BAC Information

Click to search

BAC

Clone NameB6Ng01-245K21
Chromosome16 (Build37)
Map Location 64,868,768 - 65,005,013
singlet/doubletdoublet
Overlap geneLOC668242, LOC100043815, LOC677448, Htr1f
Upstream geneLOC100043540, Ckt2, 4930453N24Rik, Zfp654, LOC433036, Cggbp1
Downstream geneLOC668247, LOC672931, Pou1f1, Chmp2b, EG383186, Vgll3, LOC664846
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245K21.bB6Ng01-245K21.g
ACCGA054503GA054504
length8321,065
definitionB6Ng01-245K21.b B6Ng01-245K21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,004,470 - 65,005,013)(64,868,768 - 64,869,843)
sequence
gaattccttctgtaggtttatagttttcaaaacctactttaacaagggtg
cttaaatgctttaacctcccaaatagcctaacaaccaaaggtatgggagg
aagatggttaataggacaagggggggcgggggttggacctgcttagaagt
agttctttgaggtgattcaaatcttcagtgtcagcaatccagcccactag
ccaaacaccacaccaattagaagcagcagcttaattcagaagccatgaga
cactgagactccacctatcagcacaaatcagctaaagtggaaagaagcag
ccagccagtgtacaagcagaagctctttggtgtgtttctctacaacgtca
tgacaagcaaagaccagcaaagaccagcaaggtgaaccaatgccaaacat
tgtccactgtctgttggtttacacttctactttttccaaatatcatgtgt
cctctcatgcctctgctccagcaaaggatctcgtgcccttccaccaggca
gctcccaaaaagacaccacatgcctgtgctcagtaaaacatcctctcgtg
tgtctgcttctgcaaaatgtcctctgatacgacagtttccagaaaatcac
cacatgacacaactgaatctccaacaaaaccataaattcccacttcactc
tctctttcagacttgtcatcatttaggtaatttaaatagtatcttgatat
ttctcaacttgtgtcattctttagaccttttgcatgaaacaatgaccata
aaaattaagctgctctatactccaattagtcattttctgccatcaatgtc
aaatttctttgttcaattcattcagacataat
gaattctttctttgggtctgtatttaagtttccctgtgcttgtaagaaca
ccattcacgctgaactaggaacattttaatgctttccaacttaattaagt
ctgtgctctgttctagagatacttcttaggtggtgaagaattatctccgg
attaactccactgtaaatggaaaatatctatcacaggtttaaaaaaaaca
catctaatatacttaactactgcacctcacagcttagcagcacagtgtgc
ttaaattatctgatgtttatccttgtactcatgcagctaagtgttaacta
tgtattcctacccactgctacccagcatgacaagaaagcaccacactaca
aaatccagggaaaaaaattaaaaatgaagcattttttttcttcacaaaca
taaagtgaaagctgaaagctgtgataccataaggcaagctactgcaactc
ggtcatctgtatttcaaaaccgagtcctagtcacagcttctggcatttgt
tttgggaggggacaccattcaatccatcataacagtttcactcactgact
ataaacaaacaaacaaataaacaacaacaacaacaaagttttccatagtc
gcagcaagatggcaaaggagatggcggagctccatcttgcttgctgaacc
tagtcaagaatgtctcgatggtgctttcgagaccatggtaataaaaccag
atcataaattatcagcaggctctagatggatagtgaagaacatgctgaag
atttagcaaatcaagaagatgtagtgtgagatgaaacagagggaaaactt
aaagcccacagccctgcctttcaaagaggaaggatctctgaagaaactgt
cgctggggtatcaggaaaggtgtctgcagtgccacagataaaagaatgca
gaaaaaactgaagaattcaggttattgaggtggtttcatgagtatggcca
aatgggctcagatgtttggatgtttgatctccagttactagactgtttat
gacgactaggagtgggtccttctcagagactggttcactaggggtggatt
ttgagttcaaagccg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_65004470_65005013
seq2: B6Ng01-245K21.b_328_875 (reverse)

seq1  ATTATGTCTGAATGAATTGAACAAAG-AATTTGACATTGATGGCAG-AAA  48
      |||||||||||||||||||||||||| ||||||||||||||||||| |||
seq2  ATTATGTCTGAATGAATTGAACAAAGAAATTTGACATTGATGGCAGAAAA  50

seq1  TGACTAATTGGAGTATAGAGCAGCT--AATTTTATGGTCATTGTTTCATG  96
      |||||||||||||||||||||||||  | |||||||||||||||||||||
seq2  TGACTAATTGGAGTATAGAGCAGCTTAATTTTTATGGTCATTGTTTCATG  100

seq1  CAAAAGGTCTAAAGAATGACACAAGTTGAGAAATATCAAGATACTATTTA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGTCTAAAGAATGACACAAGTTGAGAAATATCAAGATACTATTTA  150

seq1  AATTACCTAAATGATGACAAGTCTGAAAGAGAGAGTGAAGTGGGAATTTA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCTAAATGATGACAAGTCTGAAAGAGAGAGTGAAGTGGGAATTTA  200

seq1  TGGTTTTGTTGGAGATTCAGTTGTGTCATGTGGTGATTTTCTGGAAACTG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTGTTGGAGATTCAGTTGTGTCATGTGGTGATTTTCTGGAAACTG  250

seq1  TCGTATCAGAGGACATTTTGCAGAAGCAGACACACGAGAGGATGTTTTAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTATCAGAGGACATTTTGCAGAAGCAGACACACGAGAGGATGTTTTAC  300

seq1  TGAGCACAGGCATGTGGTGTCTTTTTGGGAGCTGCCTGGTGGAAGGGCAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACAGGCATGTGGTGTCTTTTTGGGAGCTGCCTGGTGGAAGGGCAC  350

seq1  GAGATCCTTTGCTGGAGCAGAGGCATGAGAGGACACATGATATTTGGAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCTTTGCTGGAGCAGAGGCATGAGAGGACACATGATATTTGGAAA  400

seq1  AAGTAGAAGTGTAAACCAACAGACAGTGGACAATGTTTGGCATTGGTTCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAAGTGTAAACCAACAGACAGTGGACAATGTTTGGCATTGGTTCA  450

seq1  CCTTGCTGGTCTTTGCTGGTCTTTGCTTGTCATGACGTTGTAGAGAAACA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTGGTCTTTGCTGGTCTTTGCTTGTCATGACGTTGTAGAGAAACA  500

seq1  CACCAAAGAGCTTCTGCTTGTACACTGGCTGGCTGCTTCTTTCCACTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAAGAGCTTCTGCTTGTACACTGGCTGGCTGCTTCTTTCCACTT  548

seq1: chr16_64868768_64869843
seq2: B6Ng01-245K21.g_67_1131

seq1  GAATTCTTTCTTTGGGTCTGTATTTAAGTTTCCCTGTGCTTGTAAGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTTTGGGTCTGTATTTAAGTTTCCCTGTGCTTGTAAGAACA  50

seq1  CCATTCACGCTGAACTAGGAACATTTTAATGCTTTCCAACTTAATTAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCACGCTGAACTAGGAACATTTTAATGCTTTCCAACTTAATTAAGT  100

seq1  CTGTGCTCTGTTCTAGAGATACTTCTTAGGTGGTGAAGAATTATCTCCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTCTGTTCTAGAGATACTTCTTAGGTGGTGAAGAATTATCTCCGG  150

seq1  ATTAACTCCACTGTAAATGGAAAATATCTATCACAGGTTTAAAAAAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTCCACTGTAAATGGAAAATATCTATCACAGGTTTAAAAAAAACA  200

seq1  CATCTAATATACTTAACTACTGCACCTCACAGCTTAGCAGCACAGTGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAATATACTTAACTACTGCACCTCACAGCTTAGCAGCACAGTGTGC  250

seq1  TTAAATTATCTGATGTTTATCCTTGTACTCATGCAGCTAAGTGTTAACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTATCTGATGTTTATCCTTGTACTCATGCAGCTAAGTGTTAACTA  300

seq1  TGTATTCCTACCCACTGCTACCCAGCATGACAAGAAAGCACCACACTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCCTACCCACTGCTACCCAGCATGACAAGAAAGCACCACACTACA  350

seq1  AAATCCAGGGAAAAAAATTAAAAATGAAGCATTTTTTTTCTTCACAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAGGGAAAAAAATTAAAAATGAAGCATTTTTTTTCTTCACAAACA  400

seq1  TAAAGTGAAAGCTGAAAGCTGTGATACCATAAGGCAAGCTACTGCAACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGAAAGCTGAAAGCTGTGATACCATAAGGCAAGCTACTGCAACTC  450

seq1  GGTCATCTGTATTTCAAAACCGAGTCCTAGTCACAGCTTCTGGCATTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATCTGTATTTCAAAACCGAGTCCTAGTCACAGCTTCTGGCATTTGT  500

seq1  TTTGGGAGGGGACACCATTCAATCCATCATAACAGTTTCACTCACTGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGAGGGGACACCATTCAATCCATCATAACAGTTTCACTCACTGACT  550

seq1  ATAAACAAACAAACAAATAAACAACAACAACAACAAAGTTTTCCATAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAAACAAACAAATAAACAACAACAACAACAAAGTTTTCCATAGTC  600

seq1  GCAGCAAGATGGCAAAGGAGATGGCGGAGCTCCATCTTGCTTGCTGAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAAGATGGCAAAGGAGATGGCGGAGCTCCATCTTGCTTGCTGAACC  650

seq1  TAGTCAAGAATGTCTCGATGGTGCTTTCGAGACCATGGTAATAAAACCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAAGAATGTCTCGATGGTGCTTTCGAGACCATGGTAATAAAACCAG  700

seq1  ATCATAAATTATCAGCAGGCTCTAGATGGATAGTGAAGAACATGCTGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAAATTATCAGCAGGCTCTAGATGGATAGTGAAGAACATGCTGAAG  750

seq1  ATTTAGCAAATCAAGAAGATGTAGTGTGAGATGAAACAGAGGGAAAACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCAAATCAAGAAGATGTAGTGTGAGATGAAACAGAGGGAAAACTT  800

seq1  AAAGCCCACAGCCCTGCCTTTCAAAGAGGAAGGATCTCTGAAGAAACTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCACAGCCCTGCCTTTCAAAGAGGAAGGATCTCTGAAGAAACTGT  850

seq1  CGCTGGGGTATCAGGAAAGGTGTCTGCAGTGCCACAGATAAAAAGAATGC  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CGCTGGGGTATCAGGAAAGGTGTCTGCAGTGCCACAGAT-AAAAGAATGC  899

seq1  AGAAAAAACTGAAGAATTCAGGGTTATTGAGGTGGTTTCAATGAGTATGG  950
      |||||||||||||||||||| |||||||||||||||||| ||||||||||
seq2  AGAAAAAACTGAAGAATTCA-GGTTATTGAGGTGGTTTC-ATGAGTATGG  947

seq1  CCCAAATGGGCTCAGATGTTTGGATGTTTGATCTCCAGTTACTAGACTGT  1000
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CCAAATGGGCTCAGATGTTTGGATGTTTGATCTCCAGTTACTAGACTGT  996

seq1  TTATGAAGGACTAGGAAGTGGG-CCTTCTCAGAGGACCTGTGTCACTAGG  1049
      ||||| | ||||||| |||||| |||||||||||   |||  |||||| |
seq2  TTATG-ACGACTAGG-AGTGGGTCCTTCTCAGAG--ACTGGTTCACTA-G  1041

seq1  GGGTGGGTTTTGAGGTTTCAAAAGCCG  1076
      |||||| |||||||  ||| |||||||
seq2  GGGTGGATTTTGAG--TTC-AAAGCCG  1065