BAC Information

Click to search

BAC

Clone NameB6Ng01-245A13
Chromosome16 (Build37)
Map Location 71,973,896 - 72,126,272
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039231
Downstream geneRobo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245A13.bB6Ng01-245A13.g
ACCGA054023GA054024
length1,1031,079
definitionB6Ng01-245A13.b B6Ng01-245A13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,973,896 - 71,974,887)(72,125,183 - 72,126,272)
sequence
gggaattccatcagaagatgagtaattctgacttcttcccatacaagaaa
cttttaatcacgagaatatagaagtgattgccaggttttggtacaggatg
tgtattttatctttaaaattattaagtatatttggagggagatattttgg
aagcataaaattatcttcttctcatcgtattctcactcattagtattaca
tctgttgcagtttattgccagcattatttttatgatgcttgctaaaggtg
attttcaaactccatcactctacttagaataattagtaatgttaaaataa
agttttagcatttcttcttatgtggatgtatcaattcttatgttagtgcc
aagggagatattagtttttttactaaatgagtaataatctgctactgtca
ttaattgttcaaagtgactaggatttggctagggagagcacattcgggct
cattactgtgtcctttgacacttctccaacacttttgagcactttcactt
tcacacataattgctggcatatggtgtttcaggcttaactgtatattttc
tgtcctagctttgaaatcagccatttcttcaagaagtccccctttcctta
agtgagtattaagaatctcaccatcacttgtgcggattctcttgcagctc
ttgccacccccttttttcttttacttgttgatttttttcattggatattt
tatttatttatatttcaaatgttatcccctttcccaatctcccccctcta
gaagcctcctattccatgccccctcctcctgattctatgagggtgtaccc
ccatccacctacccccctcctccctgccctagcattcccctacactgagg
cattcagccttcacaggaccaagggcctcttctcccattaacgctcaaca
aggccatcctctgctacatagacggctggaaccatgggtccctccatggg
tattctgcttggtggtttagtcccagggagctctgggtgggtgatattga
tgtcttcctatgatggtggcaatccctttgggctccttcattcttctcta
actcctccaatggggacccgatcagttcatggatggctgcagcttcttcc
tct

gaattccctagggttctctggctagccagtcaagcaaaatgaacaaatca
ggtttttaaaaaagcccaccttgtcttgatcaaaatataatagttactcc
taagggacgacaccaaaagttgacatctggctgtcccatttatgtgcacc
catagggttgcatacccacaaaaataagtgcagctgaacacaggtagaca
tgtgtgtatgtagtatgagttagaaaaaaaaacttgttatataaatgccg
agtaaatgaaataagcatgttaacgtgtaaaaatcaacttcagaacaagc
aacatttatggacagaaagataaactttataatagatgaattaaataatt
cagaaacgagttgaatatctaaaaatgcacaagaaaatcttccggggaaa
tataaaataatgaaagagaccacaataagagattagaactacttctccat
aactactaagaaaatacagtatcattatgagtacacatgacttgaactac
attactaaatgcctgactaacacaatcataacaaagaactaacttaatca
atcattggttcttccaattatatattaatctttcactgaaatatatgttc
tagaatagaaaaaataccttaaatagaaaagagtagaggaatttaaatca
aaaattaaactttaagaaaggattcatgagaaatatcaaattagaaatta
gataccatgtgtttaataggtcatcaatgaaagactctaggaaaaaatat
tgcaaatcaaatgatctataaaaaagtaggacacaaagattcacagaatc
catataagtaatttccataaaaatatgtcatgaaatgtttattacaatac
catattaaatggtttataaatatctcttgatataaagtcatattcatata
tatacactatatatatatactgtatatatatacactatatatactatata
tacactatatatacactatatatatatatatatatatatatatatatacg
ctatatatatcataaacaaaactaaggcagcatatatcacacaaatagca
tttgctactgcaaagaagaagaagtctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_71973896_71974887
seq2: B6Ng01-245A13.b_163_1149

seq1  AATTATTAAGTATATTTGGAGGGAGATATTTTGGAAGCATAAAATTATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTAAGTATATTTGGAGGGAGATATTTTGGAAGCATAAAATTATCT  50

seq1  TCTTCTCATCGTATTCTCACTCATTAGTATTACATCTGTTGCAGTTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCATCGTATTCTCACTCATTAGTATTACATCTGTTGCAGTTTATT  100

seq1  GCCAGCATTATTTTTATGATGCTTGCTAAAGGTGATTTTCAAACTCCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCATTATTTTTATGATGCTTGCTAAAGGTGATTTTCAAACTCCATC  150

seq1  ACTCTACTTAGAATAATTAGTAATGTTAAAATAAAGTTTTAGCATTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACTTAGAATAATTAGTAATGTTAAAATAAAGTTTTAGCATTTCTT  200

seq1  CTTATGTGGATGTATCAATTCTTATGTTAGTGCCAAGGGAGATATTAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTGGATGTATCAATTCTTATGTTAGTGCCAAGGGAGATATTAGTT  250

seq1  TTTTTACTAAATGAGTAATAATCTGCTACTGTCATTAATTGTTCAAAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACTAAATGAGTAATAATCTGCTACTGTCATTAATTGTTCAAAGTG  300

seq1  ACTAGGATTTGGCTAGGGAGAGCACATTCGGGCTCATTACTGTGTCCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGATTTGGCTAGGGAGAGCACATTCGGGCTCATTACTGTGTCCTTT  350

seq1  GACACTTCTCCAACACTTTTGAGCACTTTCACTTTCACACATAATTGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTCTCCAACACTTTTGAGCACTTTCACTTTCACACATAATTGCTG  400

seq1  GCATATGGTGTTTCAGGCTTAACTGTATATTTTCTGTCCTAGCTTTGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGGTGTTTCAGGCTTAACTGTATATTTTCTGTCCTAGCTTTGAAA  450

seq1  TCAGCCATTTCTTCAAGAAGTCCCCCTTTCCTTAAGTGAGTATTAAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCATTTCTTCAAGAAGTCCCCCTTTCCTTAAGTGAGTATTAAGAAT  500

seq1  CTCACCATCACTTGTGCGGATTCTCTTGCAGCTCTTGCCACCCCCTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCATCACTTGTGCGGATTCTCTTGCAGCTCTTGCCACCCCCTTTTT  550

seq1  TCTTTTACTTGTTGATTTTTTTCATTGGATATTTTATTTATTTATATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTACTTGTTGATTTTTTTCATTGGATATTTTATTTATTTATATTTC  600

seq1  AAATGTTATCCCCTTTCCCAATCTCCCCCCTCTAGAAGCCTCCTATTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTATCCCCTTTCCCAATCTCCCCCCTCTAGAAGCCTCCTATTCCA  650

seq1  TGCCCCCTCCTCCTGATTCTATGAGGGTGTACCCCCATCCACCTACCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCCTCCTCCTGATTCTATGAGGGTGTACCCCCATCCACCTACCCCC  700

seq1  CTCCTCCCTGCCCTAGCATTCCCCTACACTGAGGCATTCAGCCTTCACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCTGCCCTAGCATTCCCCTACACTGAGGCATTCAGCCTTCACAG  750

seq1  GACCAAGGGCCTCTTCTCCCATTAACGCTCAACAAGGCCATCCTCTGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGGGCCTCTTCTCCCATTAACGCTCAACAAGGCCATCCTCTGCTA  800

seq1  CATAGACGGCTGGAACCATGGGTCCCTCCATGGGTATTCTGCTTGGTGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGACGGCTGGAACCATGGGTCCCTCCATGGGTATTCTGCTTGGTGGT  850

seq1  TTAGTCCCAGGGAGCTCTGGTTGGTTGATATTGATGTTCTTCCTATGAT-  899
      |||||||||||||||||||| ||| ||||||||||| |||||||||||| 
seq2  TTAGTCCCAGGGAGCTCTGGGTGGGTGATATTGATG-TCTTCCTATGATG  899

seq1  GTTGCAATCCCCTTTGGCTCCTTCAATTCTTTCTCTAACTCCTCCATTGG  949
      || |||||||| || ||||||||| |||| |||||||||||||||| |||
seq2  GTGGCAATCCCTTTGGGCTCCTTC-ATTC-TTCTCTAACTCCTCCAATGG  947

seq1  GGACCCCGATCAGTTCAATGGATGGCTGCGAGCTTCTTCCTCT  992
      ||| |||||||||||| |||||||||||| |||||||||||||
seq2  GGA-CCCGATCAGTTC-ATGGATGGCTGC-AGCTTCTTCCTCT  987


seq1: chr16_72125183_72126272
seq2: B6Ng01-245A13.g_66_1144 (reverse)

seq1  CCAGACTTTCTTTCCTTTCTTTGGCAGTAGGCAAATGCTATTTGTGTGAT  50
      |||||| |||||    |||||| |||||| ||||||||||||||||||| 
seq2  CCAGAC-TTCTT---CTTCTTT-GCAGTA-GCAAATGCTATTTGTGTGA-  43

seq1  TATATGCCTGCCTTTAGTTTTGTTTATTGGATATATATAGCGTATATATA  100
      |||||| ||||| ||||||||||||||  |||||||||||||||||||||
seq2  TATATG-CTGCC-TTAGTTTTGTTTAT--GATATATATAGCGTATATATA  89

seq1  TATATATATATATATATATATATAGTGTATATATAGTGTATATATAGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATAGTGTATATATAGTGTATATATAGTAT  139

seq1  ATATAGTGTATATATATACAGTATATATATATAGTGTATATATATGAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTGTATATATATACAGTATATATATATAGTGTATATATATGAATA  189

seq1  TGACTTTATATCAAGAGATATTTATAAACCATTTAATATGGTATTGTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTATATCAAGAGATATTTATAAACCATTTAATATGGTATTGTAAT  239

seq1  AAACATTTCATGACATATTTTTATGGAAATTACTTATATGGATTCTGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTCATGACATATTTTTATGGAAATTACTTATATGGATTCTGTGA  289

seq1  ATCTTTGTGTCCTACTTTTTTATAGATCATTTGATTTGCAATATTTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGTGTCCTACTTTTTTATAGATCATTTGATTTGCAATATTTTTTC  339

seq1  CTAGAGTCTTTCATTGATGACCTATTAAACACATGGTATCTAATTTCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGTCTTTCATTGATGACCTATTAAACACATGGTATCTAATTTCTAA  389

seq1  TTTGATATTTCTCATGAATCCTTTCTTAAAGTTTAATTTTTGATTTAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATATTTCTCATGAATCCTTTCTTAAAGTTTAATTTTTGATTTAAAT  439

seq1  TCCTCTACTCTTTTCTATTTAAGGTATTTTTTCTATTCTAGAACATATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTACTCTTTTCTATTTAAGGTATTTTTTCTATTCTAGAACATATAT  489

seq1  TTCAGTGAAAGATTAATATATAATTGGAAGAACCAATGATTGATTAAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGAAAGATTAATATATAATTGGAAGAACCAATGATTGATTAAGTT  539

seq1  AGTTCTTTGTTATGATTGTGTTAGTCAGGCATTTAGTAATGTAGTTCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTTGTTATGATTGTGTTAGTCAGGCATTTAGTAATGTAGTTCAAG  589

seq1  TCATGTGTACTCATAATGATACTGTATTTTCTTAGTAGTTATGGAGAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGTACTCATAATGATACTGTATTTTCTTAGTAGTTATGGAGAAGT  639

seq1  AGTTCTAATCTCTTATTGTGGTCTCTTTCATTATTTTATATTTCCCCGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTAATCTCTTATTGTGGTCTCTTTCATTATTTTATATTTCCCCGGA  689

seq1  AGATTTTCTTGTGCATTTTTAGATATTCAACTCGTTTCTGAATTATTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTCTTGTGCATTTTTAGATATTCAACTCGTTTCTGAATTATTTAA  739

seq1  TTCATCTATTATAAAGTTTATCTTTCTGTCCATAAATGTTGCTTGTTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTATTATAAAGTTTATCTTTCTGTCCATAAATGTTGCTTGTTCTG  789

seq1  AAGTTGATTTTTACACGTTAACATGCTTATTTCATTTACTCGGCATTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGATTTTTACACGTTAACATGCTTATTTCATTTACTCGGCATTTAT  839

seq1  ATAACAAGTTTTTTTTTCTAACTCATACTACATACACACATGTCTACCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAGTTTTTTTTTCTAACTCATACTACATACACACATGTCTACCTG  889

seq1  TGTTCAGCTGCACTTATTTTTGTGGGTATGCAACCCTATGGGTGCACATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGCTGCACTTATTTTTGTGGGTATGCAACCCTATGGGTGCACATA  939

seq1  AATGGGACAGCCAGATGTCAACTTTTGGTGTCGTCCCTTAGGAGTAACTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGACAGCCAGATGTCAACTTTTGGTGTCGTCCCTTAGGAGTAACTA  989

seq1  TTATATTTTGATCAAGACAAGGTGGGCTTTTTTAAAAACCTGATTTGTTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTTGATCAAGACAAGGTGGGCTTTTTTAAAAACCTGATTTGTTC  1039

seq1  ATTTTGCTTGACTGGCTAGCCAGAGAACCCTAGGGAATTC  1090
      ||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCTTGACTGGCTAGCCAGAGAACCCTAGGGAATTC  1079


| Home | SequenceCutter | Blast | Download |