BAC Information

Click to search

BAC

Clone NameB6Ng01-246I07
Chromosome16 (Build37)
Map Location 22,234,299 - 22,314,325
singlet/doubletdoublet
Overlap geneEG666421, Sfrs10, LOC100043507
Upstream gene6430590I03Rik, Vps8, 2510009E07Rik, Ehhadh, LOC100043489, LOC546659, Map3k13, LOC624037, Tmem41a, Liph, Senp2, EG239760, Igf2bp2, EG545152
Downstream geneEtv5, Dgkg, LOC671242, LOC666459, Crygs, Tbccd1, Dnajb11, Ahsg, Fetub, Hrg, Kng2, LOC624311, LOC666486, LOC666489, Kng1, LOC666493, Eif4a2, Rfc4, Adipoq, LOC100043541, EG625835, BC106179, St6gal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246I07.bB6Ng01-246I07.g
ACCGA055114GA055115
length1,111633
definitionB6Ng01-246I07.b B6Ng01-246I07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,234,299 - 22,235,408)(22,313,693 - 22,314,325)
sequence
gaattcagttttagttaaaatgtacttcaagaccatgattaatgttctac
ctaaatacgataaggtgtattcttcgtttttcccatgttgagagtcggta
taagtgagaaggccgacttgctgatagtttcagtcaagccttttgtaata
ttactgatttgttaaaaattatttgcttgcatgtgtgtatgatatgtggg
agccggcacgcacatgccagaacgtgtggaggtcagaggacaatgtctgg
gagtcagttttcacccaccaccttgttgtgagtcagggtgtctccttgtt
ccagttgcactgtggatgttgcacccaccctggacgtgacgtccattatc
gtgcagataatggcctgtgtgcttctggacaattctatctctacctccca
tccctggaagaagggtgggattacacatgcctgcggtcatacccagcttt
cttcttttttaaatgtgggtgccagaggtcaaaccaggccatcaggtttc
catggcaacacgcattcccagggagcagctcagcagctcctggttttgtt
tctcaacatctacaactgtaaagttttgtttttccttttgtcagttttgt
tttgtgtttgtaaatctgtcatacttcatccgtacagtaactgcattctc
cttacaaactgaccatttattctaataaaatgcctgtgtctacaataatc
tatcttgaagtctgttgttcatatcagatttattgtttttgatatgttaa
tgttaagattattatgttgtttgatgtttagataatgaaatattctagcc
tttgaaaagaatttgttgcttatagaagtttttgtaagatttagtgtttc
tgtagtagagttttccacctatatgcctaaagattgtcgtttgttaagta
tatcttgaatttttcagtaagcatacaaatattttattgttctactttat
tacacatagatcattgtactttattggcatatcttaacacatgcatttgt
tttttatcaagtttgataattattgtctttttgattagcatacctaagga
gcttacagttttccttatctttccttgcactggggacatattcaggacct
tgcacagccaa
gaattccgtggaaggcaccacatccaggagtgagtacatgagcaacacag
cttgaagtcaacagatcactaaaagtaaaatggatcggaagttagggggc
aggagtagagtatgaatataatcaaataattgtatgaaagtttcaaagaa
ttaaaatttgtttacagtgagaaaacaggctgggtgtggtggcttgagaa
tttggtcacagcacaggaggaagcaggttagttacaagttcaaggccacc
tgagtccacagagcagattttaggtcagctatggctacatagtgagacac
tatctcaaagggacaggaagaggaggaggaggagcaggagaaggaagaga
agccaaaacaaccagaaaacagaacaaggtgccctgtgagagattcggcc
ttgagttgacccttgttgaattttaggagctgctatcgaggaaagtgggg
aatgctgggtacgtggaggaagtgctattagccaggacaggaagtcagga
actaccaatttctccaaccggaaggtggtgagcctgctagtcagagaacc
atagagctgagacgatgggctaagggtttcacagaacagtcttttccctt
gtgttttgttgtttgtttgggtgggtggtgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_22234299_22235408
seq2: B6Ng01-246I07.b_46_1156

seq1  GAATTCAGTTTTAGTTAAAATGTACTTCAAGACCATGATTAATGTTCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTTAGTTAAAATGTACTTCAAGACCATGATTAATGTTCTAC  50

seq1  CTAAATACGATAAGGTGTATTCTTCGTTTTTCCCATGTTGAGAGTCGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATACGATAAGGTGTATTCTTCGTTTTTCCCATGTTGAGAGTCGGTA  100

seq1  TAAGTGAGAAGGCCGACTTGCTGATAGTTTCAGTCAAGCCTTTTGTAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGAGAAGGCCGACTTGCTGATAGTTTCAGTCAAGCCTTTTGTAATA  150

seq1  TTACTGATTTGTTAAAAATTATTTGCTTGCATGTGTGTATGATATGTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGATTTGTTAAAAATTATTTGCTTGCATGTGTGTATGATATGTGGG  200

seq1  AGCCGGCACGCACATGCCAGAACGTGTGGAGGTCAGAGGACAATGTCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGGCACGCACATGCCAGAACGTGTGGAGGTCAGAGGACAATGTCTGG  250

seq1  GAGTCAGTTTTCACCCACCACCTTGTTGTGAGTCAGGGTGTCTCCTTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGTTTTCACCCACCACCTTGTTGTGAGTCAGGGTGTCTCCTTGTT  300

seq1  CCAGTTGCACTGTGGATGTTGCACCCACCCTGGACGTGACGTCCATTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTGCACTGTGGATGTTGCACCCACCCTGGACGTGACGTCCATTATC  350

seq1  GTGCAGATAATGGCCTGTGTGCTTCTGGACAATTCTATCTCTACCTCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGATAATGGCCTGTGTGCTTCTGGACAATTCTATCTCTACCTCCCA  400

seq1  TCCCTGGAAGAAGGGTGGGATTACACATGCCTGCGGTCATACCCAGCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGAAGAAGGGTGGGATTACACATGCCTGCGGTCATACCCAGCTTT  450

seq1  CTTCTTTTTTAAATGTGGGTGCCAGAGGTCAAACCAGGCCATCAGGTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTTTAAATGTGGGTGCCAGAGGTCAAACCAGGCCATCAGGTTTC  500

seq1  CATGGCAACACGCATTCCCAGGGAGCAGCTCAGCAGCTCCTGGTTTTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCAACACGCATTCCCAGGGAGCAGCTCAGCAGCTCCTGGTTTTGTT  550

seq1  TCTCAACATCTACAACTGTAAAGTTTTGTTTTTCCTTTTGTCAGTTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACATCTACAACTGTAAAGTTTTGTTTTTCCTTTTGTCAGTTTTGT  600

seq1  TTTGTGTTTGTAAATCTGTCATACTTCATCCGTACAGTAACTGCATTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTTTGTAAATCTGTCATACTTCATCCGTACAGTAACTGCATTCTC  650

seq1  CTTACAAACTGACCATTTATTCTAATAAAATGCCTGTGTCTACAATAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAAACTGACCATTTATTCTAATAAAATGCCTGTGTCTACAATAATC  700

seq1  TATCTTGAAGTCTGTTGTTCATATCAGATTTATTGTTTTTGATATGTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGAAGTCTGTTGTTCATATCAGATTTATTGTTTTTGATATGTTAA  750

seq1  TGTTAAGATTATTATGTTGTTTGATGTTTAGATAATGAAATATTCTAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGATTATTATGTTGTTTGATGTTTAGATAATGAAATATTCTAGCC  800

seq1  -TTGAAAAGAA-TTGTTGCTTATAGAAGTTTTTGTAAGA-TTAGTGTTTC  847
       |||||||||| ||||||||||||||||||||||||||| ||||||||||
seq2  TTTGAAAAGAATTTGTTGCTTATAGAAGTTTTTGTAAGATTTAGTGTTTC  850

seq1  TGTAGTAGAGTTTTCCACCTATATGCCTAAAGATTGTCGTTTGTTAAGTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTAGAGTTTTCCACCTATATGCCTAAAGATTGTCGTTTGTTAAGTA  900

seq1  TATCTTGAATTTTTCAGTAAGCATACAAAATATTTTATTGTTCTACTTTA  947
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TATCTTGAATTTTTCAGTAAGCATAC-AAATATTTTATTGTTCTACTTTA  949

seq1  ATACACATAGATCATTGTACTTTATTGGCATATCTTAAACAACATGCAAT  997
       |||||||||||||||||||||||||||||||||||||   ||||||| |
seq2  TTACACATAGATCATTGTACTTTATTGGCATATCTTAA--CACATGCATT  997

seq1  TGTTTTTTAATCAAGTTTGATAAATTATTGTC-TTTTGATTAGCATAACT  1046
      |||||||| |||||||||||| |||||||||| |||||||||||||| ||
seq2  TGTTTTTT-ATCAAGTTTGAT-AATTATTGTCTTTTTGATTAGCATACCT  1045

seq1  AAGGAGCTTACAG-TTTCCCTATCCTTCC-TGCACTGGGGACCATA-TCA  1093
      ||||||||||||| ||||| |||| |||| ||||||||||| |||| |||
seq2  AAGGAGCTTACAGTTTTCCTTATCTTTCCTTGCACTGGGGA-CATATTCA  1094

seq1  GGGCTTTGCACAGCCAA  1110
      || | ||||||||||||
seq2  GGACCTTGCACAGCCAA  1111

seq1: chr16_22313693_22314325
seq2: B6Ng01-246I07.g_68_700 (reverse)

seq1  ACCCACCACCCACCCAAACAAACAACAAAACACAAGGGAAAAGACTGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCACCCACCCAAACAAACAACAAAACACAAGGGAAAAGACTGTTC  50

seq1  TGTGAAACCCTTAGCCCATCGTCTCAGCTCTATGGTTCTCTGACTAGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAACCCTTAGCCCATCGTCTCAGCTCTATGGTTCTCTGACTAGCAG  100

seq1  GCTCACCACCTTCCGGTTGGAGAAATTGGTAGTTCCTGACTTCCTGTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACCACCTTCCGGTTGGAGAAATTGGTAGTTCCTGACTTCCTGTCCT  150

seq1  GGCTAATAGCACTTCCTCCACGTACCCAGCATTCCCCACTTTCCTCGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAATAGCACTTCCTCCACGTACCCAGCATTCCCCACTTTCCTCGATA  200

seq1  GCAGCTCCTAAAATTCAACAAGGGTCAACTCAAGGCCGAATCTCTCACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTCCTAAAATTCAACAAGGGTCAACTCAAGGCCGAATCTCTCACAG  250

seq1  GGCACCTTGTTCTGTTTTCTGGTTGTTTTGGCTTCTCTTCCTTCTCCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCTTGTTCTGTTTTCTGGTTGTTTTGGCTTCTCTTCCTTCTCCTGC  300

seq1  TCCTCCTCCTCCTCTTCCTGTCCCTTTGAGATAGTGTCTCACTATGTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCCTCCTCTTCCTGTCCCTTTGAGATAGTGTCTCACTATGTAGC  350

seq1  CATAGCTGACCTAAAATCTGCTCTGTGGACTCAGGTGGCCTTGAACTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCTGACCTAAAATCTGCTCTGTGGACTCAGGTGGCCTTGAACTTGT  400

seq1  AACTAACCTGCTTCCTCCTGTGCTGTGACCAAATTCTCAAGCCACCACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAACCTGCTTCCTCCTGTGCTGTGACCAAATTCTCAAGCCACCACAC  450

seq1  CCAGCCTGTTTTCTCACTGTAAACAAATTTTAATTCTTTGAAACTTTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGTTTTCTCACTGTAAACAAATTTTAATTCTTTGAAACTTTCAT  500

seq1  ACAATTATTTGATTATATTCATACTCTACTCCTGCCCCCTAACTTCCGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTATTTGATTATATTCATACTCTACTCCTGCCCCCTAACTTCCGAT  550

seq1  CCATTTTACTTTTAGTGATCTGTTGACTTCAAGCTGTGTTGCTCATGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTACTTTTAGTGATCTGTTGACTTCAAGCTGTGTTGCTCATGTAC  600

seq1  TCACTCCTGGATGTGGTGCCTTCCACGGAATTC  633
      |||||||||||||||||||||||||||||||||
seq2  TCACTCCTGGATGTGGTGCCTTCCACGGAATTC  633