BAC Information

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BAC

Clone NameB6Ng01-244E11
Chromosome16 (Build37)
Map Location 85,988,480 - 85,989,606
singlet/doubletsinglet
Overlap genenone
Upstream geneApp, Cyyr1, LOC100039994, LOC622000, Adamts1, Adamts5
Downstream geneLOC100040025, LOC100039780
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244E11.bB6Ng01-244E11.g
ACCGA053452GA053453
length1,2111,105
definitionB6Ng01-244E11.b B6Ng01-244E11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatcctggtctagagttccttagctcttaactggcctctatattc
aattgaaaagaaaaaaaggccatgaatttgacagcaagtaaaggggtgca
tggaaggagttagaagggagaatttgtaattaaaatttcaaaaatatata
cttaaaaattaaccacagccatcaaccaggaaagacataatctatccacg
agtacaaaagtacatgtggctagataatagataataaacatagctattta
taaagacaaaataattgagtaatatttttaaatgagcagataaaactata
tattcgtaagtaaccagcatattacatttttaccttcagatgcttcatat
catttttagataaaagccaaagacagtactgaaacctgtatatcaaactt
ccaaacactggctccttgagtcatttgaaacaaattttggcaggatttta
attttgtttggtttattctctttgatgttcatgtccttctacaaagcatt
ttattttatttttctttattttctttgtttagatttccaactttatcccc
cttcctagtttcccctttacaaactccctatcctctcccgcttccctctg
cttctatgagagtgcttcagcactcagccaccacccctgcctcagtgccc
tagcattccactctgttggatcatccagtgaccaagccagctgagtcagt
cagcagagtctcagggcgagggagtgaggattgaaaaggaaaaaaaaaca
gttacacaaaatgatagcctgactccagccagggctgaggctgaagcagc
cttctttccctccagcctgcttttaatatcattctaggtccatccagaac
acggtcagttcttagatcaaagacaaagtgatgaaacaaagtagtaaaca
aggatatcacacaagatagtaactaagtaaagtagtaagcaaaaggatca
cacagcaaagtagcaaacaaagccccacaatcatgttctcaatatctatt
atgagcctactccttgtctgagcccagtgacaatgtcaattctagaagtg
gcaccaaagctctcaccaatcagcttacacacgacccaggcctcccttac
attcgatgccagacagttcattctgctaccatggcagcgtgagccaatgt
acctcatggatactctggagtgcttgggaatccttgaggtgatgatgaat
aagtgtctaat
gaattcttataaagctcataagggaaaggacttagaaaagggaaggaggc
aagatattaatagtttatgttggttgtcatttgctgagtttagcaaatta
ttgcaaggaaacagatgcgctcagccaataattggtgtgattgagaacac
actcaaggagaataaatctgcaggaatgtggggcctctggggtcagagac
acttccattccaaaatggggagagataaggcctaaaaagcttttagtctc
cagggcccattaacaatcagtcctgtatcagagagtacactgagtgtgga
tcttcctgtacatctggttgtagtagcaaagatgtcacacagaaacttga
aagggagagagagcttttgtgctaagacctcaagaaatcaactgggcttg
gcagtaatatctagaaacactttggaatgtaattactgaaacatgggttt
aaagaatcttcataaggctgccagcttagcaagcaaaaatagaaggtttc
cagttaaaccaaagtttagataagaaacaaatagtggctcagtaggagtg
ggtctctggaatacatgctagttattttgaaaggtcatatttttgtttat
agagattcaattgaacttggtatcttgcatgctttctagcttggctaagt
cagggaaatgttgaaggagaataacttctgaataagcagtgtccaaactg
taaataaaataatcattaagtgattttagaataacaattgggcccctaaa
attgctaaagaaactgggtttggaagtctgaggacaatagtggaatgttg
taagcaacagttaggaaacagttctctagaggaaagatggaaacgctacc
aagaatattcctctcagtattggaaatgatggtttccccacctatggtcc
tctattgtttgtaacacctagagatttccattgctgtttattttactgtg
agtggcctcttttctacatgtagatgctgacattttaacactctctgtca
tgctatatactgactgagagatggatcagtgggtgtgactaatcttagta
tctgctgatcatgagaattaggtagacatctggctggacctgacttgata
cctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_85988480_85989606
seq2: B6Ng01-244E11.g_65_1169

seq1  GAATTCTTATAAAGCTCATAAGGGAAAGGACTTAGAAAAGGGAAGGAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATAAAGCTCATAAGGGAAAGGACTTAGAAAAGGGAAGGAGGC  50

seq1  AAGATATTAATAGTTTATGTTGGTTGTCATTTGCTGAGTTTAGCAAATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTAATAGTTTATGTTGGTTGTCATTTGCTGAGTTTAGCAAATTA  100

seq1  TTGCAAGGAAACAGATGCGCTCAGCCAATAATTGGTGTGATTGAGAACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGGAAACAGATGCGCTCAGCCAATAATTGGTGTGATTGAGAACAC  150

seq1  ACTCAAGGAGAATAAATCTGCAGGAATGTGGGGCCTCTGGGGTCAGAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGGAGAATAAATCTGCAGGAATGTGGGGCCTCTGGGGTCAGAGAC  200

seq1  ACTTCCATTCCAAAATGGGGAGAGATAAGGCCTAAAAAGCTTTTAGTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCATTCCAAAATGGGGAGAGATAAGGCCTAAAAAGCTTTTAGTCTC  250

seq1  CAGGGCCCATTAACAATCAGTCCTGTATCAGAGAGTACACTGAGTGTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCCATTAACAATCAGTCCTGTATCAGAGAGTACACTGAGTGTGGA  300

seq1  TCTTCCTGTACATCTGGTTGTAGTAGCAAAGATGTCACACAGAAACTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTGTACATCTGGTTGTAGTAGCAAAGATGTCACACAGAAACTTGA  350

seq1  AAGGGAGAGAGAGCTTTTGTGCTAAGACCTCAAGAAATCAACTGGGCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGAGAGAGCTTTTGTGCTAAGACCTCAAGAAATCAACTGGGCTTG  400

seq1  GCAGTAATATCTAGAAACACTTTGGAATGTAATTACTGAAACATGGGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAATATCTAGAAACACTTTGGAATGTAATTACTGAAACATGGGTTT  450

seq1  AAAGAATCTTCATAAGGCTGCCAGCTTAGCAAGCAAAAATAGAAGGTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATCTTCATAAGGCTGCCAGCTTAGCAAGCAAAAATAGAAGGTTTC  500

seq1  CAGTTAAACCAAAGTTTAGATAAGAAACAAATAGTGGCTCAGTAGGAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAAACCAAAGTTTAGATAAGAAACAAATAGTGGCTCAGTAGGAGTG  550

seq1  GGTCTCTGGAATACATGCTAGTTATTTTGAAAGGTCATATTTTTGTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTGGAATACATGCTAGTTATTTTGAAAGGTCATATTTTTGTTTAT  600

seq1  AGAGATTCAATTGAACTTGGTATCTTGCATGCTTTCTAGCTTGGCTAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTCAATTGAACTTGGTATCTTGCATGCTTTCTAGCTTGGCTAAGT  650

seq1  CAGGGAAATGTTGAAGGAGAATAACTTCTGAATAAGCAGTGTCCAAACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAATGTTGAAGGAGAATAACTTCTGAATAAGCAGTGTCCAAACTG  700

seq1  TAAATAAAATAATCATTAAGTGATTTTAGAATAACAATTGGGCCCCTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAATAATCATTAAGTGATTTTAGAATAACAATTGGGCCCCTAAA  750

seq1  ATTGCTAAAGAAACTGGGTTTGGAAGTCTGAGGACAATAGTGGAATGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTAAAGAAACTGGGTTTGGAAGTCTGAGGACAATAGTGGAATGTTG  800

seq1  TAAGCAACAGTTAGGAAACAGTTCTCTAGAGGAAAGATGGAAACGCTACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAACAGTTAGGAAACAGTTCTCTAGAGGAAAGATGGAAACGCTACC  850

seq1  AAGAATATTCCTCTCAGTATTGG-AATGATGGTTTCCCCACCTATGGTCC  899
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAGAATATTCCTCTCAGTATTGGAAATGATGGTTTCCCCACCTATGGTCC  900

seq1  TCTATTGTTTGTAACACCTAGAGATTTCCATTGCTGTTTATTTTACTGTT  949
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCTATTGTTTGTAACACCTAGAGATTTCCATTGCTGTTTATTTTACTG-T  949

seq1  GAGTGGCCTCTTTTTCTACATTGTAGATGCTGACATTTTAACACTTCTCT  999
      |||||||||| ||||||||| ||||||||||||||||||||||| |||| 
seq2  GAGTGGCCTC-TTTTCTACA-TGTAGATGCTGACATTTTAACAC-TCTC-  995

seq1  TGTCCATTGCTATTATACTGACTGAAGAGGAATGGGTTTAAGTTGGGTTG  1049
      ||||   ||||| ||||||||||| ||||  ||||   | |||  || ||
seq2  TGTC--ATGCTA-TATACTGACTG-AGAG--ATGG--ATCAGT--GGGTG  1035

seq1  TGACTTATTCTTTAGTATCTGCTGGATCATGAGGAATTTTAAGTTAGACA  1099
      ||||| ||   |||||||||||| |||||||| |||||   || ||||||
seq2  TGACTAAT--CTTAGTATCTGCT-GATCATGA-GAATT---AGGTAGACA  1078

seq1  TCTGGGCTGGACCTGACTTGATAACTAG  1127
      ||| ||||||||||||||||||| ||||
seq2  TCT-GGCTGGACCTGACTTGATACCTAG  1105