BAC Information

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BAC

Clone NameB6Ng01-245B18
Chromosome16 (Build37)
Map Location 15,171,231 - 15,172,200
singlet/doubletsinglet
Overlap genenone
Upstream geneNde1, Myh11, 0610037P05Rik, Abcc1, Gm1758, Snai2, Efcab1, LOC100042737
Downstream geneLOC665653, LOC385748, LOC100042743, LOC547302, EG632352, Ube2v2, LOC665682, Mcm4, Prkdc, 2410018G20Rik, Cebpd, 2310008H04Rik, LOC100043266, LOC224010
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245B18.bB6Ng01-245B18.g
ACCGA054078GA054079
length1,2381,155
definitionB6Ng01-245B18.b B6Ng01-245B18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ttggcggggccgcctatacgaactcactaatagggaagaggatccggcgg
aattctttgttcagttctgagccccattttttaatggggttgtttgattt
tctgaagtccaccttcttgagttctttatatatgttggatattagtcccc
tatctgatttaggataggtaaagatcctttcccaatctgttggtggtctc
tttgtcttattgacggtgtcttttgccttgcagaaactttggagtttcat
taggtcccatttgtcaattctcgatcttacagcacaagccattgctgttc
tgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccact
ttctcctctataagtttcagtgtctctggttttatgtgaagttctttgat
ccatttagatttgaccttagtacaaggagataagtatggatcgattcgca
ttcttctacatgataacaaccagttgtgccagcaccatttgttgaaaatg
ctgtctttcttccactggatggttttagctcccttgtcgaagatcaagtg
accataggtgtgtgggttcatttctgggtcttcaattctattccattggt
ctacttgtctgtctctataccagtaccatgcagtttttaccacaattgct
ctgtagtaaagctttaggtccggcatggtgattccaccagaggttctttt
atccttgagaagagtttttgctatcctaggttttttgttattccagatga
atttgcaaattgctccttctaattcgttgaagaattgagttggaattttg
atggggattgcattgaatctgtagattgcttttggcaagatagccatttt
tacaatattgatcctgccagtccatgagcatgggagatctttccatcttc
tgagatcttctttaatttctttcttcagagacttgaagtttttatcatac
agatctttcacttccttagttagagtcaccgccgagatattttatattat
tttgtgactattgaggaagggtggttgtttccctaatttctttctcagcc
ctgtttattctttgtgtagagaaggcattgacttgtttgagttaatttta
tatcagctactttcacggagctgttattcaagtttaggagtccttgggtg
gactttttaggtcacgtatattactatcatattcatctgcaagtgaattt
tgacttccctctttccatttgtattccccattgatact
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatatggagaaagaggaacactcctccattggtggga
ttgcaggcttgtacacccactctggaaatcagtctggcggttcctcagaa
aattggacatagtactaccggaggatccagcaatacctctcctgggcata
tatccagaagatgccccaactggtaagaaggacacatgctccactatgtt
catagcagccttatttataatagccagaagctggaaagaacccagatgcc
cctcaacagaggaatggatatagaaaatgtggtacatctacacaatggag
tactactcagctattaaaaagaatgaatttatgaaattcctagccaaatg
gatggacctggagggcatcatcctgagtgaggtaacacattcacaaagga
actcacacaatatgtactcactgataagtggatattagcccaaaacctag
gatacccaagatataagatacaatttcctaaacacatgaaactcaagaaa
aatgaagactgaagtgtggacactatgttctgtccaaacatgcttaagcc
gggcataatcatgaaaccctctatcccaaacagatgtatattctgcaaaa
ttttaaccagcaattttatcagagaataagaagttgtagctgatggaaga
agctcaagtgatgcaggtgcgagtgcagtgggtgcacgagtccttgcttc
tctgggacacccagctattatggaaaacagaacaacttgaatgtgggcct
ttgcactactcttatttttttttctgttgtttggagattacttctaaata
taagcttttaaagtctttttgtccctttcttatagttgcccagtgactag
taaattcattttcttgacctatagctaatgtatacttcataatgcaggtg
gtggactttgaatacagtgtgctgctgattatagggaaattgataacgat
acaatagacatggcaatatatacgagaatttcaagacaggaaccttaaga
gaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_15171231_15172200
seq2: B6Ng01-245B18.g_252_1222

seq1  TCCTCCATTGGTGGGATTGCAGGCTTGTACACCCACTCTGGAAATCAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCATTGGTGGGATTGCAGGCTTGTACACCCACTCTGGAAATCAGTC  50

seq1  TGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAAT  100

seq1  ACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACA  150

seq1  CATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGG  200

seq1  AAAGAACCCAGATGCCCCTCAACAGAGGAATGGATATAGAAAATGTGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACCCAGATGCCCCTCAACAGAGGAATGGATATAGAAAATGTGGTA  250

seq1  CATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGA  300

seq1  AATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTA  350

seq1  ACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATA  400

seq1  TTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTAAACA  450

seq1  CATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATGTTCTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATGTTCTGTC  500

seq1  CAAACATGCTTAAGCCGGGCATAATCATGAAACCCTCTATCCCAAACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATGCTTAAGCCGGGCATAATCATGAAACCCTCTATCCCAAACAGA  550

seq1  TGTATATTCTGCAAAATTTTAACCAGCAATTTTATCAGAGAATAAGAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATTCTGCAAAATTTTAACCAGCAATTTTATCAGAGAATAAGAAGT  600

seq1  TGTAGCTGATGGAAGAAGCTCAAGTGATGCAGGTGCGAGTGCAGTGGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTGATGGAAGAAGCTCAAGTGATGCAGGTGCGAGTGCAGTGGGTG  650

seq1  CACGAGTCCTTGCTTCTCTGGGACACCCAGCTATTATGGAAAACAGAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGTCCTTGCTTCTCTGGGACACCCAGCTATTATGGAAAACAGAACA  700

seq1  ACTTGAATGT-GGCCTTTGCACTACTCTTA-TTTTTTTTCTGTTGTTTGG  748
      |||||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  ACTTGAATGTGGGCCTTTGCACTACTCTTATTTTTTTTTCTGTTGTTTGG  750

seq1  AGATTACTTCTAAATATAAGCTTTTAAAGTC-TTTTGTCCC-TTCTTATA  796
      ||||||||||||||||||||||||||||||| ||||||||| ||||||||
seq2  AGATTACTTCTAAATATAAGCTTTTAAAGTCTTTTTGTCCCTTTCTTATA  800

seq1  GTTG-CCAGTGACTAGTAAAATTCA-TTTCTTGAACTTATAGCTAAATGT  844
      |||| |||||||||||| ||||||| ||||||| || ||||||| |||||
seq2  GTTGCCCAGTGACTAGT-AAATTCATTTTCTTG-ACCTATAGCT-AATGT  847

seq1  ATACTTCATAATGCAGGTG--TGACTTTG-ATACAAGTTGTTGCTGCTGA  891
      |||||||||||||||||||   ||||||| |||| |||   |||||||||
seq2  ATACTTCATAATGCAGGTGGTGGACTTTGAATAC-AGT--GTGCTGCTGA  894

seq1  TTATA-GGAAATAGATAACAGATAACAATAGACAATGGATATATATAGGA  940
      ||||| |||||| |||||| ||| ||||||||| ||||  ||||||| ||
seq2  TTATAGGGAAATTGATAAC-GAT-ACAATAGAC-ATGGCAATATATACGA  941

seq1  GATATAAAAGACAGGGACATAAAGAGAAAG  970
      ||  |  |||||||| || | |||||||||
seq2  GAATTTCAAGACAGGAACCTTAAGAGAAAG  971