BAC Information

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BAC

Clone NameB6Ng01-243D23
Chromosome16 (Build37)
Map Location 27,803,126 - 27,926,761
singlet/doubletdoublet
Overlap genenone
Upstream geneGm606, Ostn, Uts2d, Ccdc50
Downstream geneFgf12, 1600021P15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243D23.bB6Ng01-243D23.g
ACCGA052682GA052683
length1,1851,121
definitionB6Ng01-243D23.b B6Ng01-243D23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,925,582 - 27,926,761)(27,803,126 - 27,804,138)
sequence
gaattcctgttcaaatgaccttataaaaagtggcctgcttctcctccctc
taaattgtagtactttcttccattgcattaaaaaatgtatttttaaagta
aaaactccctttggatgattgaactacaaagaatctgtgggtcacagagt
ctgccagaagaaatgctgtcactgggaggaagattaatggtgtaacagca
gtgcaggcttgaccctctgataatccccgacctcagtggaatgactacct
caaaattactggccctgtgatttacttactgcaatgaagtagagccagga
atggaattttcaaatgctacccccccccctaaaaaggaattcaaatgcat
ttagttttgagccatctggtgatacacaaaacaatgcatatatttatctg
ggaggagcgagtgtacaccaagccatgcatatttatctgagaggggtagg
tatatgccaaaccatgtgcatttttatttgagtcatatttctggaagtag
tagacagattacgttattatgggaacctctaaacagtgtagtattttatc
aggattttatttttgaggtcctataaaaatagacttatcacagcagcctc
tagtaacatgaatggtgaaggacaaaaggaagccaagaaacatctctgtt
aaaaaacagatttttttttttttaggccctcagtagaccatatgtcactg
cttaatctacagctctcaaaatgttcatgggcaaggtataaataaacaag
gctatgccttccaaccagaagattttagctgaagcaaaacattcagtgtg
ggtctccagatttgatcctcggttataggcttcacgtagtggctggaaag
tctcctcagtatcacaccagactctggaaatctttaacatcttgttttgg
ggaaagggagtggaggttctgcatttctcagctcttcccggtgctatgtt
gatttgcagagcatctttgccgaggcatgtgtgaacattttaacagggca
cagccccttctccctgtctgttgttcttctgttctcaggctgctgcaaga
tggcagcacagaagtgttaagaacttgacttagagggtgaacagaacaaa
ggcaactgggcttcactatttcctggacaatggtgatacttagagacggt
tgctggtggggcgtaaagggtccaacgtgcctttc

gaattccagggtgactatcatcctctatgttttacagagtggcatatctc
cttgaataattgagtcagcaatgcaatgatatagataggaccccaatagc
tgatgtagtagactatggcaatatatttcactttgtgaaaggagaaagta
tgggacaattgtaaactggttgagtgtctactgtgagacctttgatgtag
gcataaaaaggtacaactgatgcttatctgtatgataggaatgaatttgt
ctacctaaaggaagaactgcaatggggaagaaaaaaacttggtgatgtta
ttcttaccattacaatcagacttggtaggaagccaggatataatggagaa
agagatgaagatatggcattgtctttcagctgacatggttccaaaggaaa
aatataggataatgatccctttctgggacacccaaacgtgggatctacag
gaagaatcagacagtaagttgtgagtaaggtgtgagaggaaaaatacatc
tctcagatctaccctttaatgcaaaagaaggaaaaaaaatcattggctcc
aactgtctgttttagtaataatctggttgagaaaactgaaataatcacag
aattgtctggattttaacagtttgatgggagccttatatgctgcagtggg
ccttgctaaaagtttgtttttgttatccccttagcatcccaagattaatt
ggcatatgcttgggaaagaaacaggcctccagagatcctataccctctac
gaatagacttccttatctaacgcttaacttctaatatctcatagaattgg
gaaatcccatggcaagacagtaaaaacatcagctacagaacttcaatgga
agcactctgcatcattgggaaaagtcagtactaaaagctctaaaggtctt
tggtgaaaaatcctactacaggagtaaattacctccctacacattattgg
gcaatgagtccttatgaatccacatgttaaaagcattgtctgcgtaccag
actagaatgcattactgggatttatgaagatatttgtgtttttggttgta
gacacagtgaaatctcatcctggatccaagcctctgtccctccaatgctt
ctacaggttggaatgcactga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_27925582_27926761
seq2: B6Ng01-243D23.b_45_1229 (reverse)

seq1  GAAA-GCACGTTG--ACCTCTTCGCCCCACCAGCAACACGTTCTCTATGT  47
      |||| ||||||||   ||| | ||||||||||||||| || |||||| | 
seq2  GAAAGGCACGTTGGACCCTTTACGCCCCACCAGCAAC-CG-TCTCTAAG-  47

seq1  TATCAC--ATGTCCAGGGAAATAGTGAAAGCCAGT--GCTTTG-TCTG-T  91
      ||||||   |||||| ||||||||||||  |||||   ||||| |||| |
seq2  TATCACCATTGTCCA-GGAAATAGTGAAGCCCAGTTGCCTTTGTTCTGTT  96

seq1  CA-CCTCTAAGTCAAG-TCTTAACACTTCTGTGCTTCCCTTCCTGCAGCA  139
      || ||||||||||||| ||||||||||||||||| | || || |||||||
seq2  CACCCTCTAAGTCAAGTTCTTAACACTTCTGTGC-TGCCATCTTGCAGCA  145

seq1  GCCTGAGAAACAGAAGAAACAAACAGACAGGGAGAA-GGGCTGTGCCCTG  188
      ||||||| ||||||||||   ||||||||||||||| |||||||||||||
seq2  GCCTGAG-AACAGAAGAA--CAACAGACAGGGAGAAGGGGCTGTGCCCTG  192

seq1  TTAAAATGTTCACACATGCCTCGGCAAAGATGCTCTGCAAATCAACATAG  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGTTCACACATGCCTCGGCAAAGATGCTCTGCAAATCAACATAG  242

seq1  CACCGGGAAGAGCTGAGAAATGCAGAACCTCCACTCCC-TTCCCCAAAAC  287
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CACCGGGAAGAGCTGAGAAATGCAGAACCTCCACTCCCTTTCCCCAAAAC  292

seq1  AAGATGTTAAAGATTTCCAGAGTCTGGTGTGATACTGAGGAGACTTTCCA  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTTAAAGATTTCCAGAGTCTGGTGTGATACTGAGGAGACTTTCCA  342

seq1  GCCACTACGTGAAGCCTATAACCGAGGATCAAATCTGGAGACCCACACTG  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTACGTGAAGCCTATAACCGAGGATCAAATCTGGAGACCCACACTG  392

seq1  AATGTTTTGCTTCAGCTAAAATCTTCTGGTTGGAAGGCATAGCCTTGTTT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTGCTTCAGCTAAAATCTTCTGGTTGGAAGGCATAGCCTTGTTT  442

seq1  ATTTATACCTTGCCCATGAACATTTTGAGAGCTGTAGATTAAGCAGTGAC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATACCTTGCCCATGAACATTTTGAGAGCTGTAGATTAAGCAGTGAC  492

seq1  ATATGGTCTACTGAGGGCCTAAAAAAAAAAAAATCTGTTTTTTAACAGAG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTCTACTGAGGGCCTAAAAAAAAAAAAATCTGTTTTTTAACAGAG  542

seq1  ATGTTTCTTGGCTTCCTTTTGTCCTTCACCATTCATGTTACTAGAGGCTG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCTTGGCTTCCTTTTGTCCTTCACCATTCATGTTACTAGAGGCTG  592

seq1  CTGTGATAAGTCTATTTTTATAGGACCTCAAAAATAAAATCCTGATAAAA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATAAGTCTATTTTTATAGGACCTCAAAAATAAAATCCTGATAAAA  642

seq1  TACTACACTGTTTAGAGGTTCCCATAATAACGTAATCTGTCTACTACTTC  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACACTGTTTAGAGGTTCCCATAATAACGTAATCTGTCTACTACTTC  692

seq1  CAGAAATATGACTCAAATAAAAATGCACATGGTTTGGCATATACCTACCC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATATGACTCAAATAAAAATGCACATGGTTTGGCATATACCTACCC  742

seq1  CTCTCAGATAAATATGCATGGCTTGGTGTACACTCGCTCCTCCCAGATAA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGATAAATATGCATGGCTTGGTGTACACTCGCTCCTCCCAGATAA  792

seq1  ATATATGCATTGTTTTGTGTATCACCAGATGGCTCAAAACTAAATGCATT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGCATTGTTTTGTGTATCACCAGATGGCTCAAAACTAAATGCATT  842

seq1  TGAATTCCTTTTTAGGGGGGGGGGTAGCATTTGAAAATTCCATTCCTGGC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCCTTTTTAGGGGGGGGGGTAGCATTTGAAAATTCCATTCCTGGC  892

seq1  TCTACTTCATTGCAGTAAGTAAATCACAGGGCCAGTAATTTTGAGGTAGT  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTCATTGCAGTAAGTAAATCACAGGGCCAGTAATTTTGAGGTAGT  942

seq1  CATTCCACTGAGGTCGGGGATTATCAGAGGGTCAAGCCTGCACTGCTGTT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCACTGAGGTCGGGGATTATCAGAGGGTCAAGCCTGCACTGCTGTT  992

seq1  ACACCATTAATCTTCCTCCCAGTGACAGCATTTCTTCTGGCAGACTCTGT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATTAATCTTCCTCCCAGTGACAGCATTTCTTCTGGCAGACTCTGT  1042

seq1  GACCCACAGATTCTTTGTAGTTCAATCATCCAAAGGGAGTTTTTACTTTA  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCACAGATTCTTTGTAGTTCAATCATCCAAAGGGAGTTTTTACTTTA  1092

seq1  AAAATACATTTTTTAATGCAATGGAAGAAAGTACTACAATTTAGAGGGAG  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACATTTTTTAATGCAATGGAAGAAAGTACTACAATTTAGAGGGAG  1142

seq1  GAGAAGCAGGCCACTTTTTATAAGGTCATTTGAACAGGAATTC  1180
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCAGGCCACTTTTTATAAGGTCATTTGAACAGGAATTC  1185


seq1: chr16_27803126_27804138
seq2: B6Ng01-243D23.g_174_1188

seq1  AGTAGACTATGGCAATATATTTCACTTTGTGAAAGGAGAAAGTATGGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGACTATGGCAATATATTTCACTTTGTGAAAGGAGAAAGTATGGGAC  50

seq1  AATTGTAAACTGGTTGAGTGTCTACTGTGAGACCTTTGATGTAGGCATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTAAACTGGTTGAGTGTCTACTGTGAGACCTTTGATGTAGGCATAA  100

seq1  AAAGGTACAACTGATGCTTATCTGTATGATAGGAATGAATTTGTCTACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTACAACTGATGCTTATCTGTATGATAGGAATGAATTTGTCTACCT  150

seq1  AAAGGAAGAACTGCAATGGGGAAGAAAAAAACTTGGTGATGTTATTCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGAACTGCAATGGGGAAGAAAAAAACTTGGTGATGTTATTCTTA  200

seq1  CCATTACAATCAGACTTGGTAGGAAGCCAGGATATAATGGAGAAAGAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTACAATCAGACTTGGTAGGAAGCCAGGATATAATGGAGAAAGAGAT  250

seq1  GAAGATATGGCATTGTCTTTCAGCTGACATGGTTCCAAAGGAAAAATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATATGGCATTGTCTTTCAGCTGACATGGTTCCAAAGGAAAAATATA  300

seq1  GGATAATGATCCCTTTCTGGGACACCCAAACGTGGGATCTACAGGAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAATGATCCCTTTCTGGGACACCCAAACGTGGGATCTACAGGAAGAA  350

seq1  TCAGACAGTAAGTTGTGAGTAAGGTGTGAGAGGAAAAATACATCTCTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACAGTAAGTTGTGAGTAAGGTGTGAGAGGAAAAATACATCTCTCAG  400

seq1  ATCTACCCTTTAATGCAAAAGAAGGAAAAAAAATCATTGGCTCCAACTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACCCTTTAATGCAAAAGAAGGAAAAAAAATCATTGGCTCCAACTGT  450

seq1  CTGTTTTAGTAATAATCTGGTTGAGAAAACTGAAATAATCACAGAATTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTAGTAATAATCTGGTTGAGAAAACTGAAATAATCACAGAATTGT  500

seq1  CTGGATTTTAACAGTTTGATGGGAGCCTTATATGCTGCAGTGGGCCTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTTTAACAGTTTGATGGGAGCCTTATATGCTGCAGTGGGCCTTGC  550

seq1  TAAAAGTTTGTTTTTGTTATCCCCTTAGCATCCCAAGATTAATTGGCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTTTGTTTTTGTTATCCCCTTAGCATCCCAAGATTAATTGGCATA  600

seq1  TGCTTGGGAAAGAAACAGGCCTCCAGAGATCCTATACCCTCTACGAATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGGAAAGAAACAGGCCTCCAGAGATCCTATACCCTCTACGAATAG  650

seq1  ACTTCCTTATCTAACGCTTAACTTCTAATATCTCATAGAATTGGGAAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTTATCTAACGCTTAACTTCTAATATCTCATAGAATTGGGAAATC  700

seq1  CCATGGCAAGACAGTAAAAACATCAGCTACAGAACTTCAATGGAAGCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCAAGACAGTAAAAACATCAGCTACAGAACTTCAATGGAAGCACT  750

seq1  CTGCATCATT-GGAAAAGTCAGTACTAAAAGCTCT-AAGGTCTTTGGTGA  798
      |||||||||| |||||||||||||||||||||||| ||||||||||||||
seq2  CTGCATCATTGGGAAAAGTCAGTACTAAAAGCTCTAAAGGTCTTTGGTGA  800

seq1  AAAATCCTACTACAGGAGTAAATTACCTCCCTACACATTATTGGGCAATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCTACTACAGGAGTAAATTACCTCCCTACACATTATTGGGCAATG  850

seq1  AGGTCCTTATGAATCCACATGTTAAAAGCATTGTCTGCGTACCAGAACTA  898
      | ||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  A-GTCCTTATGAATCCACATGTTAAAAGCATTGTCTGCGTACCAG-ACTA  898

seq1  GAATGCATTACT-GGATTTATGAAGATATTTTGTG-TTTTGGTTGTAGGA  946
      |||||||||||| ||||||||||||||| |||||| ||||||||||| ||
seq2  GAATGCATTACTGGGATTTATGAAGATA-TTTGTGTTTTTGGTTGTA-GA  946

seq1  CACAGTGAAA-CCCATCCTGGATCCCAAAGCTCTGTTCCCCCATGGCTTC  995
      |||||||||| | |||||||||| ||||  |||||| || |||  |||||
seq2  CACAGTGAAATCTCATCCTGGAT-CCAAGCCTCTGTCCCTCCAATGCTTC  995

seq1  TACAG--TGGAATGCACTGA  1013
      |||||  |||||||||||||
seq2  TACAGGTTGGAATGCACTGA  1015


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