BAC Information

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BAC

Clone NameB6Ng01-244J01
Chromosome16 (Build37)
Map Location 65,312,226 - 65,461,261
singlet/doubletdoublet
Overlap genenone
Upstream geneCkt2, 4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, Htr1f, LOC668247, LOC672931
Downstream genePou1f1, Chmp2b, EG383186, Vgll3, LOC664846, LOC100039035
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244J01.bB6Ng01-244J01.g
ACCGA053666GA053667
length1,0591,105
definitionB6Ng01-244J01.b B6Ng01-244J01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,312,226 - 65,313,221)(65,460,164 - 65,461,261)
sequence
gaattctttacagagatctttaacagaattccacaagagaagttactttg
ctaatttcaactgagccagagaagcactcagaaccacacagatgttatta
acctatatccacatgttgcatccaacatttatggaatatttgttttgttt
gaaggtgcttattacttgttggatacttgtcagaaaataactatcatata
tatgcaatatatatatatatatatatatatatatatatatatatatatac
ctcagtatacatagacacacagacacacacatctggtttggaacatggaa
gagtacacagcttaacattaaaactgtgcccttaagcttctgttttataa
actgactatatggccagtccaaagcatagtaaaaatgattacattgtctt
cttaaaggcaatttgatcttgagcaggctgagtacacagtaagatagcag
actgagtatattatcttaagtgatctcaaagcactttattaacttggttt
caaggctgggcagaagttcagtcagtctttctaaaggtatttctagacaa
aaataccatgtacttattcttacacacactcacatccacacaggtgcaag
aagtcattgactgttggttatatgaactgttttaaagataaaattggttt
tgtatgacaaatgagggggcttgcccgtgaggaggattgattgactctca
gcagtcattcagttgcctgcagctctttgtctattcgaggacctttctga
gatgtcccctatcaacatgatctcctcacctggtgctgccactgaatttt
cacttattgtgtaggtgaccatgctgttgagagttcatggctgcagcttt
tatgccgtagtcagaggacacggtcttaaaagcatttataccgggctctc
tggggtgttctagtcttttcaacccaccttcttgaaatgggtctcttgag
gcgcaaggtgtatggggttcttgtttgtaaggttgtgccttgatgtcatt
cttgtctcccaaagtgtataaattggtctcagcattttaaacaggctggt
gggtcattg
gaattctggaaggtgcaacctaaggcagggacttcagggcatgagtcagt
ggagtgtgcacaagcagatggtagtggtgctgcacttgcagtttgaattc
tgtggacaaacagacttttgccaaactagagaatggaagcggtattaggt
aatgcaggcagggtaagtgttactcctctgaactatcggctctgcagaga
acacaggcccaaggaattcatccaaaggttgcccactcatatttgtgcct
cccaggtcttcctagaaaaccacagccctgtcaactcaaactttcctggc
caatcaccaccgtgatttcctcagatgattttgaggtttgagataattaa
aatttttcagtaaaatattttattgttaaaaattgcatcactgaacattt
taaattcaaaatgtgaaacggtaaatttagtcttttaaaattgaccctta
agcgactttttttttcctgcctctttctaggactttagtaaacactgtga
tttaattcatttaatttccactacctaaaagtttactaaaagttaaattt
caaaataaaagaaacacacaccctaagatgtagagattaggagaaagtag
ctaatttacgtacggcacgaatcttttctaaaactatatgataactaatc
tattagatgttaccagttgcagatagatgtaaagcagttttccttgaaat
caagatccatcttgatgtaaaacatcactctcaacatgctatttcatcat
acaacgtataatgagcccgtttttcttccacacacaagctgcttgcagct
tacaactcaaggaccaggtcaagaaaggcagggaaagtgagaatttcttt
ccctgctaacaacatggccttcaccccaatgacgtgtgtgtaaacttctg
aacacagagacatgcatttgctctcactctcaagagagcaaattttaatg
aaagaaattcttaaatgtaagaccatgtctaacatttagtaaaagtcaaa
tacatttttaaaaaatcatttttttttctggaccatagcctttctgttga
gctccatcatagcctctcctgatttacctcatatacctaatataactcat
tatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_65312226_65313221
seq2: B6Ng01-244J01.b_86_1104

seq1  AGTTACTTTGCTAATTTCAACTGAGCCAGAGAAGCACTCAGAACCACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTTTGCTAATTTCAACTGAGCCAGAGAAGCACTCAGAACCACACA  50

seq1  GATGTTATTAACCTATATCCACATGTTGCATCCAACATTTATGGAATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTATTAACCTATATCCACATGTTGCATCCAACATTTATGGAATATT  100

seq1  TGTTTTGTTTGAAGGTGCTTATTACTTGTTGGATACTTGTCAGAAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTGAAGGTGCTTATTACTTGTTGGATACTTGTCAGAAAATAA  150

seq1  CTATCATATATATGCAATATATATATATATATATATATATATATATATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCATATATATGCAATATATATATATATATATATATATATATATATAT  200

seq1  ATATATATACCTCAGTATACATAGACACACAGACACACACATCTGGTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATACCTCAGTATACATAGACACACAGACACACACATCTGGTTTG  250

seq1  GAACATGGAAGAGTACACAGCTTAACATTAAAACTGTGCCCTTAAGCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGGAAGAGTACACAGCTTAACATTAAAACTGTGCCCTTAAGCTTC  300

seq1  TGTTTTATAAACTGACTATATGGCCAGTCCAAAGCATAGTAAAAATGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATAAACTGACTATATGGCCAGTCCAAAGCATAGTAAAAATGATT  350

seq1  ACATTGTCTTCTTAAAGGCAATTTGATCTTGAGCAGGCTGAGTACACAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTCTTCTTAAAGGCAATTTGATCTTGAGCAGGCTGAGTACACAGT  400

seq1  AAGATAGCAGACTGAGTATATTATCTTAAGTGATCTCAAAGCACTTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGCAGACTGAGTATATTATCTTAAGTGATCTCAAAGCACTTTATT  450

seq1  AACTTGGTTTCAAGGCTGGGCAGAAGTTCAGTCAGTCTTTCTAAAGGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGTTTCAAGGCTGGGCAGAAGTTCAGTCAGTCTTTCTAAAGGTAT  500

seq1  TTCTAGACAAAAATACCATGTACTTATTCTTACACACACTCACATCCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGACAAAAATACCATGTACTTATTCTTACACACACTCACATCCACA  550

seq1  CAGGTGCAAGAAGTCATTGACTGTTGGTTATATGAACTGTTTTAAAGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGCAAGAAGTCATTGACTGTTGGTTATATGAACTGTTTTAAAGATA  600

seq1  AAATTGGTTTTGTATGACAAATGAGGGGGCTTGCCCGTGAGGAGGATTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGTTTTGTATGACAAATGAGGGGGCTTGCCCGTGAGGAGGATTGA  650

seq1  TTGACTCTCAGCAGTCATTCAGTTGCCTGCAGCTCTTTGTCTATTCGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCTCAGCAGTCATTCAGTTGCCTGCAGCTCTTTGTCTATTCGAGG  700

seq1  ACCTTTCTGAGATGTCCCCTATCAACATGATCTCCTCACCTGGTGCTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCTGAGATGTCCCCTATCAACATGATCTCCTCACCTGGTGCTGCC  750

seq1  ACTGAATTTTCACTTATTGTGTAGGTGACCATGCTGTTGAGAGTTCATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATTTTCACTTATTGTGTAGGTGACCATGCTGTTGAGAGTTCATGG  800

seq1  CTGCAGCTTTTATGCCGTAGTCAGAGGACACGGTCTT-AAAGCATTTATA  849
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTGCAGCTTTTATGCCGTAGTCAGAGGACACGGTCTTAAAAGCATTTATA  850

seq1  CC-GGCTCTCT-GGGTGTTCTAGTCTTTCCA--CCACCT--CTGAAAT-G  892
      || |||||||| |||||||||||||||| ||  ||||||   |||||| |
seq2  CCGGGCTCTCTGGGGTGTTCTAGTCTTTTCAACCCACCTTCTTGAAATGG  900

seq1  GTCTC-TGAGCCGC-AGGTGTA-GGGGTTCT--GTTGTAAG--TGTGCC-  934
      ||||| |||| ||| ||||||| ||||||||   |||||||  |||||| 
seq2  GTCTCTTGAGGCGCAAGGTGTATGGGGTTCTTGTTTGTAAGGTTGTGCCT  950

seq1  TGATGTCA-TCTTGTC-CCCAAGGT---TAAATTGTTCTCAGCATTTTAA  979
      |||||||| ||||||| ||||| ||   ||||||| ||||||||||||||
seq2  TGATGTCATTCTTGTCTCCCAAAGTGTATAAATTGGTCTCAGCATTTTAA  1000

seq1  ACAG--TTGTGGGTCATTG  996
      ||||  | |||||||||||
seq2  ACAGGCTGGTGGGTCATTG  1019

seq1: chr16_65460164_65461261
seq2: B6Ng01-244J01.g_66_1170 (reverse)

seq1  TAATAATGAGTAA-----------------AAATCAGGAGAGCATAATGA  33
      ||||||||||| |                 ||||||||||||  | ||||
seq2  TAATAATGAGTTATATTAGGTATATGAGGTAAATCAGGAGAGGCT-ATGA  49

seq1  ATGAAACCTCACCAGAAAGCCTATGTTTCAGAAAAAAAAATGATTTTTTA  83
        |  | |||| ||||||| ||||| | ||||||||||||||||||||||
seq2  TGG--AGCTCAACAGAAAGGCTATGGTCCAGAAAAAAAAATGATTTTTTA  97

seq1  AAAATGTATTTGACTTTTTACTTAAATGTTAAGACATGGTCTTAACATTT  133
      |||||||||||||| |||||| |||||||| |||||||||||| ||||||
seq2  AAAATGTATTTGAC-TTTTAC-TAAATGTT-AGACATGGTCTT-ACATTT  143

seq1  AAGAATTTTCTTTTCATTAAAATTTTGCTCCTCTTGAGAGTGAGAGCAAA  183
      ||||||||   ||||||||||| |||||| ||||||||||||||||||||
seq2  AAGAATTT--CTTTCATTAAAA-TTTGCT-CTCTTGAGAGTGAGAGCAAA  189

seq1  TGCATGTCTCTGTG-TCAGAAGTTTAACACACACGTCATTGGGGTGAAGG  232
      |||||||||||||| |||||||||| ||||||||||||||||||||||||
seq2  TGCATGTCTCTGTGTTCAGAAGTTT-ACACACACGTCATTGGGGTGAAGG  238

seq1  CCATGTTGTTAGCAGGGAAAGAAATTCTCACTTTCCCTGCC-TTCTTGAC  281
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCATGTTGTTAGCAGGGAAAGAAATTCTCACTTTCCCTGCCTTTCTTGAC  288

seq1  CTGGTCCTTGAGTTGTAAGCTGCAAGCAGCTTGTGTGTGGAAGAAAAACG  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCCTTGAGTTGTAAGCTGCAAGCAGCTTGTGTGTGGAAGAAAAACG  338

seq1  GGCTCATTATACGTTGTATGATGAAATAGCATGTTGAGAGTGATGTTTTA  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCATTATACGTTGTATGATGAAATAGCATGTTGAGAGTGATGTTTTA  388

seq1  CATCAAGATGGATCTTGATTTCAAGGAAAACTGCTTTACATCTATCTGCA  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAGATGGATCTTGATTTCAAGGAAAACTGCTTTACATCTATCTGCA  438

seq1  ACTGGTAACATCTAATAGATTAGTTATCATATAGTTTTAGAAAAGATTCG  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTAACATCTAATAGATTAGTTATCATATAGTTTTAGAAAAGATTCG  488

seq1  TGCCGTACGTAAATTAGCTACTTTCTCCTAATCTCTACATCTTAGGGTGT  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGTACGTAAATTAGCTACTTTCTCCTAATCTCTACATCTTAGGGTGT  538

seq1  GTGTTTCTTTTATTTTGAAATTTAACTTTTAGTAAACTTTTAGGTAGTGG  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCTTTTATTTTGAAATTTAACTTTTAGTAAACTTTTAGGTAGTGG  588

seq1  AAATTAAATGAATTAAATCACAGTGTTTACTAAAGTCCTAGAAAGAGGCA  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAATGAATTAAATCACAGTGTTTACTAAAGTCCTAGAAAGAGGCA  638

seq1  GGAAAAAAAAAGTCGCTTAAGGGTCAATTTTAAAAGACTAAATTTACCGT  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAAAAAGTCGCTTAAGGGTCAATTTTAAAAGACTAAATTTACCGT  688

seq1  TTCACATTTTGAATTTAAAATGTTCAGTGATGCAATTTTTAACAATAAAA  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATTTTGAATTTAAAATGTTCAGTGATGCAATTTTTAACAATAAAA  738

seq1  TATTTTACTGAAAAATTTTAATTATCTCAAACCTCAAAATCATCTGAGGA  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTACTGAAAAATTTTAATTATCTCAAACCTCAAAATCATCTGAGGA  788

seq1  AATCACGGTGGTGATTGGCCAGGAAAGTTTGAGTTGACAGGGCTGTGGTT  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACGGTGGTGATTGGCCAGGAAAGTTTGAGTTGACAGGGCTGTGGTT  838

seq1  TTCTAGGAAGACCTGGGAGGCACAAATATGAGTGGGCAACCTTTGGATGA  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGAAGACCTGGGAGGCACAAATATGAGTGGGCAACCTTTGGATGA  888

seq1  ATTCCTTGGGCCTGTGTTCTCTGCAGAGCCGATAGTTCAGAGGAGTAACA  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTGGGCCTGTGTTCTCTGCAGAGCCGATAGTTCAGAGGAGTAACA  938

seq1  CTTACCCTGCCTGCATTACCTAATACCGCTTCCATTCTCTAGTTTGGCAA  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCCTGCCTGCATTACCTAATACCGCTTCCATTCTCTAGTTTGGCAA  988

seq1  AAGTCTGTTTGTCCACAGAATTCAAACTGCAAGTGCAGCACCACTACCAT  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGTTTGTCCACAGAATTCAAACTGCAAGTGCAGCACCACTACCAT  1038

seq1  CTGCTTGTGCACACTCCACTGACTCATGCCCTGAAGTCCCTGCCTTAGGT  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGTGCACACTCCACTGACTCATGCCCTGAAGTCCCTGCCTTAGGT  1088

seq1  TGCACCTTCCAGAATTC  1098
      |||||||||||||||||
seq2  TGCACCTTCCAGAATTC  1105