BAC Information

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BAC

Clone NameB6Ng01-244J09
Chromosome16 (Build37)
Map Location 64,603,966 - 64,816,281
singlet/doubletdoublet
Overlap gene4930453N24Rik, Zfp654, LOC433036
Upstream geneEpha3, LOC100043540, Ckt2
Downstream geneCggbp1, LOC668242, LOC100043815, LOC677448, Htr1f, LOC668247, LOC672931, Pou1f1, Chmp2b, EG383186, Vgll3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244J09.bB6Ng01-244J09.g
ACCGA053682GA053683
length5461,013
definitionB6Ng01-244J09.b B6Ng01-244J09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,815,763 - 64,816,281)(64,603,966 - 64,604,845)
sequence
taccaaatatctatcaagctagtagaataatggaacatctgttcacaaca
ggatttgctgggttcagtcttaaaacctactgctaaaagagaaaaagaga
aagattcaaaatatatatgtatggggagagaaagagaagagagagagaga
gagagagagagagagagagagagagagagagagagcaagcgcaataagta
gtgacttaaaatttcatgtcttattttttgacaattttattttataaggc
gattcttgtcttgatcccctgatggacccaggaaaattatattataatag
caatgaaaaaacacttgtaatgcataggaagattctataaaaaaagaata
tgtatgggaatttgaaatagattctaataaccgcatggataactttgaaa
ggctcaagacttcagtagaggaattaactgaagatgtattagaaagatag
aattacgcacagagcctggggatacaaatgaattgctataaacaatttta
aaataggaaaagttacatcttataagtacagtgctttttagatagc
gaattcccctacactggggcatcgagccttcacaggaccaagggcttctc
ctcccattgatatctgacaaggccatcttctgctacatatgcagctggag
ccatgggtccctccatttgtattctttggttggtggtttagtctctggag
ctatgggggtactggtaggttgatattgttgttcctcctatggggctgca
aaccccttcagctccttgggtcctttctctagctcctccatcagggaccc
tgtggccagctcaatggatggctgtgagcatccacgtctgtatttgtcag
gcactggcagagcctctcaggagacagctatatcaggctcctgtctgcaa
gctcttgttggcatccgtaatagggtctgggtttagtaactgtatatgga
ctggatccccaggtggaacattcttatctccttgtacaaaactcaagtcc
aagtggatcaaggatctccacataaaaccagatacactgaaactaataga
aaagaaagtggggaagagcctcgagcacatgggcacaggggaaattttcc
tgaacagaacaccaatagcctatgctctgagatcaagaattgaaaaatgg
gacctcacaaaattgtaaagcttctatttttcactcttttaacctgattc
tcacatctgagttatctttaaatggttttattttccagttctttattaaa
atattaaaatatttactaaggcatctttaattatatcctgcatcagtgga
aactttttattcggttcttcaactatcagttattcattttagcagacagt
tcattttaactgggactcaggctgtaggcagtgtttctctaaaagtaagt
caaatgtcaatgaagttcagtccccactttttcagtaaaataatgctcac
tgatataaatagaccaaatgttagctacaaatttgggtagcatctgtatg
cagaaggcctcttctcggcccttggtttcccagtttttgggtttttgttt
gtttttttgttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_64815763_64816281
seq2: B6Ng01-244J09.b_80_598 (reverse)

seq1  GCTATCTAAAAAGCACTGTACTTATAAGATGTAACTTTTCCTATTTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCTAAAAAGCACTGTACTTATAAGATGTAACTTTTCCTATTTTAAA  50

seq1  ATTGTTTATAGCAATTCATTTGTATCCCCAGGCTCTGTGCGTAATTCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTATAGCAATTCATTTGTATCCCCAGGCTCTGTGCGTAATTCTAT  100

seq1  CTTTCTAATACATCTTCAGTTAATTCCTCTACTGAAGTCTTGAGCCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAATACATCTTCAGTTAATTCCTCTACTGAAGTCTTGAGCCTTTC  150

seq1  AAAGTTATCCATGCGGTTATTAGAATCTATTTCAAATTCCCATACATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTATCCATGCGGTTATTAGAATCTATTTCAAATTCCCATACATATT  200

seq1  CTTTTTTTATAGAATCTTCCTATGCATTACAAGTGTTTTTTCATTGCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTATAGAATCTTCCTATGCATTACAAGTGTTTTTTCATTGCTAT  250

seq1  TATAATATAATTTTCCTGGGTCCATCAGGGGATCAAGACAAGAATCGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATATAATTTTCCTGGGTCCATCAGGGGATCAAGACAAGAATCGCCT  300

seq1  TATAAAATAAAATTGTCAAAAAATAAGACATGAAATTTTAAGTCACTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATAAAATTGTCAAAAAATAAGACATGAAATTTTAAGTCACTACT  350

seq1  TATTGCGCTTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCGCTTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  400

seq1  TCTCTCTCTTCTCTTTCTCTCCCCATACATATATATTTTGAATCTTTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTTCTCTTTCTCTCCCCATACATATATATTTTGAATCTTTCTC  450

seq1  TTTTTCTCTTTTAGCAGTAGGTTTTAAGACTGAACCCAGCAAATCCTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCTTTTAGCAGTAGGTTTTAAGACTGAACCCAGCAAATCCTGTT  500

seq1  GTGAACAGATGTTCCATTA  519
      |||||||||||||||||||
seq2  GTGAACAGATGTTCCATTA  519

seq1: chr16_64603966_64604845
seq2: B6Ng01-244J09.g_195_1079

seq1  GTTGGTGGTTTAGTCTCTGGAGCTATGGGGGTACTGGTAGGTTGATATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTGGTTTAGTCTCTGGAGCTATGGGGGTACTGGTAGGTTGATATTG  50

seq1  TTGTTCCTCCTATGGGGCTGCAAACCCCTTCAGCTCCTTGGGTCCTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCTCCTATGGGGCTGCAAACCCCTTCAGCTCCTTGGGTCCTTTCT  100

seq1  CTAGCTCCTCCATCAGGGACCCTGTGGCCAGCTCAATGGATGGCTGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTCCTCCATCAGGGACCCTGTGGCCAGCTCAATGGATGGCTGTGAG  150

seq1  CATCCACGTCTGTATTTGTCAGGCACTGGCAGAGCCTCTCAGGAGACAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACGTCTGTATTTGTCAGGCACTGGCAGAGCCTCTCAGGAGACAGC  200

seq1  TATATCAGGCTCCTGTCTGCAAGCTCTTGTTGGCATCCGTAATAGGGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCAGGCTCCTGTCTGCAAGCTCTTGTTGGCATCCGTAATAGGGTCT  250

seq1  GGGTTTAGTAACTGTATATGGACTGGATCCCCAGGTGGAACATTCTTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTAGTAACTGTATATGGACTGGATCCCCAGGTGGAACATTCTTATC  300

seq1  TCCTTGTACAAAACTCAAGTCCAAGTGGATCAAGGATCTCCACATAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTACAAAACTCAAGTCCAAGTGGATCAAGGATCTCCACATAAAAC  350

seq1  CAGATACACTGAAACTAATAGAAAAGAAAGTGGGGAAGAGCCTCGAGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACACTGAAACTAATAGAAAAGAAAGTGGGGAAGAGCCTCGAGCAC  400

seq1  ATGGGCACAGGGGAAATTTTCCTGAACAGAACACCAATAGCCTATGCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCACAGGGGAAATTTTCCTGAACAGAACACCAATAGCCTATGCTCT  450

seq1  GAGATCAAGAATTGAAAAATGGGACCTCACAAAATTGTAAAGCTTCTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCAAGAATTGAAAAATGGGACCTCACAAAATTGTAAAGCTTCTATT  500

seq1  TTTCACTCTTTTAACCTGATTCTCACATCTGAGTTATCTTGAAATGGTTT  550
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTTCACTCTTTTAACCTGATTCTCACATCTGAGTTATCTTTAAATGGTTT  550

seq1  TATTTTCCAGTTCTTTATTAAAATATTAAAATATTTACTAAGGCATCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCAGTTCTTTATTAAAATATTAAAATATTTACTAAGGCATCTTT  600

seq1  AATTATATCCTGCATCAGTGGAAACTTTTTATTCGGTTCTTCAACTATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATATCCTGCATCAGTGGAAACTTTTTATTCGGTTCTTCAACTATCA  650

seq1  GTTATTCA-TTTAGCAGACAGTTCA-TTTAACT-GGACTCAGGCTGTAGG  697
      |||||||| |||||||||||||||| ||||||| ||||||||||||||||
seq2  GTTATTCATTTTAGCAGACAGTTCATTTTAACTGGGACTCAGGCTGTAGG  700

seq1  CAGTGTTTCTCTAAAAGTAAGTCAAATGTCAATGAAGTTCAGT-CCCACT  746
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAGTGTTTCTCTAAAAGTAAGTCAAATGTCAATGAAGTTCAGTCCCCACT  750

seq1  TGTTCAGTAAAATAATGCTCACTGATATAAATAGACCAAATGTTAGCTAC  796
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGTAAAATAATGCTCACTGATATAAATAGACCAAATGTTAGCTAC  800

seq1  AAATTT-GGTAGCATCTGTATGCAG-AGGCCTCTTCTCGGCCCCTTTGTT  844
      |||||| |||||||||||||||||| |||||||||||||| ||||| |||
seq2  AAATTTGGGTAGCATCTGTATGCAGAAGGCCTCTTCTCGG-CCCTTGGTT  849

seq1  TCCCAGTTTTTTGGTTTTTGTTTGTTTGTTTGTTTG  880
      ||||||||||| ||||||||||||||| |||||| |
seq2  TCCCAGTTTTTGGGTTTTTGTTTGTTTTTTTGTTGG  885