BAC Information

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BAC

Clone NameB6Ng01-244E16
Chromosome16 (Build37)
Map Location 78,627,579 - 78,628,664
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435483, LOC100039561, Cxadr, Btg3, D16Ertd472e, LOC100039605
Downstream gene4930570E03Rik, Chodl, Prss7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244E16.bB6Ng01-244E16.g
ACCGA053462GA053463
length1,2021,080
definitionB6Ng01-244E16.b B6Ng01-244E16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctgtgagccccatttttaatggggttaatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatccaatttgagataggtaaagatactttcacaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaagctttgcaacttta
tgaggtcccatttattgattctcaatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtacccatatcttcgaggcttttccctac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttaa
tccacttagatttgaccttagtacaaggagataggaatggatcaatttgc
attcttctacttgataaccgccagttgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtcaaagatcaagt
gaccataggtgtatgggttcatctctgggtcttcaattctattccaatgg
tctacttgtctgtcgctataccagtagcatgcagtttttatcacaattgc
tctgtagtacagctttaggtcaggcatggtgattccaccagaggttcttt
tatccatgagcatgggagaacttcccatcttctgagatctcctttaattt
cttcttcagagacttgaaattcttatcatacagatctttcactttcttag
ttagagtcacacaaaggtattttatattatttgtgactattgagaagggt
gttatttccctaatttccttctcagcctgtttatcctttgtttacagaaa
ggccattgacttgtttgagttaattttatatccagctacttcattgaagc
tgttttatcagcttaggagttctctggtggaattttagggtcacttatat
atactatcatatcatctgtaaaagtgatattttggacttcttccttccaa
tttgtatccccttgagctccttttgtgtctaattgctctggaatagaact
cacctgagatcctcttcttcatatctgtatttctgttgctgatgcttgcc
gtctatgggatcagatttccttttcaagaagctttctatctcgaggttcg
cctccacgttggggatgtcattccatgtggttcgacatcttcccaattat
ag
gaattcatttgagggatgactaatttattaattccaattagcagactgaa
actccttcattaaatgggaggaaatgtcttcagttttctcccatctcctt
tccaccacagaaaacattaatgagtggcaccatttcttttgaactctgtc
cctttatttgactcttagaaaaaagctctgatggcttcgtctttatttgt
cacctccagatgccaccactggagtcttgatttagtcagtgacctgtcca
gctcctttcctgtcctcacgccaataactcctaatgacttaagtgtcatt
tagttgtaggttggtataaaatataaatggatagagatgtagcttcgtgg
tggtagagtcctgttttaattacttttctgatgctgtgtcaaaaagccgt
gaccaaggcaagaagcaagagtttatttgagtttgtgcttctagaatgca
tggtggtaggtgagggacagcagcaggctgcctatgcagaactctgagag
accaagttttcaaatgcgaacaagaagtacaaggataaaactgtgtgtgg
agctaggctccgacctctcaaagttcggctcaccttcctccgtcaagtcc
ccacctcctaaaagttctcactaccaactagggactgatgtttgaaatgc
ctgaaactcagggaggtgataatttttcatccaaaccaccacacatattt
acttaacacgacctgtttctcccccatccctcaggaagcagaaacctgag
tgtttaagacaggggataaaagcgagaaattgactgaacagatgagccca
gaagagaggtgtcaaataggacttgtgagaacaccaaccagtttgctcta
gcagtttggggacctgggctagcaagtacattcatagaagccccaaaggt
tgggggcatcaggaatacctggagccatggcaacgttcatcctagccttg
tactacagagatgttcagcatcccacaaaaagccagatggggtaaagaat
tagagagaaacgcctcatttctgagcagttcttagggtaaacacctatca
cacacgttacacaagtctgcactagcacgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_78627579_78628664
seq2: B6Ng01-244E16.g_65_1144

seq1  GAATTCATTTGAGGGATGACTAATTTATTAATTCCAATTAGCAGACTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGAGGGATGACTAATTTATTAATTCCAATTAGCAGACTGAA  50

seq1  ACTCCTTCATTAAATGGGAGGAAATGTCTTCAGTTTTCTCCCATCTCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTCATTAAATGGGAGGAAATGTCTTCAGTTTTCTCCCATCTCCTT  100

seq1  TCCACCACAGAAAACATTAATGAGTGGCACCATTTCTTTTGAACTCTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCACAGAAAACATTAATGAGTGGCACCATTTCTTTTGAACTCTGTC  150

seq1  CCTTTATTTGACTCTTAGAAAAAAGCTCTGATGGCTTCGTCTTTATTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATTTGACTCTTAGAAAAAAGCTCTGATGGCTTCGTCTTTATTTGT  200

seq1  CACCTCCAGATGCCACCACTGGAGTCTTGATTTAGTCAGTGACCTGTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCAGATGCCACCACTGGAGTCTTGATTTAGTCAGTGACCTGTCCA  250

seq1  GCTCCTTTCCTGTCCTCACGCCAATAACTCCTAATGACTTAAGTGTCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTTCCTGTCCTCACGCCAATAACTCCTAATGACTTAAGTGTCATT  300

seq1  TAGTTGTAGGTTGGTATAAAATATAAATGGATAGAGATGTAGCTTCGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGTAGGTTGGTATAAAATATAAATGGATAGAGATGTAGCTTCGTGG  350

seq1  TGGTAGAGTCCTGTTTTAATTACTTTTCTGATGCTGTGTCAAAAAGCCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGAGTCCTGTTTTAATTACTTTTCTGATGCTGTGTCAAAAAGCCGT  400

seq1  GACCAAGGCAAGAAGCAAGAGTTTATTTGAGTTTGTGCTTCTAGAATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGGCAAGAAGCAAGAGTTTATTTGAGTTTGTGCTTCTAGAATGCA  450

seq1  TGGTGGTAGGTGAGGGACAGCAGCAGGCTGCCTATGCAGAACTCTGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTAGGTGAGGGACAGCAGCAGGCTGCCTATGCAGAACTCTGAGAG  500

seq1  ACCAAGTTTTCAAATGCGAACAAGAAGTACAAGGATAAAACTGTGTGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTTTTCAAATGCGAACAAGAAGTACAAGGATAAAACTGTGTGTGG  550

seq1  AGCTAGGCTCCGACCTCTCAAAGTTCGGCTCACCTTCCTCCGTCAAGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGGCTCCGACCTCTCAAAGTTCGGCTCACCTTCCTCCGTCAAGTCC  600

seq1  CCACCTCCTAAAAGTTCTCACTACCAACTAGGGACTGATGTTTGAAATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCCTAAAAGTTCTCACTACCAACTAGGGACTGATGTTTGAAATGC  650

seq1  CTGAAACTCAGGGAGGTGATAATTTTTCATCCAAACCACCACACATATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACTCAGGGAGGTGATAATTTTTCATCCAAACCACCACACATATTT  700

seq1  ACTTAACACGACCTGTTTCTCCCCCATCCCTCAGGAAGCAGAAACCTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAACACGACCTGTTTCTCCCCCATCCCTCAGGAAGCAGAAACCTGAG  750

seq1  TGTTTAAGACAGGGGATAAAAGCGAGAAATTGACTGAACAGATGAGCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAGACAGGGGATAAAAGCGAGAAATTGACTGAACAGATGAGCCCA  800

seq1  GAAGAGAGGTGTCAAATAGGACTTGTGAGAACACCAACCAGTTTGCTCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAGGTGTCAAATAGGACTTGTGAGAACACCAACCAGTTTGCTCTA  850

seq1  GCAGTTTTGGGGACCTGGGCTAGCAGGTACATTCATAGAAGCCCCAAAGG  900
      |||| |||||||||||||||||||| ||||||||||||||||||||||||
seq2  GCAG-TTTGGGGACCTGGGCTAGCAAGTACATTCATAGAAGCCCCAAAGG  899

seq1  TT-GGGGCATCAGGAATACCTGGAGCCATGGCAACGTTCATCCTAGCCTT  949
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGCATCAGGAATACCTGGAGCCATGGCAACGTTCATCCTAGCCTT  949

seq1  GTACTACAGAGATG-TCAGCCATCCCAC-AAAAGCCAGATGGGGTAAAGA  997
      |||||||||||||| |||| |||||||| |||||||||||||||||||||
seq2  GTACTACAGAGATGTTCAG-CATCCCACAAAAAGCCAGATGGGGTAAAGA  998

seq1  ATTAGAGAGAAAACGCTCCATTTCTGAAGCAGTTCTTAGGGTAAAACACC  1047
      ||||||||| ||||||  |||||||| ||||||||||||||| |||||||
seq2  ATTAGAGAG-AAACGCCTCATTTCTG-AGCAGTTCTTAGGGT-AAACACC  1045

seq1  TATCACACCACGTTTACACAATTCTGCCACTAAGCACGT  1086
      ||||||| |||| |||||||| |||| |||| |||||||
seq2  TATCACA-CACG-TTACACAAGTCTG-CACT-AGCACGT  1080