BAC Information

Click to search

BAC

Clone NameB6Ng01-242F04
Chromosome16 (Build37)
Map Location 76,281,087 - 76,282,156
singlet/doubletsinglet
Overlap genenone
Upstream geneD930038D03Rik, Rbm11, Stch, LOC546667, Samsn1, 4930578N18Rik, LOC100039457
Downstream geneNrip1, LOC100039316, 1700063K16Rik, LOC665120, Usp25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242F04.bB6Ng01-242F04.g
ACCGA052000GA052001
length1,1951,084
definitionB6Ng01-242F04.b B6Ng01-242F04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaggactaggggattgcatcgaccccccggtgtggcgcccttga
tgtcactggagaccgctgaggaatcataacaggggccctgattccgaggg
gtgtttcctcgcttaagggaaattaggtcccatgatgatgatggcttcca
gtatgcctgtccagtggtctcacagccccatttgccacagtagccctctc
tcggccctccacaccctgttggtacagtatgcccggggcaaacatagaag
tcaaatgttcttgccctttttcttcccccgggagtgcgacacccgagtcc
agtctcatcccagtcgtcccctattaaatcgcacaagtcaaagtacagtt
taggaaaggcatcggtcattgtccccaggagggaggtagcattagctgtt
tgtcctgtcattaagttggtaactctctaagtaacattgaagacctgatg
agggctgtcatgttgtactgatactcctgcccttattaagatccccagga
ctattagggggccccacgggttaatcttatctttaaggggttttgagaac
gctggaccttccatgtcggtcctgatgctgttccggccggaggggttgtc
gccgcttttatgtgagcggcgtggatccacgcagcgatgccgtctacttt
gagagcggtgggggtggtcagcaggacggtgtagggtcctttccagcgag
gttccaagtttttagtctggtgccggcgtacccacacggtgtcgccgaca
cggaaggggtgtggtatcactggctggtctagctggtcctgataggcagc
ggccagtggcttccagacctctcgttgtactgcttggagggcctgtaagt
gagcttggagagaggggctattagtaaactttgacatttcaggatcatgg
aaattaacaaggggcgggggcgccccatacaggatttcatacggagtgag
tccatgggggccttggagtggttgcgggctcggtagagggctaaaggaag
taggagtaccccagtcttctagtgcagttgcagcgttaatttgggttcaa
gtctcttgatgtcttattcaatcttcctactgacctgaactcttggggtc
tgatagcacatgttagtttcatcaattcctagtagcttgcacgacgtact
accttgggaagaacgaagagcataggctccatttaatcatagtac
gaattcatttcctatcccttgagaagaaataagatcttgtctgaaacttc
gttgcacccagaatatttgtgactagccctgaaaatgtaaatctagagta
tattcaggatgagtaggtgttttcggtgacgatgaaccagttcactctct
ctagtgaagcagtgctgataaaggccattcccaatttccactcgttataa
gactggaggttgtaaggaagagaggagggatgtctgccgtcaaggctttt
taacataaaagggatattttggagttagtccttaattgaaggaccatgag
gacagatggctatagtaagaatgagaacagcagttacaagtccagcatcc
ctgcttttgcttaagtgaggtcatttccttatgtcccagatttgactttc
tggactgaaaagggaaaaaaaaaaaataagtttttgctttttttgcttga
gaaaagcaggatgtcttttaatcttaactatttaaaggataatcctttct
tcctacatcaaagataagaagtctgttgggaatctatacatttaaatcag
atttatttctagtgtgtttttgtcctggggtaagaatgtaggctcctgga
aaccatggacttcatggtgatcaaaagccgtataggtaaaatttggatct
gaaatgtgccccaagggtggcactgctgagaaggggtggagcctgagaat
acgctatgctctctagcacgagctcttcatggcatcccttcatctcttcc
tggccacaaggaggttgctttgccctgcctcgtgctccccatcagcttgt
ggcgtcacagggcccaaagcaataaggccatcgaatgatcactgaccaac
tctaaaactacaagccaaaataagccattctctgtcataagacaatttgt
gtccagtgttcattacacgctcactattttgcaatgtttcagtggctttt
gcagtatctatcacatcaaaatagggtttttatttaaaaagttgttgcaa
gaaagcagccaaatgttttgccaataacaccacaatgccaagttaccttc
tatgagtaaccactttgataactgtagtacattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_76281087_76282156
seq2: B6Ng01-242F04.g_69_1152 (reverse)

seq1  AAATGTACTACAGTAATCAAAGT-GTTACTCATAGAAGGGAAACTTGCA-  48
      |||||||||||||| |||||||| ||||||||||||||| ||  | ||| 
seq2  AAATGTACTACAGTTATCAAAGTGGTTACTCATAGAAGGTAACTTGGCAT  50

seq1  TGTGGTGT--ATGGC-AAACA-TTGGCTGC-TTCTTGCA--CACTTTTTA  91
      ||||||||   |||| ||||| |||||||| ||||||||   ||||||||
seq2  TGTGGTGTTATTGGCAAAACATTTGGCTGCTTTCTTGCAACAACTTTTTA  100

seq1  AATAAAA--CCTATTTTGATGTGATAGATACTGC-AAAGCCACTGAAACA  138
      |||||||  ||||||||||||||||||||||||| |||||||||||||||
seq2  AATAAAAACCCTATTTTGATGTGATAGATACTGCAAAAGCCACTGAAACA  150

seq1  TTGCAAAATAGTGAGCGTGTAATGAACACTGGACAC-AATTGTCTTATGA  187
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTGCAAAATAGTGAGCGTGTAATGAACACTGGACACAAATTGTCTTATGA  200

seq1  CAGAGAATGGCTTATTTTGGCTTGTAGTTTTAGAGTTGGTCAGTGATCAT  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAATGGCTTATTTTGGCTTGTAGTTTTAGAGTTGGTCAGTGATCAT  250

seq1  TCGATGGCCTTATTGCTTTGGG-CCTGTGACGCCACAAGCTGATGGGGAG  286
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCGATGGCCTTATTGCTTTGGGCCCTGTGACGCCACAAGCTGATGGGGAG  300

seq1  CACGAGGCAGGGCAAAGCAACCTCCTTGTGGCCAGGAAGAGATGAAGGGA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGGCAGGGCAAAGCAACCTCCTTGTGGCCAGGAAGAGATGAAGGGA  350

seq1  TGCCATGAAGAGCTCGTGCTAGAGAGCATAGCGTATTCTCAGGCTCCACC  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGAAGAGCTCGTGCTAGAGAGCATAGCGTATTCTCAGGCTCCACC  400

seq1  CCTTCTCAGCAGTGCCACCCTTGGGGCACATTTCAGATCCAAATTTTACC  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCAGCAGTGCCACCCTTGGGGCACATTTCAGATCCAAATTTTACC  450

seq1  TATACGGCTTTTGATCACCATGAAGTCCATGGTTTCCAGGAGCCTACATT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACGGCTTTTGATCACCATGAAGTCCATGGTTTCCAGGAGCCTACATT  500

seq1  CTTACCCCAGGACAAAAACACACTAGAAATAAATCTGATTTAAATGTATA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCCCAGGACAAAAACACACTAGAAATAAATCTGATTTAAATGTATA  550

seq1  GATTCCCAACAGACTTCTTATCTTTGATGTAGGAAGAAAGGATTATCCTT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCCAACAGACTTCTTATCTTTGATGTAGGAAGAAAGGATTATCCTT  600

seq1  TAAATAGTTAAGATTAAAAGACATCCTGCTTTTCTCAAGCAAAAAAAGCA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGTTAAGATTAAAAGACATCCTGCTTTTCTCAAGCAAAAAAAGCA  650

seq1  AAAACTTATTTTTTTTTTTTCCCTTTTCAGTCCAGAAAGTCAAATCTGGG  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTATTTTTTTTTTTTCCCTTTTCAGTCCAGAAAGTCAAATCTGGG  700

seq1  ACATAAGGAAATGACCTCACTTAAGCAAAAGCAGGGATGCTGGACTTGTA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGGAAATGACCTCACTTAAGCAAAAGCAGGGATGCTGGACTTGTA  750

seq1  ACTGCTGTTCTCATTCTTACTATAGCCATCTGTCCTCATGGTCCTTCAAT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGTTCTCATTCTTACTATAGCCATCTGTCCTCATGGTCCTTCAAT  800

seq1  TAAGGACTAACTCCAAAATATCCCTTTTATGTTAAAAAGCCTTGACGGCA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGACTAACTCCAAAATATCCCTTTTATGTTAAAAAGCCTTGACGGCA  850

seq1  GACATCCCTCCTCTCTTCCTTACAACCTCCAGTCTTATAACGAGTGGAAA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCCCTCCTCTCTTCCTTACAACCTCCAGTCTTATAACGAGTGGAAA  900

seq1  TTGGGAATGGCCTTTATCAGCACTGCTTCACTAGAGAGAGTGAACTGGTT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAATGGCCTTTATCAGCACTGCTTCACTAGAGAGAGTGAACTGGTT  950

seq1  CATCGTCACCGAAAACACCTACTCATCCTGAATATACTCTAGATTTACAT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGTCACCGAAAACACCTACTCATCCTGAATATACTCTAGATTTACAT  1000

seq1  TTTCAGGGCTAGTCACAAATATTCTGGGTGCAACGAAGTTTCAGACAAGA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGGCTAGTCACAAATATTCTGGGTGCAACGAAGTTTCAGACAAGA  1050

seq1  TCTTATTTCTTCTCAAGGGATAGGAAATGAATTC  1070
      ||||||||||||||||||||||||||||||||||
seq2  TCTTATTTCTTCTCAAGGGATAGGAAATGAATTC  1084