BAC Information

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BAC

Clone NameB6Ng01-242L23
Chromosome16 (Build37)
Map Location 89,265,917 - 89,490,734
singlet/doubletdoublet
Overlap geneLOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2
Upstream geneGrik1, EG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652
Downstream gene5430433J05Rik, Tiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242L23.bB6Ng01-242L23.g
ACCGA052311GA052312
length5211,097
definitionB6Ng01-242L23.b B6Ng01-242L23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,265,917 - 89,266,443)(89,489,633 - 89,490,734)
sequence
aagataatctgtcacatcctatttttctcaaaactacatcaagttaaatt
tccatcaacaattgagaagggtgccctcttctattgatctttcttctcgc
cagtattaactacctaacagttttgggttgaaatatcatcttgtttttta
attggatctcagagatattagtgaagtagaacattaccctgtccatttgt
ccacctgtatctttgcctttgaaaaacacctgttctaaatctcagcatat
ttgtgtaaccacttatattcttttagttggttagcttagctatgtacaac
atgcccaacccatatacaatagttttgtttaaggaactttcttatcttga
tctctgaaaagttttttatttcattctttttttactcatttattttattt
ctgacatcacgcgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgg
gatgaaaccatgtgtatatgtaaatgtacaggaccatgtgctagggtgtt
cttttgtgagggtttaggagc
gaattctcctctccgaggctctgccaattcacccggagtatgtgttgtga
gcattcatggctagaacttatttcctgggatgcatctctgttgtgacatc
cagcccaggaaggatgattgagggaacagtttgaagtgatggagccagaa
attcatttatgggaaagaaaaatatagaagtttgtcaggcagctaagaat
acagtattcgctcctggatttcctaacgtttgttgttcttgttggcattt
aatttcttttgtgtttttaccttcgcactgattctttatttatgttgttt
tcctatttgtgaggaaggctcccgataagtacgaagttcagactgtgtaa
catgaatcctctttgagcatcatgtattagaaaaaaaagctttcatatat
tcagttgggttgggttggccattatttttaaaagtgacttatggagaaac
aatgggttttcctgaaaatttctctttgcatttttttttttttttttggt
ataaattgagaatagaatccaggctattttctattaaaagggttatgctt
atttaaaaggatggcatatataaattctttatcactcatatacaaagctg
tatattacatcaccaagggcaaaaatcagcatgtgtcagattcagtgagt
gggagaggaatttgtttaatcaggcttttataattgaaccttggcattga
ttcaaaactttttttttctgttatacaacacattttgtttgattttattc
ttttcctaacacacctgcatttttgttattagatgaaataatattatgat
ggttacaatatattataactcgttctaaggattttaggaaatgttttcca
gtatcttaacattcatgaatgaggctcaggtaattttctggcccctttag
ttgtacatcacatgaagaacttgaattttaagttctgaatcagtataggc
agcaccctacttatggagcaggtggtggggcactctgtgttttcaaattg
gctcttgctgtattaaccattagtggttagaacaactggcatagctttga
gctcctcctacgagtctgattttttgtcctggattaacctatggccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_89265917_89266443
seq2: B6Ng01-242L23.b_45_571

seq1  GAATTCAAGATAATCTGTCACATCCTATTTTTCTCAAAACTACATCAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGATAATCTGTCACATCCTATTTTTCTCAAAACTACATCAAGT  50

seq1  TAAATTTCCATCAACAATTGAGAAGGGTGCCCTCTTCTATTGATCTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTCCATCAACAATTGAGAAGGGTGCCCTCTTCTATTGATCTTTCT  100

seq1  TCTCGCCAGTATTAACTACCTAACAGTTTTGGGTTGAAATATCATCTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGCCAGTATTAACTACCTAACAGTTTTGGGTTGAAATATCATCTTGT  150

seq1  TTTTTAATTGGATCTCAGAGATATTAGTGAAGTAGAACATTACCCTGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATTGGATCTCAGAGATATTAGTGAAGTAGAACATTACCCTGTCC  200

seq1  ATTTGTCCACCTGTATCTTTGCCTTTGAAAAACACCTGTTCTAAATCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCCACCTGTATCTTTGCCTTTGAAAAACACCTGTTCTAAATCTCA  250

seq1  GCATATTTGTGTAACCACTTATATTCTTTTAGTTGGTTAGCTTAGCTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTTGTGTAACCACTTATATTCTTTTAGTTGGTTAGCTTAGCTATG  300

seq1  TACAACATGCCCAACCCATATACAATAGTTTTGTTTAAGGAACTTTCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACATGCCCAACCCATATACAATAGTTTTGTTTAAGGAACTTTCTTA  350

seq1  TCTTGATCTCTGAAAAGTTTTTTATTTCATTCTTTTTTTACTCATTTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATCTCTGAAAAGTTTTTTATTTCATTCTTTTTTTACTCATTTATT  400

seq1  TTATTTCTGACATCACGCGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTGACATCACGCGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  450

seq1  GTGTTGCATGAGACCATGTGTATATGTAAATGTACAGGACCATGTGCTAG  500
      |||| | |||| ||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGATGAAACCATGTGTATATGTAAATGTACAGGACCATGTGCTAG  500

seq1  GGTGTTCTTTTGGGAGGGTTTTGGAGC  527
      |||||||||||| |||||||| |||||
seq2  GGTGTTCTTTTGTGAGGGTTTAGGAGC  527

seq1: chr16_89489633_89490734
seq2: B6Ng01-242L23.g_67_1163 (reverse)

seq1  GGGCCATAGGTTAATTCCAAGGACAAAAAAATCAGACTCGTA-GAGAAAC  49
      |||||||||||||||  | ||||| ||||||||||||||||| ||| | |
seq2  GGGCCATAGGTTAAT--CCAGGAC-AAAAAATCAGACTCGTAGGAGGAGC  47

seq1  TCAAAGCTATGCCAG-TGTTCTAACCACTAATTGTTTAATTACAGCAGAA  98
      ||||||||||||||| |||||||||||||||| |||  | |||||||  |
seq2  TCAAAGCTATGCCAGTTGTTCTAACCACTAATGGTT--AATACAGCAAGA  95

seq1  GCAATTTTGAAAACACAGAGTTGCCCCACCACCCTGCT-CATAAGTAGGG  147
      || | ||||||||||||||| |||||||||| |||||| |||||||||||
seq2  GCCAATTTGAAAACACAGAG-TGCCCCACCA-CCTGCTCCATAAGTAGGG  143

seq1  TGCTGCCTATACTGATTCAGAACTTAAAATTCAAGTTCTTCATGTGATGT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCTATACTGATTCAGAACTTAAAATTCAAGTTCTTCATGTGATGT  193

seq1  ACAACTAAAGGGGCCAGAAAATTACCCTGAGCCTCATTCATGAATGTTAA  247
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACAACTAAAGGGGCCAGAAAATTA-CCTGAGCCTCATTCATGAATGTTAA  242

seq1  GATACTGGAAAACATTTCCTAAAATCCTTAGAACGAGTTATAATATATTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGGAAAACATTTCCTAAAATCCTTAGAACGAGTTATAATATATTG  292

seq1  TAACCATCATAATATTATTTCATCTAATAACAAAAATGCAGGTGTGTTAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATCATAATATTATTTCATCTAATAACAAAAATGCAGGTGTGTTAG  342

seq1  GAAAAGAATAAAATCAAACAAAATGTGTTGTATAACAGAAAAAAAAAGTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAATAAAATCAAACAAAATGTGTTGTATAACAGAAAAAAAAAGTT  392

seq1  TTGAATCAATGCCAAGGTTCAATTATAAAAGCCTGATTAAACAAATTCCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATCAATGCCAAGGTTCAATTATAAAAGCCTGATTAAACAAATTCCT  442

seq1  CTCCCACTCACTGAATCTGACACATGCTGATTTTTGCCCTTGGTGATGTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACTCACTGAATCTGACACATGCTGATTTTTGCCCTTGGTGATGTA  492

seq1  ATATACAGCTTTGTATATGAGTGATAAAGAATTTATATATGCCATCCTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACAGCTTTGTATATGAGTGATAAAGAATTTATATATGCCATCCTTT  542

seq1  TAAATAAGCATAACCCTTTTAATAGAAAATAGCCTGGATTCTATTCTCAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAGCATAACCCTTTTAATAGAAAATAGCCTGGATTCTATTCTCAA  592

seq1  TTTATACCAAAAAAAAAAAAAAAAATGCAAAGAGAAATTTTCAGGAAAAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACCAAAAAAAAAAAAAAAAATGCAAAGAGAAATTTTCAGGAAAAC  642

seq1  CCATTGTTTCTCCATAAGTCACTTTTAAAAATAATGGCCAACCCAACCCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTTTCTCCATAAGTCACTTTTAAAAATAATGGCCAACCCAACCCA  692

seq1  ACTGAATATATGAAAGCTTTTTTTTCTAATACATGATGCTCAAAGAGGAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATATATGAAAGCTTTTTTTTCTAATACATGATGCTCAAAGAGGAT  742

seq1  TCATGTTACACAGTCTGAACTTCGTACTTATCGGGAGCCTTCCTCACAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTACACAGTCTGAACTTCGTACTTATCGGGAGCCTTCCTCACAAA  792

seq1  TAGGAAAACAACATAAATAAAGAATCAGTGCGAAGGTAAAAACACAAAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAACAACATAAATAAAGAATCAGTGCGAAGGTAAAAACACAAAAG  842

seq1  AAATTAAATGCCAACAAGAACAACAAACGTTAGGAAATCCAGGAGCGAAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAATGCCAACAAGAACAACAAACGTTAGGAAATCCAGGAGCGAAT  892

seq1  ACTGTATTCTTAGCTGCCTGACAAACTTCTATATTTTTCTTTCCCATAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATTCTTAGCTGCCTGACAAACTTCTATATTTTTCTTTCCCATAAA  942

seq1  TGAATTTCTGGCTCCATCACTTCAAACTGTTCCCTCAATCATCCTTCCTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTCTGGCTCCATCACTTCAAACTGTTCCCTCAATCATCCTTCCTG  992

seq1  GGCTGGATGTCACAACAGAGATGCATCCCAGGAAATAAGTTCTAGCCATG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGATGTCACAACAGAGATGCATCCCAGGAAATAAGTTCTAGCCATG  1042

seq1  AATGCTCACAACACATACTCCGGGTGAATTGGCAGAGCCTCGGAGAGGAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTCACAACACATACTCCGGGTGAATTGGCAGAGCCTCGGAGAGGAG  1092

seq1  AATTC  1102
      |||||
seq2  AATTC  1097