATTTTAAAATGTATTTCTGAAAATTGCATGCACGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTAGGAATATTTTAAAATGTATTTCTGAAAATTGCATGCACGTGC  300

seq1  ACAATATATTTTTATAACATCTACCCCATAGTTCTCTACTACTCTACCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATATTTTTATAACATCTACCCCATAGTTCTCTACTACTCTACCTA  350

seq1  GACAACTCTTGTCTCCCTCCTAACTTTTTTACCGCTTTTATTTTTTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACTCTTGTCTCCCTCCTAACTTTTTTACCGCTTTTATTTTTTTTAT  400

seq1  TAAATATTTTATTTATTTACATTTCAAAGGTCATTCCCTTTCCTGATATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTTTATTTATTTACATTTCAAAGGTCATTCCCTTTCCTGATATC  450

seq1  CCCCCAGAAGCCTCCATCCCATCCCCTCCTGCTGCTTCTATGAGTGTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGAAGCCTCCATCCCATCCCCTCCTGCTGCTTCTATGAGTGTGTA  500

seq1  CCCATACTCACCCACCCACTCCCACCTCCCTGCCCTCACATTCCCCCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATACTCACCCACCCACTCCCACCTCCCTGCCCTCACATTCCCCCATA  550

seq1  CCGGGGCAGTAGGCCTTCAAGGAACTGAGGGCCTCTTCTCCCATTGATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGGCAGTAGGCCTTCAAGGAACTGAGGGCCTCTTCTCCCATTGATTC  600

seq1  CTGACAAGGTCATCCTCTACTATACATACAGCTGGAGCCAAGGGTCCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAAGGTCATCCTCTACTATACATACAGCTGGAGCCAAGGGTCCCAC  650

seq1  ACTTTGGTCTTCCTTCTTGAGCTTCATGTTGTCTGTGAATTGAATCTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGTCTTCCTTCTTGAGCTTCATGTTGTCTGTGAATTGAATCTTAT  700

seq1  GTATTCTGAGCTTTTAAGCTAATGTCCACTTAATAGTGAGTGCATAGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTGAGCTTTTAAGCTAATGTCCACTTAATAGTGAGTGCATAGCAT  750

seq1  TTGAGTTCTTTTGTTACCTCACTCAGGATGATATTTTCTAATCCCATCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTCTTTTGTTACCTCACTCAGGATGATATTTTCTAATCCCATCCA  800

seq1  TTTGCCTAAGAATTTCATGAATTCATTGTTTTTAATCCCTGAGTAGTACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTAAGAATTTCATGAATTCATTGTTTTTAATCCCTGAGTAGTACT  850

seq1  CCACTGTGTAAATGTACCACATTTTCGGTATC  882
      ||||||||||||||||||||||||||||||||
seq2  CCACTGTGTAAATGTACCACATTTTCGGTATC  882


seq1: chr16_79358196_79359350
seq2: B6Ng01-240O21.g_66_1218 (reverse)

seq1  TTAAAGGCGTGCTC-CACCACTGTCCTGGGTACAAAATCTTGAGATTCAG  49
      |||||||||||||| ||||||||| |||| ||| ||||||   |||||||
seq2  TTAAAGGCGTGCTCGCACCACTGTTCTGGTTAC-AAATCTGAGGATTCAG  49

seq1  T-AAACTTGAAAGATG-ACTTATGTTTGGTTCTATTTCTCTCAATTAGAT  97
      | ||||||| |||||| ||| |||||| |||||| ||||||  | |||||
seq2  TAAAACTTG-AAGATGAACTAATGTTT-GTTCTA-TTCTCTTCA-TAGAT  95

seq1  TTTCATGTGGAGACAGTACCCTCCATGGTGACACTCTTGAGACATGGT-G  146
      |||||||||||||||||||||||||||||||||||| ||||||||||| |
seq2  TTTCATGTGGAGACAGTACCCTCCATGGTGACACTC-TGAGACATGGTGG  144

seq1  CTTTTTGGCTTCATAAGAGTAT-AGGATGTAATTCTTGTCTACTTCTTTT  195
      ||||| |||||||| ||||||| |||||||||||| ||||||||||||| 
seq2  CTTTTGGGCTTCAT-AGAGTATAAGGATGTAATTC-TGTCTACTTCTTTG  192

seq1  GGCTGCATTATGAGGAAATAGAGACTCTGTTTCTCTCTCTATACTCCTTC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCATTATGAGGAAATAGAGACTCTGTTTCTCTCTCTATACTCCTTC  242

seq1  CTCACACACACTCAATGTATG-CCAGTTCAGTAGCTAGGGAAACACAGGG  294
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTCACACACACTCAATGTATGCCCAGTTCAGTAGCTAGGGAAACACAGGG  292

seq1  GCTTGTGTTAGACAATTTGAATCCTTTATTAATTTGTTTGCAATAAATTG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGTTAGACAATTTGAATCCTTTATTAATTTGTTTGCAATAAATTG  342

seq1  AATATAGAATCTCTTTACTCTTCATATAAATTAGAAGTAGGCTTTACTAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGAATCTCTTTACTCTTCATATAAATTAGAAGTAGGCTTTACTAA  392

seq1  TTATTAGAAATGTAAACAATTTGAGAATATAAGATAGTGCTGCTGTTGTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGAAATGTAAACAATTTGAGAATATAAGATAGTGCTGCTGTTGTG  442

seq1  TTTTTTTTTCTTACTATAGTATATTTTCCAAAGCATGGAGGAAGTTGGGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTCTTACTATAGTATATTTTCCAAAGCATGGAGGAAGTTGGGG  492

seq1  GTATATCTCTCAGTTACTTCCCTTATGCTATAAAGTACTGTGGATGATAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATCTCTCAGTTACTTCCCTTATGCTATAAAGTACTGTGGATGATAT  542

seq1  AGTCACAAGAAAGCTATAAAAAATGAACTAGGGTTCAAGAGCTAAAAGTA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAAGAAAGCTATAAAAAATGAACTAGGGTTCAAGAGCTAAAAGTA  592

seq1  GTAATTTTCAAAATTAAAATAACTTTATTATCAACATAAAAACTTTCAAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTTCAAAATTAAAATAACTTTATTATCAACATAAAAACTTTCAAA  642

seq1  ATAGTATTGGTTTTCCAAATAGATATGACTAGAGATCTTAAAACAATAAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTATTGGTTTTCCAAATAGATATGACTAGAGATCTTAAAACAATAAA  692

seq1  TTCCAATTGAATACTTTCTTAGCTTTCTAAAATACTCATAGCTGACTAAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATTGAATACTTTCTTAGCTTTCTAAAATACTCATAGCTGACTAAC  742

seq1  ACACATGGGGGCTTAAAAACATGTCCGTGTCTCAAGTTCAAGACTACAGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGGGGGCTTAAAAACATGTCCGTGTCTCAAGTTCAAGACTACAGG  792

seq1  AAATGTACATCAGAACCCCTGCTGATGCTGACTGCTAGCGATGGATTCAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTACATCAGAACCCCTGCTGATGCTGACTGCTAGCGATGGATTCAG  842

seq1  TTCCTTCCTTGCAGATAGGCATGATCTCAGGGAGTCCCCACTTCACCTTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCTTGCAGATAGGCATGATCTCAGGGAGTCCCCACTTCACCTTT  892

seq1  CTTAATTGCATGAGTGTATAGAGAGAAGGGGTCTCTTTTTCCTCATTGTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTGCATGAGTGTATAGAGAGAAGGGGTCTCTTTTTCCTCATTGTT  942

seq1  TTCCAATTCTTTTAAAGTGTGATTTTTTTAAATCTAATTTTCTTAAAAAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATTCTTTTAAAGTGTGATTTTTTTAAATCTAATTTTCTTAAAAAT  992

seq1  ATGCCTGATATTATATATGTAGGATAGTTTATCAGTTTGATATTTGGCTA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGATATTATATATGTAGGATAGTTTATCAGTTTGATATTTGGCTA  1042

seq1  TGAAAATGACATGACTTATGTAGCCATTTCCAGAACACAAAATTTACTAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATGACATGACTTATGTAGCCATTTCCAGAACACAAAATTTACTAT  1092

seq1  TTATCCAGCACTAACAGTGCTGCTTTAGGATACAGGTCTGTAGCTGATTA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCAGCACTAACAGTGCTGCTTTAGGATACAGGTCTGTAGCTGATTA  1142

seq1  ACTGAGAATTC  1155
      |||||||||||
seq2  ACTGAGAATTC  1153


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