BAC Information

Click to search

BAC

Clone NameB6Ng01-243M15
Chromosome16 (Build37)
Map Location 36,837,682 - 36,956,251
singlet/doubletdoublet
Overlap geneEaf2, Iqcb1, LOC628101, Golgb1, Hcls1
Upstream geneParp14, LOC667133, LOC100043217, Dtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023
Downstream geneFbxo40, LOC100043252, Polq, Stxbp5l, Gtf2e1, Rabl3, Hgd, Ndufb4, LOC100043709, Fstl1, LOC100043264, Lrrc58, Gpr156, LOC100043271
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243M15.bB6Ng01-243M15.g
ACCGA053081GA053082
length9591,102
definitionB6Ng01-243M15.b B6Ng01-243M15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,955,294 - 36,956,251)(36,837,682 - 36,838,785)
sequence
gaattcatactccttagatgttgaagcccagcacaccaggctcaggaccc
aggtccaagagttccattttgcttctggcttctctcttcccttgtaccca
ctttaccgtagagacacccttgagaccatggtgtcctggggtttacctta
tccactcggtctttctggattccatattggccaccaaagcccttggcata
atctgtgggaaagaaaattctgagagtgaaaacaggagatgagaaggctg
ggaattggtagggagagggagcagcaaggattgggagataggaatatgga
agtggcagagaaagaggaagaaatgtcagaagtcagagagagagagagag
atggatgatgggaagaaaataaaaagggtcagggtatgggggttgggaga
gaaaaaaaggaatggaaagagacaaacacaaaagtaatggctgccaaggc
aaaatacaaggaaataaacaggaaaacaaggcgagccatttagctgttcc
tgctgtgtcccaggagaaagttctcagtcctccctgaggctgactggccc
atgagacttacaccaagccatctcggcccatcacctggcctagttattcc
ttccccagtacccttccttcttgttccttttctgcttcacttccaatccc
actgtccattccatcagtgttgagccccctcatgcccctcttctattcat
ctgcctctattctaggaccctgggtcggcttccaaaacagaaggaatgca
ggccctgtgcgacctattgacctccttcctttcaatccgatttacctctc
tgagactcgtgcttctccgtctctcctttgtagtcgtatgcccaggctgc
ttggtcccgtttatccttctctacccgtaactgccacctaagccatgaga
gtaatctgcaatagacagtggaaggcttgagaggcctgtcctgggacccc
tgggaaatg
gaattcaatgacatatagaatctaaaacaagctcatctcctagaagttga
gacttgaaaactggttaccagaggctagggataatagaagaggaaagatg
agagaaagtttaacaatgggtattttgtaatatttagtttaaggtatttt
atgtcatatgggatgattatatatgataatggtaaacctttactttaaaa
aagaatagttttattttgaatattaaagaaattagtaaatagttgtctca
ttattctgacattcatataaactcaattctattgagaaaactgcaagctc
atatagtttatagcaactcctaattagccattaagagaattatagactag
aaatggctcatggccttaggacttgggaagttgattcagtaggactgctc
agtcccaagccagcctgggctactgagtgaattacctgaaaatcagcaca
agacaggtttacttaacgtatatgatataatcagaaatgtaatgtgcata
ggaaagaatagagatagaaagaccaattgagatagatttttttcccccat
tttttcctaggatagagcttcactatgcagcccaaataatgttaaactca
cactcttcctgcctcagtcttttgactgctggaacatagattcccatcat
tacaccttgctaaaaggaggctttttatgagtgaagtatttcttgatcat
gagtcagacaggccaatttctgggagtttgaggccagtctagtccgttta
gaattccaggtcagccaggtaatgaaaccctgtctcaaaattcaaaacaa
atatatatggtagctcacaacctcctataattgacgacctttctcttctg
gcctcctcaggcaacgcttagatgtgatgcgcatttatatacacgcatgg
aaaaacactcatacatattaaaaataaaacgaatggaattcaatgagaaa
tttaacaatatggacatatagaaatattgttgggcagaagatttaactca
gagatcatatattctacatctggaaattttggtggtcatagcctactgga
gctttcaagaaaaatttttagattgatattttgtgggtagtataaaaata
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_36955294_36956251
seq2: B6Ng01-243M15.b_43_1001 (reverse)

seq1  CATTTCCCAGGGGGCCAAGG-CTGGCCTCTCAGGCCTTCC-CTGTCTATT  48
      ||||||||||||| || ||| | ||||||||| ||||||| |||||||||
seq2  CATTTCCCAGGGGTCCCAGGACAGGCCTCTCAAGCCTTCCACTGTCTATT  50

seq1  GCAGATTACTCTCATGGCTTTGGTGGCCGCTACGGGGTAGAGAAGGATAA  98
      |||||||||||||||||||| |||||| | ||| ||||||||||||||||
seq2  GCAGATTACTCTCATGGCTTAGGTGGCAGTTAC-GGGTAGAGAAGGATAA  99

seq1  ACGGGACAAAGCAGCCCTGGGATACGACTACAAAGGAGAGACGGAGAAGC  148
      ||||||| ||||||||  || |||||||||||||||||||||||||||||
seq2  ACGGGACCAAGCAGCCTGGGCATACGACTACAAAGGAGAGACGGAGAAGC  149

seq1  ACGAGTCTCAGAGAGGTAAATCGGATTGGAAGGAAGGAGGTCACTAGGTC  198
      |||||||||||||||||||||||||||| |||||||||||||| ||||||
seq2  ACGAGTCTCAGAGAGGTAAATCGGATTGAAAGGAAGGAGGTCAATAGGTC  199

seq1  GCACAGGGCCCGCATTCCTTCTGTTTTGGAAGCCGACCCAGGGTCCTAGA  248
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGGCCTGCATTCCTTCTGTTTTGGAAGCCGACCCAGGGTCCTAGA  249

seq1  ATAGAGGCAGATGAATAGAAGAGGGGCATGAGGGGGCTCAACACTGATGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGGCAGATGAATAGAAGAGGGGCATGAGGGGGCTCAACACTGATGG  299

seq1  AATGGACAGTGGGATTGGAAGTGAAGCAGAAAAGGAACAAGAAGGAAGGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACAGTGGGATTGGAAGTGAAGCAGAAAAGGAACAAGAAGGAAGGG  349

seq1  TACTGGGGAAGGAATAACTAGGCCAGGTGATGGGCCGAGATGGCTTGGTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGGGAAGGAATAACTAGGCCAGGTGATGGGCCGAGATGGCTTGGTG  399

seq1  TAAGTCTCATGGGCCAGTCAGCCTCAGGGAGGACTGAGAACTTTCTCCTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCTCATGGGCCAGTCAGCCTCAGGGAGGACTGAGAACTTTCTCCTG  449

seq1  GGACACAGCAGGAACAGCTAAATGGCTCGCCTTGTTTTCCTGTTTATTTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACAGCAGGAACAGCTAAATGGCTCGCCTTGTTTTCCTGTTTATTTC  499

seq1  CTTGTATTTTGCCTTGGCAGCCATTACTTTTGTGTTTGTCTCTTTCCATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATTTTGCCTTGGCAGCCATTACTTTTGTGTTTGTCTCTTTCCATT  549

seq1  CCTTTTTTTCTCTCCCAACCCCCATACCCTGACCCTTTTTATTTTCTTCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTTTCTCTCCCAACCCCCATACCCTGACCCTTTTTATTTTCTTCC  599

seq1  CATCATCCATCTCTCTCTCTCTCTCTGACTTCTGACATTTCTTCCTCTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCCATCTCTCTCTCTCTCTCTGACTTCTGACATTTCTTCCTCTTT  649

seq1  CTCTGCCACTTCCATATTCCTATCTCCCAATCCTTGCTGCTCCCTCTCCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCACTTCCATATTCCTATCTCCCAATCCTTGCTGCTCCCTCTCCC  699

seq1  TACCAATTCCCAGCCTTCTCATCTCCTGTTTTCACTCTCAGAATTTTCTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAATTCCCAGCCTTCTCATCTCCTGTTTTCACTCTCAGAATTTTCTT  749

seq1  TCCCACAGATTATGCCAAGGGCTTTGGTGGCCAATATGGAATCCAGAAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACAGATTATGCCAAGGGCTTTGGTGGCCAATATGGAATCCAGAAAG  799

seq1  ACCGAGTGGATAAGGTAAACCCCAGGACACCATGGTCTCAAGGGTGTCTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAGTGGATAAGGTAAACCCCAGGACACCATGGTCTCAAGGGTGTCTC  849

seq1  TACGGTAAAGTGGGTACAAGGGAAGAGAGAAGCCAGAAGCAAAATGGAAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGTAAAGTGGGTACAAGGGAAGAGAGAAGCCAGAAGCAAAATGGAAC  899

seq1  TCTTGGACCTGGGTCCTGAGCCTGGTGTGCTGGGCTTCAACATCTAAGGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGACCTGGGTCCTGAGCCTGGTGTGCTGGGCTTCAACATCTAAGGA  949

seq1  GTATGAATTC  958
      ||||||||||
seq2  GTATGAATTC  959

seq1: chr16_36837682_36838785
seq2: B6Ng01-243M15.g_65_1166

seq1  GAATTCAATGACATATAGAATCTAAAACAAGCTCATCTCCTAGAAGTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGACATATAGAATCTAAAACAAGCTCATCTCCTAGAAGTTGA  50

seq1  GACTTGAAAACTGGTTACCAGAGGCTAGGGATAATAGAAGAGGAAAGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGAAAACTGGTTACCAGAGGCTAGGGATAATAGAAGAGGAAAGATG  100

seq1  AGAGAAAGTTTAACAATGGGTATTTTGTAATATTTAGTTTAAGGTATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGTTTAACAATGGGTATTTTGTAATATTTAGTTTAAGGTATTTT  150

seq1  ATGTCATATGGGATGATTATATATGATAATGGTAAACCTTTACTTTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATATGGGATGATTATATATGATAATGGTAAACCTTTACTTTAAAA  200

seq1  AAGAATAGTTTTATTTTGAATATTAAAGAAATTAGTAAATAGTTGTCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAGTTTTATTTTGAATATTAAAGAAATTAGTAAATAGTTGTCTCA  250

seq1  TTATTCTGACATTCATATAAACTCAATTCTATTGAGAAAACTGCAAGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTGACATTCATATAAACTCAATTCTATTGAGAAAACTGCAAGCTC  300

seq1  ATATAGTTTATAGCAACTCCTAATTAGCCATTAAGAGAATTATAGACTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTTTATAGCAACTCCTAATTAGCCATTAAGAGAATTATAGACTAG  350

seq1  AAATGGCTCATGGCCTTAGGACTTGGGAAGTTGATTCAGTAGGACTGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCTCATGGCCTTAGGACTTGGGAAGTTGATTCAGTAGGACTGCTC  400

seq1  AGTCCCAAGCCAGCCTGGGCTACTGAGTGAATTACCTGAAAATCAGCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCAAGCCAGCCTGGGCTACTGAGTGAATTACCTGAAAATCAGCACA  450

seq1  AGACAGGTTTACTTAACGTATATGATATAATCAGAAATGTAATGTGCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGTTTACTTAACGTATATGATATAATCAGAAATGTAATGTGCATA  500

seq1  GGAAAGAATAGAGATAGAAAGACCAATTGAGATAGATTTTTTTCCCCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAATAGAGATAGAAAGACCAATTGAGATAGATTTTTTTCCCCCAT  550

seq1  TTTTTCCTAGGATAGAGCTTCACTATGCAGCCCAAATAATGTTAAACTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTAGGATAGAGCTTCACTATGCAGCCCAAATAATGTTAAACTCA  600

seq1  CACTCTTCCTGCCTCAGTCTTTTGACTGCTGGAACATAGATTCCCATCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTCCTGCCTCAGTCTTTTGACTGCTGGAACATAGATTCCCATCAT  650

seq1  TACACCTTGCTAAAAGGAGGCTTTTTATGAGTGAAGTATTTCTTGATCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCTTGCTAAAAGGAGGCTTTTTATGAGTGAAGTATTTCTTGATCAT  700

seq1  GAGTCAGACAGGCCAATTTCTGGGAGTTTGAGGCCAGTCTAGTCCGTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGACAGGCCAATTTCTGGGAGTTTGAGGCCAGTCTAGTCCGTTTA  750

seq1  GAATTCCAGGTCAGCCAGGTAATGAAACCCTGTCTCAAAATTCAAAACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTCAGCCAGGTAATGAAACCCTGTCTCAAAATTCAAAACAA  800

seq1  ATATATATGGTAGCTCACAACCTCCTATAATTGACGACC-TTCTCTTCTG  849
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATATATATGGTAGCTCACAACCTCCTATAATTGACGACCTTTCTCTTCTG  850

seq1  GCCTCCTCAGGCAACGCTTAGATGTGATGCGCATTTATATACACGCATGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTCAGGCAACGCTTAGATGTGATGCGCATTTATATACACGCATGG  900

seq1  AAAAACACTCATACATATTAAAAATAAAACGAATGGAATTCAATGAGAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACACTCATACATATTAAAAATAAAACGAATGGAATTCAATGAGAAA  950

seq1  TTTAACAATATGGACAATATAAGAAATATTGTT-GGCAGAAGATTTAACT  998
      ||||||||||||||| |||| |||||||||||| ||||||||||||||||
seq2  TTTAACAATATGGAC-ATAT-AGAAATATTGTTGGGCAGAAGATTTAACT  998

seq1  CAGAGATCATATATTCTACATCTGG-AATTTTGGTGGCCATTAGCCTACT  1047
      ||||||||||||||||||||||||| ||||||||||| || |||||||||
seq2  CAGAGATCATATATTCTACATCTGGAAATTTTGGTGGTCA-TAGCCTACT  1047

seq1  TGGAAGCTTTCAAGAAAATTTTTAAGAATTTGATA-TTTGTGGGTAGTAT  1096
        | |||||||||||||| |||| |||  |||||| ||||||||||||||
seq2  --GGAGCTTTCAAGAAAAATTTTTAGA--TTGATATTTTGTGGGTAGTAT  1093

seq1  -AAAATATG  1104
       ||||||||
seq2  AAAAATATG  1102