BAC Information

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BAC

Clone NameB6Ng01-246L19
Chromosome16 (Build37)
Map Location 32,991,054 - 33,116,645
singlet/doubletdoublet
Overlap geneLrch3, Iqcg, Rpl35a, Lmln
Upstream geneSenp5, Pak2, Pigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19, LOC385820, Tfrc, Tnk2, ENSMUSG00000075265, LOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1, EG625660
Downstream geneLOC638791, Osbpl11, Snx4, Zfp148, Slc12a8, 4632417D23Rik, Heg1, Muc13, Itgb5, Umps, Kalrn, LOC100043670
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246L19.bB6Ng01-246L19.g
ACCGA055267GA055268
length1,1731,151
definitionB6Ng01-246L19.b B6Ng01-246L19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,991,054 - 32,992,234)(33,115,502 - 33,116,645)
sequence
gaattcaaccatttataaaattacttttcccatcatgttttatgctactt
tctttttttttttttttttttatgcaaaagtgttgtcggtagtcacttct
gccttaagtgttagacactgccttcacatgtgctgagagcaacagtgctt
tagaggctcctacaatataacctgcactgggctcaggattctgtgcattc
tactgccttccttcccactaagatggacaaagcacatattaactgggcag
tcttaaagtgaccatgaggaccagcctctgaggtattagcagaatttcac
tgccacgaggagtgaaagcttcatttatgtaggaaatgccatggtttctg
atgccggttggttatcttgctcagttctcacagcaatcttaaaaactatg
gtttagtgaggcaggtgtcttacccatatgtggcttgtcaaaggtcataa
gctggtaagtcctggtctgtctttgaatctaattcaaggcctgtagtaaa
tacccatgctggattgcctgccatgctaaaactgaagggatgataggaaa
ccaaagatgaaatttaataacacatagaataagtgtctagaagtttttgt
caaagaaaagtagcatttggaaaaacaacaatagcaaaatacccttagca
taaaatctgaagtagcagttgtcaaaaacacgaaatcttttattttggct
gttggtgctcaggcctggtttcctgaattaggtggccttgaaaatcaaat
ctttgggtgttgtaatgcgctcctgtatcccagcactgaggaggtgagca
tgagcaagaggttgcctcaagttcaaggctcatcctgcactacaaaatct
agttgaaggcaagcttagactatgtagcaaggcccaacacccaaataaat
agcaaattaaagcagaatccacattttctttgtatgataagggatatcca
gccaacactctacaaactctgggcagtagagtaggagattcggaattcaa
ggtcactcacttctatctggggatggagggtgaagaaaaaacttaatttt
aggtcatgttttaatcaaggtcttctgatctcagacctgttctcaagggc
ttaatttcaatgcctgcttaagtctaatttgaatgattctgacggagcct
tcggtgtgcctgggactgctcta
gaattccaattggtggtagtaggtcttttccttttttctccctcaagatt
tatttctgtgtctctgtgtgtatgtctgcatgccacatgtgtagggttgc
ctacaggggccagagggaggtttggggtcctgtagaattggagttacagg
cagttgtgagccacctgacatgggtgctgggcacgaaactcaggtctgct
gggagagtagaaggcacagtttgagaggagccacatcctctcaaactgtg
agctcggataaaactctactgcattaggttgcttcttatgagggattcag
tcatgacggcaagcaaagtaactaacctttctatgttaaacttctatgct
gaggaccaagtccagggcctcacagccctctaagactgagctatttcccc
tgtgccctggagttactcttaaccaaccactgcagctgtgctgggctgag
gtctacaatacaggcgctgtcctccagcagcttctaagaaaagaatattt
tattaaatctttgagaatttcatacagggcactgtgatcatattcacctc
ctcacccatctcctcttggatcccctatctcttctagtatctctaactga
ggaataagagtgggatacaaatgttttagttgtgtcattcgggaggtgga
gacatgaggtcaggagttcaagaccagcctcagctacatgtcgagtttga
agctgcctgggctgcatgagatcctgtaaaaataaagaaatgtaaccaac
aaactgtttgtgattgagacatgaaaaatcgagaaaataagcttaggata
aacatcaaaaagtttcatagaagaagtgtaatttatgtcctggagatagg
acaggctttggggtgacaatgaggtagacatttataatctgggaaagaga
ttgcacaagaaatgagaaaaatgatgtaagagtggtgttcataggaacga
acatttcttgggttaaactttgtctttactataaggatcttctcagaagc
agagagacagattggtcgatacacaagtagaagcttaactttagtaagtc
ctcagtgaagctgaaagaatggcttcagagttaccaagcactgtactgtc
tctttcagaaagtcctggattcaattcccagcaacgacatgtagctcaca
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_32991054_32992234
seq2: B6Ng01-246L19.b_44_1216

seq1  GAATTCAACCATTTATAAAATTACTTTTCCCATCATGTTTTATGCTACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCATTTATAAAATTACTTTTCCCATCATGTTTTATGCTACTT  50

seq1  TCTTTTTTTTTTTTTTTTTTTATGCAAAAGTGTTGTCGGTAGTCACTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTTTTTTTTTTTTTATGCAAAAGTGTTGTCGGTAGTCACTTCT  100

seq1  GCCTTAAGTGTTAGACACTGCCTTCACATGTGCTGAGAGCAACAGTGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAAGTGTTAGACACTGCCTTCACATGTGCTGAGAGCAACAGTGCTT  150

seq1  TAGAGGCTCCTACAATATAACCTGCACTGGGCTCAGGATTCTGTGCATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGCTCCTACAATATAACCTGCACTGGGCTCAGGATTCTGTGCATTC  200

seq1  TACTGCCTTCCTTCCCACTAAGATGGACAAAGCACATATTAACTGGGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCCTTCCTTCCCACTAAGATGGACAAAGCACATATTAACTGGGCAG  250

seq1  TCTTAAAGTGACCATGAGGACCAGCCTCTGAGGTATTAGCAGAATTTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAGTGACCATGAGGACCAGCCTCTGAGGTATTAGCAGAATTTCAC  300

seq1  TGCCACGAGGAGTGAAAGCTTCATTTATGTAGGAAATGCCATGGTTTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACGAGGAGTGAAAGCTTCATTTATGTAGGAAATGCCATGGTTTCTG  350

seq1  ATGCCGGTTGGTTATCTTGCTCAGTTCTCACAGCAATCTTAAAAACTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCGGTTGGTTATCTTGCTCAGTTCTCACAGCAATCTTAAAAACTATG  400

seq1  GTTTAGTGAGGCAGGTGTCTTACCCATATGTGGCTTGTCAAAGGTCATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGTGAGGCAGGTGTCTTACCCATATGTGGCTTGTCAAAGGTCATAA  450

seq1  GCTGGTAAGTCCTGGTCTGTCTTTGAATCTAATTCAAGGCCTGTAGTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTAAGTCCTGGTCTGTCTTTGAATCTAATTCAAGGCCTGTAGTAAA  500

seq1  TACCCATGCTGGATTGCCTGCCATGCTAAAACTGAAGGGATGATAGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATGCTGGATTGCCTGCCATGCTAAAACTGAAGGGATGATAGGAAA  550

seq1  CCAAAGATGAAATTTAATAACACATAGAATAAGTGTCTAGAAGTTTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGATGAAATTTAATAACACATAGAATAAGTGTCTAGAAGTTTTTGT  600

seq1  CAAAGAAAAGTAGCATTTGGAAAAACAACAATAGCAAAATACCCTTAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAAAGTAGCATTTGGAAAAACAACAATAGCAAAATACCCTTAGCA  650

seq1  TAAAATCTGAAGTAGCAGTTGTCAAAAACACGAAATCTTTTATTTTGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCTGAAGTAGCAGTTGTCAAAAACACGAAATCTTTTATTTTGGCT  700

seq1  GTTGGTGCTCAGGCCTGGTTTCCTGAATTAGGTGGCCTTGAAAATCAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTGCTCAGGCCTGGTTTCCTGAATTAGGTGGCCTTGAAAATCAAAT  750

seq1  CTTTGGGTGTTGTAATGCGCTCCTGTATCCCAGCACTGAGGAGGTGAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGTGTTGTAATGCGCTCCTGTATCCCAGCACTGAGGAGGTGAGCA  800

seq1  TGAGCAAGAGGTTGCCTCAAGTTCAAGGC-CATCCTGCACTACAAAACCT  849
      ||||||||||||||||||||||||||||| ||||||||||||||||| ||
seq2  TGAGCAAGAGGTTGCCTCAAGTTCAAGGCTCATCCTGCACTACAAAATCT  850

seq1  AGTTGAAGGCAAGCTTAGACTATGTAGCAAGGCCCAAACACCCAAATAAA  899
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGTTGAAGGCAAGCTTAGACTATGTAGCAAGGCCC-AACACCCAAATAAA  899

seq1  TAGCAAAATTAAAGCAGAATCCACA-TTTCTTTGTATGATAAGGAATATC  948
      |||| |||||||||||||||||||| |||||||||||||||||| |||||
seq2  TAGC-AAATTAAAGCAGAATCCACATTTTCTTTGTATGATAAGGGATATC  948

seq1  CAGCCAACACTCTACAAACTCTGGGCAGTAGAGTTAGGAGAATTCGGAAT  998
      ||||||||||||||||||||||||||||||||| |||||| |||||||||
seq2  CAGCCAACACTCTACAAACTCTGGGCAGTAGAG-TAGGAG-ATTCGGAAT  996

seq1  TCAAGGTCACCCAC-TCTATCTGGGGATTGA-GGTGAAGAAAAAAACTTA  1046
      |||||||||| ||| ||||||||||||| || ||||||| ||||||||||
seq2  TCAAGGTCACTCACTTCTATCTGGGGATGGAGGGTGAAG-AAAAAACTTA  1045

seq1  AATTTTTAAGTCATGTTTTAAATCATGTC-TCTGATCTCAGAACTGTTCT  1095
      |  ||||| ||||||||||||   | ||| |||||||||||| |||||||
seq2  A--TTTTAGGTCATGTTTTAATCAAGGTCTTCTGATCTCAGACCTGTTCT  1093

seq1  TCAAAGGGCTT-ATTTC-ATG-CTGCCCTTAAAATCTAAATTTTTAAAAT  1142
         |||||||| ||||| ||| ||||   | || |||||   ||| ||  
seq2  --CAAGGGCTTAATTTCAATGCCTGC---TTAAGTCTAA---TTTGAA--  1133

seq1  AGATCCTGACCGAAGCCTTC-GTGTG-CTCTGACTGCTCTA  1181
       ||| |||| || ||||||| ||||| ||  ||||||||||
seq2  TGATTCTGA-CGGAGCCTTCGGTGTGCCTGGGACTGCTCTA  1173

seq1: chr16_33115502_33116645
seq2: B6Ng01-246L19.g_66_1216 (reverse)

seq1  TTGTGAGCTACCATGTCGTTGCTGGGAATTGAACTCAGGAC-CTCTGGAA  49
      |||||||||| ||||||||||||||||||||||  ||||||  |||| ||
seq2  TTGTGAGCTA-CATGTCGTTGCTGGGAATTGAATCCAGGACTTTCTGAAA  49

seq1  GAG-CAGT-CAGTGCTTGTAACCTCTG-AGCCATCTCTCCAGCCTCACTT  96
      ||| |||| |||||||||  | ||||| ||||||   | |||| ||||| 
seq2  GAGACAGTACAGTGCTTGGTAACTCTGAAGCCATTCTTTCAGCTTCACTG  99

seq1  GAGAC-TACTAA--GTCAGCTTCTACTTGTGTATCGACCAATCTGTCCTC  143
        ||| ||||||   | ||||||||||||||||||||||||||||| |||
seq2  AGGACTTACTAAAGTTAAGCTTCTACTTGTGTATCGACCAATCTGT-CTC  148

seq1  TCTTGCTTCTGAGAAG-TCCATATTAGTAAAGACAAAGTTT-ACCCAAG-  190
      || ||||||||||||| ||| || ||||||||||||||||| ||||||| 
seq2  TC-TGCTTCTGAGAAGATCCTTA-TAGTAAAGACAAAGTTTAACCCAAGA  196

seq1  AATGTTCGTTCCTATGAACACCACTCTTACATCATTTTTCTCATTTCTTT  240
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AATGTTCGTTCCTATGAACACCACTCTTACATCATTTTTCTCATTTC-TT  245

seq1  GTGCATTCTCTTTCCCAGATTATAAATGTCTACCTCATTGTCA-CCCAAA  289
      ||||| ||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTGCAATCTCTTTCCCAGATTATAAATGTCTACCTCATTGTCACCCCAAA  295

seq1  GCCTGTCCTATCTCCAGGACAT-AATTACACTTCTTCTATGAAACTTTTT  338
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GCCTGTCCTATCTCCAGGACATAAATTACACTTCTTCTATGAAACTTTTT  345

seq1  GATGTTTATCCTAAGCTTATTTTCTCGATTTTTCATGTCTCAATCACAAA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTATCCTAAGCTTATTTTCTCGATTTTTCATGTCTCAATCACAAA  395

seq1  CAGTTTGTTGGTTACATTTCTTTATTTTTACAGGATCTCATGCAGCCCAG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGTTGGTTACATTTCTTTATTTTTACAGGATCTCATGCAGCCCAG  445

seq1  GCAGCTTCAAACTCGACATGTAGCTGAGGCTGGTCTTGAACTCCTGACCT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTTCAAACTCGACATGTAGCTGAGGCTGGTCTTGAACTCCTGACCT  495

seq1  CATGTCTCCACCTCCCGAATGACACAACTAAAACATTTGTATCCCACTCT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTCCACCTCCCGAATGACACAACTAAAACATTTGTATCCCACTCT  545

seq1  TATTCCTCAGTTAGAGATACTAGAAGAGATAGGGGATCCAAGAGGAGATG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTCAGTTAGAGATACTAGAAGAGATAGGGGATCCAAGAGGAGATG  595

seq1  GGTGAGGAGGTGAATATGATCACAGTGCCCTGTATGAAATTCTCAAAGAT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGAGGTGAATATGATCACAGTGCCCTGTATGAAATTCTCAAAGAT  645

seq1  TTAATAAAATATTCTTTTCTTAGAAGCTGCTGGAGGACAGCGCCTGTATT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAAATATTCTTTTCTTAGAAGCTGCTGGAGGACAGCGCCTGTATT  695

seq1  GTAGACCTCAGCCCAGCACAGCTGCAGTGGTTGGTTAAGAGTAACTCCAG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACCTCAGCCCAGCACAGCTGCAGTGGTTGGTTAAGAGTAACTCCAG  745

seq1  GGCACAGGGGAAATAGCTCAGTCTTAGAGGGCTGTGAGGCCCTGGACTTG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGGGGAAATAGCTCAGTCTTAGAGGGCTGTGAGGCCCTGGACTTG  795

seq1  GTCCTCAGCATAGAAGTTTAACATAGAAAGGTTAGTTACTTTGCTTGCCG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCAGCATAGAAGTTTAACATAGAAAGGTTAGTTACTTTGCTTGCCG  845

seq1  TCATGACTGAATCCCTCATAAGAAGCAACCTAATGCAGTAGAGTTTTATC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGACTGAATCCCTCATAAGAAGCAACCTAATGCAGTAGAGTTTTATC  895

seq1  CGAGCTCACAGTTTGAGAGGATGTGGCTCCTCTCAAACTGTGCCTTCTAC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCTCACAGTTTGAGAGGATGTGGCTCCTCTCAAACTGTGCCTTCTAC  945

seq1  TCTCCCAGCAGACCTGAGTTTCGTGCCCAGCACCCATGTCAGGTGGCTCA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCAGCAGACCTGAGTTTCGTGCCCAGCACCCATGTCAGGTGGCTCA  995

seq1  CAACTGCCTGTAACTCCAATTCTACAGGACCCCAAACCTCCCTCTGGCCC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCCTGTAACTCCAATTCTACAGGACCCCAAACCTCCCTCTGGCCC  1045

seq1  CTGTAGGCAACCCTACACATGTGGCATGCAGACATACACACAGAGACACA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGCAACCCTACACATGTGGCATGCAGACATACACACAGAGACACA  1095

seq1  GAAATAAATCTTGAGGGAGAAAAAAGGAAAAGACCTACTACCACCAATTG  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAATCTTGAGGGAGAAAAAAGGAAAAGACCTACTACCACCAATTG  1145

seq1  GAATTC  1144
      ||||||
seq2  GAATTC  1151