BAC Information

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BAC

Clone NameB6Ng01-247M20
Chromosome16 (Build37)
Map Location 61,042,793 - 61,170,470
singlet/doubletdoublet
Overlap genenone
Upstream geneEpha6, LOC100043804, EG668168, LOC668170
Downstream geneLOC100043524, LOC668183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247M20.bB6Ng01-247M20.g
ACCGA056043GA056044
length922760
definitionB6Ng01-247M20.b B6Ng01-247M20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,042,793 - 61,043,696)(61,169,929 - 61,170,470)
sequence
gaattctcatctgcggaataaggaatgactgagaagcacctaaaaaatgt
tcaacatccttagtcagcaggaaatgcaaatcaaaacaaccctgagattc
cacctcacaccagtcagaatggctaagatcaaaagctcaggggacagcag
atgctggcatggatgtggagaaagaggaacactcctccattcctggtggg
attgcaagctggtacaaccagtctggattatcagtttggttattcctaag
aaaactggacatagtattacctgaggacccagcaataccactcctgggca
tacacccagaagatgctccaaaatgtaataaggacacatgctccactatt
ttcatagcaactctttttcttactcctcataatttttatttgattttctt
agaattaattgtggtcactttctatggtcaaaacaccataattcacaagg
aacatgtgaatctgttagtcacataactcaaatggaacaaatttcagaat
tatatatatatatacatattttatagtatattatactataaaatatacta
tagtatatatatatatatatatatatatatatatatatagtatattagta
tattataatttaactgatagtagaatccagattagaatcatagttttaat
tataaattagtagtagtaaaaagtactcatgcagaatttaatgattcatg
gtaaggaaaattatattagtccatatcttttatgctttaaaaattttctt
ggtatatttgctggagagattggaaaattgttcagttgttaagaagttct
ggatagtttttcagaagactcattgctcaatttctcacactaacattggc
aatttagactgtctgtaatatccacttccatggaattcaatacttttctt
ttggcattcataaagtcagtgt

gaattcaggaccacatatctacagtgcaacttcagaactaaagctcaagt
atcatttctagtagtggtggaaatatttttgatagcaaaagggacaagaa
cttctgtgtgtgattgtgtctcctagtaatgtcaaaagtttcacccataa
agtctcaccaacataaatgtctaaatgtgagctgagggaagacaagagtg
atagaggtgataatttttactggagaaagcttgagagttttcaaacctac
acatagaactatagacgccaggaaactctgagagtgaaagaaataatctt
cacctgggaaaagagaagagaaaaataactggttatgcaataccaaattg
tcatcctatcacacacagatacaattaacattcaaaaatgttgtgggttt
tagtatgaatacatatgtatgcatgaatgcataaatatgtgtcttcatgt
atgtataaaatacatacacacatacaaagtatatgatatgtattatatat
gtgtgtatatttgtgtctgtgcatataagaaaattattgagaaaaagaaa
tcctgagtttgaaaaaagcaagaaggaatatatgtaagagtttggagagc
agtacaggatggggaagtagtgtaagtatattatattatattttatatta
tattatattatattatagtatcatagaagaggaaagtatttttaaaatct
tcatgctattgttaaattcttcgggaaaatggtccaaaaaaaataagttt
tttgtttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_61042793_61043696
seq2: B6Ng01-247M20.b_48_969

seq1  GAATTCTCATCTGCGGAATAAGGAATGACTGAGAAGCACCTAAAAAATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATCTGCGGAATAAGGAATGACTGAGAAGCACCTAAAAAATGT  50

seq1  TCAACATCCTTAGTCAGCAGGAAATGCAAATCAAAACAACCCTGAGATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATCCTTAGTCAGCAGGAAATGCAAATCAAAACAACCCTGAGATTC  100

seq1  CACCTCACACCAGTCAGAATGGCTAAGATCAAAAGCTCAGGGGACAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCACACCAGTCAGAATGGCTAAGATCAAAAGCTCAGGGGACAGCAG  150

seq1  ATGCTGGCATGGATGTGGAGAAAGAGGAACACTCCTCCATTCCTGGTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGCATGGATGTGGAGAAAGAGGAACACTCCTCCATTCCTGGTGGG  200

seq1  ATTGCAAGCTGGTACAACCAGTCTGGATTATCAGTTTGGTTATTCCTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAAGCTGGTACAACCAGTCTGGATTATCAGTTTGGTTATTCCTAAG  250

seq1  AAAACTGGACATAGTATTACCTGAGGACCCAGCAATACCACTCCTGGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGGACATAGTATTACCTGAGGACCCAGCAATACCACTCCTGGGCA  300

seq1  TACACCCAGAAGATGCTCCAAAATGTAATAAGGACACATGCTCCACTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCCAGAAGATGCTCCAAAATGTAATAAGGACACATGCTCCACTATT  350

seq1  TTCATAGCAACTCTTTTTCTTACTCCTCATAATTTTTATTTGATTTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGCAACTCTTTTTCTTACTCCTCATAATTTTTATTTGATTTTCTT  400

seq1  AGAATTAATTGTGGTCACTTTCTATGGTCAAAACACCATAATTCACAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAATTGTGGTCACTTTCTATGGTCAAAACACCATAATTCACAAGG  450

seq1  AACATGTGAATCTGTTAGTCACATAACTCAAATGGAACAAATTTCAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTGAATCTGTTAGTCACATAACTCAAATGGAACAAATTTCAGAAT  500

seq1  TATATATATATATACATATTTTATAGTATATTATACTATAAAATATACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATACATATTTTATAGTATATTATACTATAAAATATACTA  550

seq1  TAGTATATATATATATATATATATATATATATATATATAGTATATTAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATATATATATATATATATATATATATATATATATAGTATATTAGTA  600

seq1  TATTATAATTTAACTGATAGTAGAATCCAGATTAGAATCATAATTTTAAT  650
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TATTATAATTTAACTGATAGTAGAATCCAGATTAGAATCATAGTTTTAAT  650

seq1  TAT-AATTAGTAGTAGTAAAAAGTACTCATGCAGAA-TTAATGATTCATG  698
      ||| |||||||||||||||||||||||||||||||| |||||||||||||
seq2  TATAAATTAGTAGTAGTAAAAAGTACTCATGCAGAATTTAATGATTCATG  700

seq1  GTAAGGAAAATTATA-TAGTCCATATC-TTTATGCTTTAAAAATTT--CT  744
      ||||||||||||||| ||||||||||| ||||||||||||||||||   |
seq2  GTAAGGAAAATTATATTAGTCCATATCTTTTATGCTTTAAAAATTTTCTT  750

seq1  GGTATA-TTGCTGGAGAGATTGG-AAATTGTTCAGTTGTTAAG-AGTCCT  791
      |||||| |||||||||||||||| ||||||||||||||||||| ||| ||
seq2  GGTATATTTGCTGGAGAGATTGGAAAATTGTTCAGTTGTTAAGAAGTTCT  800

seq1  GGATAGTTTTTCAGAAGACCCA-TGCTCAA-TTCTCACACTAACA-TGGC  838
      ||||||||||||||||||| || ||||||| |||||||||||||| ||||
seq2  GGATAGTTTTTCAGAAGACTCATTGCTCAATTTCTCACACTAACATTGGC  850

seq1  AATTTAGACTGTCTGTAAT-TCCACTTCCATGG-ATTC-ATAC-TTTCTT  884
      ||||||||||||||||||| ||||||||||||| |||| |||| ||||||
seq2  AATTTAGACTGTCTGTAATATCCACTTCCATGGAATTCAATACTTTTCTT  900

seq1  TTGGCATTCAT--AGGCAGTGT  904
      |||||||||||  || ||||||
seq2  TTGGCATTCATAAAGTCAGTGT  922


seq1: chr16_61169929_61170470
seq2: B6Ng01-247M20.g_287_830 (reverse)

seq1  AAAAAACAAAAAAACTTGCTTTTTTGGACCA-TTTCCCGAAGAATTT-AC  48
      |||||||||||||  |   |||||||||||| ||||||||||||||| ||
seq2  AAAAAACAAAAAACTTATTTTTTTTGGACCATTTTCCCGAAGAATTTAAC  50

seq1  AATAGCACTAAGATTTTAAAAATACTTTCTTCTTCTATGATACTATAATA  98
      |||||||  |||||||||||||||||||| ||||||||||||||||||||
seq2  AATAGCATGAAGATTTTAAAAATACTTTCCTCTTCTATGATACTATAATA  100

seq1  TAATATAATATAATATAAAATATAATATAATATACTTACACTACTTCCCC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAATATAATATAAAATATAATATAATATACTTACACTACTTCCCC  150

seq1  ATCCTGTACTGCTCTCCAAACTCTTACATATATTCCTTCTTGCTTTTTTC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTACTGCTCTCCAAACTCTTACATATATTCCTTCTTGCTTTTTTC  200

seq1  AAACTCAGGATTTCTTTTTCTCAATAATTTTCTTATATGCACAGACACAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAGGATTTCTTTTTCTCAATAATTTTCTTATATGCACAGACACAA  250

seq1  ATATACACACATATATAATACATATCATATACTTTGTATGTGTGTATGTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACACACATATATAATACATATCATATACTTTGTATGTGTGTATGTA  300

seq1  TTTTATACATACATGAAGACACATATTTATGCATTCATGCATACATATGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATACATACATGAAGACACATATTTATGCATTCATGCATACATATGT  350

seq1  ATTCATACTAAAACCCACAACATTTTTGAATGTTAATTGTATCTGTGTGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATACTAAAACCCACAACATTTTTGAATGTTAATTGTATCTGTGTGT  400

seq1  GATAGGATGACAATTTGGTATTGCATAACCAGTTATTTTTCTCTTCTCTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGATGACAATTTGGTATTGCATAACCAGTTATTTTTCTCTTCTCTT  450

seq1  TTCCCAGGTGAAGATTATTTCTTTCACTCTCAGAGTTTCCTGGCGTCTAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGGTGAAGATTATTTCTTTCACTCTCAGAGTTTCCTGGCGTCTAT  500

seq1  AGTTCTATGTGTAGGTTTGAAAACTCTCAAGCTTTCTCCAGTAA  542
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTATGTGTAGGTTTGAAAACTCTCAAGCTTTCTCCAGTAA  544


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