BAC Information

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BAC

Clone NameB6Ng01-247N07
Chromosome16 (Build37)16 (Build37)
Map Location 94,075,395 - 94,076,54094,439,150 - 94,440,162
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040747, Setd4, LOC670912, Cbr1, EG435489, Cbr3, Dopey2, Morc3, Chaf1b, Cldn14
Downstream geneSim2, Hlcs, LOC622832, LOC100040857, Dscr6, LOC545178, Pigp, Ttc3, Dscr3, Dyrk1a, Kcnj6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247N07.bB6Ng01-247N07.g
ACCGA056065GA056066
length1,1791,036
definitionB6Ng01-247N07.b B6Ng01-247N07.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(94,075,395 - 94,076,540)(94,439,150 - 94,440,162)
sequence
gaattccaggatagccagggatacacagggaaaccctatctcaaaaacaa
acaaacaaacaaataaataaataaaatgaaaactgccaacctctttctga
gatgactgttagcaccactatgcagataataggtttaagggaggtcaaat
cttgcacccttaacacaaatactggtgcagaaaaaagttccgtttgtttt
actttataaccaccgcttcccaccagtcacataaacagagccaggagttc
cagtgctgagaaccttgctcaggtccttggcacacagggtgcgttagcag
gccagattctaactcaaagttccggtgagactcagaacgttggcggtggc
agaacctccctttgtcacataaatgcctggcttgggtccagctcgcgcct
gagtcacagcctgggtgagcgcactgaggagttcccagtctgaagggccg
cattccttttgcagcaggcttcttctaagcaagtgtctctctggactgca
catgagtaagaagaacgtgcctgaagcgtgcagccgtccgtctgcttcag
ccaccttcgcacgctaggtgcgtcaccaccacataagttgtgtgtctgac
aaccctgcacagggttgatatttctaattatgtatgaggggaggggtgta
cacatgaatgcaatgcttgaggagtccagaagagggcgtcagatcctctg
cagctggacttaacaggcagatgtgagcagactagtgcacgtgctgggaa
ccaaactcagtcctctgcaagagcagccatgttcttaactgatgagcacc
aggctcctcaatgttttggctttcgttttgtttttatgtttgataatggg
atcattcattttcccagcaagtgcaacttgctccagtctggataacttaa
taagttaattgctctatcacaagctagtctctcacataaacattaagcca
cttggcatacagtgtagcttctctgccaagtgcccttaaggctttagaaa
actaaacctctaagtatatttcactgcttaacaggccacctgcagcttca
agccttgctcttgttaccttggtgacaagttgatacacaccctttttatc
tctcagcacttagggagcttgaagtaagttagatttctctgggtctacag
aagtgacttccaggacacgcaggatctac
gaattcacaaacttgaggcagagccagaaacacagtgtggctccattgaa
taacccaagtcctggaacaggttggaagaactcagggtggttggctgtgg
atcagggagtggtggtcagcagggaggtcacagggtacctgctgaggtct
gtaggtcttgctgacaccgggtgtccatctgttcaagtccagcagacctg
ggaataccacagatagccaattttacataagaactaaagtgctgggctgt
ggtgggtaaactgaggcacttaacgacagggacactgaactggtggcctg
tctatggttgcgttgaaatgggggagtcggtaagacggacggatgactgt
atggatccatggttggtgtgcactaaagcaagtgtttataggccgtagag
tcaaggtggctgggacgggggcggagggggttgttcatgccaaaatccaa
ccttgtaatgtgtaaatatttttataatgagaaaatcaccatggaggatt
tttttaaagtagggcagtgatactatatttaaaacaaattaaaattaaaa
aaatgaatttaggtaaactgtttttgtgtttgtaaaggccgttttccgaa
gagagatgcatgtttacttctatacatgtgtggtatgcgatcttcttctc
tctttcctccctccctctctctctcttcattgtgtgttcaatctcccgtc
cttccttgaagaaaacttgtaagttccatgaaaagcacaaagtcgagctg
aggtgttgctctcggtgactttcttcaggtcttaggttgcccccaagtac
tcaaatttaaaacaaaatccttcagtctgtattctcaccctctgaaaacc
ccaggggtctatttctcgttattattcccctagtgaaaatatattaaaaa
atctaaatttgtatgccccataagtttttccactttcttcacactctcat
accacggcagcttcctgtctactgtgcctttccaagtgtgtgcaataata
ttgaggttctcccctccgggcacctggctgcctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_94075395_94076540
seq2: B6Ng01-247N07.b_46_1224

seq1  GAATTCCAGGATAGCCAGGGATACACAGGGAAACCCTATCTCAAAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGATAGCCAGGGATACACAGGGAAACCCTATCTCAAAAACAA  50

seq1  ACAAACAAACAAATAAATAAATAAAATGAAAACTGCCAACCTCTTTCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACAAATAAATAAATAAAATGAAAACTGCCAACCTCTTTCTGA  100

seq1  GATGACTGTTAGCACCACTATGCAGATAATAGGTTTAAGGGAGGTCAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACTGTTAGCACCACTATGCAGATAATAGGTTTAAGGGAGGTCAAAT  150

seq1  CTTGCACCCTTAACACAAATACTGGTGCAGAAAAAAGTTCCGTTTGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCACCCTTAACACAAATACTGGTGCAGAAAAAAGTTCCGTTTGTTTT  200

seq1  ACTTTATAACCACCGCTTCCCACCAGTCACATAAACAGAGCCAGGAGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATAACCACCGCTTCCCACCAGTCACATAAACAGAGCCAGGAGTTC  250

seq1  CAGTGCTGAGAACCTTGCTCAGGTCCTTGGCACACAGGGTGCGTTAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTGAGAACCTTGCTCAGGTCCTTGGCACACAGGGTGCGTTAGCAG  300

seq1  GCCAGATTCTAACTCAAAGTTCCGGTGAGACTCAGAACGTTGGCGGTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGATTCTAACTCAAAGTTCCGGTGAGACTCAGAACGTTGGCGGTGGC  350

seq1  AGAACCTCCCTTTGTCACATAAATGCCTGGCTTGGGTCCAGCTCGCGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCTCCCTTTGTCACATAAATGCCTGGCTTGGGTCCAGCTCGCGCCT  400

seq1  GAGTCACAGCCTGGGTGAGCGCACTGAGGAGTTCCCAGTCTGAAGGGCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACAGCCTGGGTGAGCGCACTGAGGAGTTCCCAGTCTGAAGGGCCG  450

seq1  CATTCCTTTTGCAGCAGGCTTCTTCTAAGCAAGTGTCTCTCTGGACTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTTTTGCAGCAGGCTTCTTCTAAGCAAGTGTCTCTCTGGACTGCA  500

seq1  CATGAGTAAGAAGAACGTGCCTGAAGCGTGCAGCCGTCCGTCTGCTTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTAAGAAGAACGTGCCTGAAGCGTGCAGCCGTCCGTCTGCTTCAG  550

seq1  CCACCTTCGCACGCTAGGTGCGTCACCACCACATAAGTTGTGTGTCTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTCGCACGCTAGGTGCGTCACCACCACATAAGTTGTGTGTCTGAC  600

seq1  AACCCTGCACAGGGTTGATATTTCTAATTATGTATGAGGGGAGGGGTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGCACAGGGTTGATATTTCTAATTATGTATGAGGGGAGGGGTGTA  650

seq1  CACATGAATGCAATGCTTGAGGAGTCCAGAAGAGGGCGTCAGATCCTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGAATGCAATGCTTGAGGAGTCCAGAAGAGGGCGTCAGATCCTCTG  700

seq1  CAGCTGGACTTAACAGGCAGATGTGAGCAGACTAGTGCACGTGCTGGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGACTTAACAGGCAGATGTGAGCAGACTAGTGCACGTGCTGGGAA  750

seq1  CCAAACTCAGTCCTCTGCAAGAGCAGCCATGTTCTTAACTGATGAGCACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTCAGTCCTCTGCAAGAGCAGCCATGTTCTTAACTGATGAGCACC  800

seq1  AGGCTCCTCAATGTTTTGGCTTTCGTTTTGTTTTTATG-TTGATAATGGG  849
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGGCTCCTCAATGTTTTGGCTTTCGTTTTGTTTTTATGTTTGATAATGGG  850

seq1  ATCA-TCA-TTTCCCAGCAAGTGCAAC-TGCTCCAGTCTGGATAACTTAA  896
      |||| ||| |||||||||||||||||| ||||||||||||||||||||||
seq2  ATCATTCATTTTCCCAGCAAGTGCAACTTGCTCCAGTCTGGATAACTTAA  900

seq1  TAAGTTAATTGCTCTATCACAAGCTAGTC-CTCACATAAACATT-AGCCA  944
      ||||||||||||||||||||||||||||| |||||||||||||| |||||
seq2  TAAGTTAATTGCTCTATCACAAGCTAGTCTCTCACATAAACATTAAGCCA  950

seq1  C-TGGCATACAGTGTAGC-TCTCTGCC-AGTGCC--TAAGGCTTTAG-AA  988
      | |||||||||||||||| |||||||| ||||||  ||||||||||| ||
seq2  CTTGGCATACAGTGTAGCTTCTCTGCCAAGTGCCCTTAAGGCTTTAGAAA  1000

seq1  ACTAA--CTCTAAGTATA-TTCACTGCT--ACAGGCCACCTGCAGGCTTC  1033
      |||||  ||||||||||| |||||||||  |||||||||||||| |||||
seq2  ACTAAACCTCTAAGTATATTTCACTGCTTAACAGGCCACCTGCA-GCTTC  1049

seq1  AAAGCTTGCTCT--GTACC-TGGTGACA--GTGGTACACACC--TTTTA-  1075
      ||  ||||||||   |||| ||||||||   || ||||||||  ||||| 
seq2  AAGCCTTGCTCTTGTTACCTTGGTGACAAGTTGATACACACCCTTTTTAT  1099

seq1  -TCTCAGCAC-TAGGGAGGCTG-AGGAAGTTAGATCTCT---GGTCTACA  1119
       ||||||||| |||||||  || || ||||||||| |||   ||||||||
seq2  CTCTCAGCACTTAGGGAGCTTGAAGTAAGTTAGATTTCTCTGGGTCTACA  1149

seq1  G-AGTGAGTTCCAGGACA-GCAGGA-CTAC  1146
      | ||||| |||||||||| |||||| ||||
seq2  GAAGTGACTTCCAGGACACGCAGGATCTAC  1179

seq1: chr16_94439150_94440162
seq2: B6Ng01-247N07.g_70_1105 (reverse)

seq1  GAGA-GCAGCCAGGTGCCCGGCGGGGAG--CCTC-ATATT-CTGCACACA  45
      |||| |||||||||||||||| ||||||  |||| |||||  ||||||||
seq2  GAGAGGCAGCCAGGTGCCCGGAGGGGAGAACCTCAATATTATTGCACACA  50

seq1  CTTGTAAAGG--CCGT-GACAGGAGGCTG-CGTGGTATGAG-GTGTG-AG  89
      |||| |||||  | || ||||||| |||| ||||||||||| ||||| ||
seq2  CTTGGAAAGGCACAGTAGACAGGAAGCTGCCGTGGTATGAGAGTGTGAAG  100

seq1  AAA-TG--AAAACTTTATGTGCATACAAATTTAGA-TTTTTAAAATATTT  135
      ||| ||  |||||||   | ||||||||||||||| ||||||| ||||||
seq2  AAAGTGGAAAAACTTATGGGGCATACAAATTTAGATTTTTTAATATATTT  150

seq1  TCACTAGGGGCATAAATAACGAGAAATTAGACCCCT-GGGTTTTCAGAGG  184
      |||||||||| || |||||||||||| ||||||||| |||||||||||||
seq2  TCACTAGGGGAAT-AATAACGAGAAA-TAGACCCCTGGGGTTTTCAGAGG  198

seq1  GTGAGAATACAGACTG-AGGTTTTTGTTTTAAATTTGAGTACTTGGGGGC  233
      |||||||||||||||| ||| |||||||||||||||||||||||||||||
seq2  GTGAGAATACAGACTGAAGGATTTTGTTTTAAATTTGAGTACTTGGGGGC  248

seq1  -ACCTAAGACCTG-AGGAAGTCACCGAGAGCAACACCTCAGCTCGACTTT  281
       |||||||||||| || |||||||||||||||||||||||||||||||||
seq2  AACCTAAGACCTGAAGAAAGTCACCGAGAGCAACACCTCAGCTCGACTTT  298

seq1  GTGCTTTTCATGGAACTTAC-AGTTTTCTTCAAGGAAGGACGGGAGGTTG  330
      |||||||||||||||||||| ||||||||||||||||||||||||| |||
seq2  GTGCTTTTCATGGAACTTACAAGTTTTCTTCAAGGAAGGACGGGAGATTG  348

seq1  AACACAC-ATG-AGAGAGAGAGAGGGAGGGAGG-AAGAGAGA--GAGATC  375
      ||||||| ||| ||||||||||||||||||||| ||||||||   |||||
seq2  AACACACAATGAAGAGAGAGAGAGGGAGGGAGGAAAGAGAGAAGAAGATC  398

seq1  GCATACCACACATGTATAGAAGTAAACATGCATCTCTCTTCGGAAAACGG  425
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACCACACATGTATAGAAGTAAACATGCATCTCTCTTCGGAAAACGG  448

seq1  CCTTTACAAACACAAAAACAGTTTACCTAAATTCATTTTTTTAATTTTAA  475
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACAAACACAAAAACAGTTTACCTAAATTCATTTTTTTAATTTTAA  498

seq1  TTTGTTTTAAATATAGTATCACTGCCCTACTTTAAAAAAATCCTCCATGG  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTAAATATAGTATCACTGCCCTACTTTAAAAAAATCCTCCATGG  548

seq1  TGATTTTCTCATTATAAAAATATTTACACATTACAAGGTTGGATTTTGGC  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTCTCATTATAAAAATATTTACACATTACAAGGTTGGATTTTGGC  598

seq1  ATGAACAACCCCCTCCGCCCCCGTCCCAGCCACCTTGACTCTACGGCCTA  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAACCCCCTCCGCCCCCGTCCCAGCCACCTTGACTCTACGGCCTA  648

seq1  TAAACACTTGCTTTAGTGCACACCAACCATGGATCCATACAGTCATCCGT  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACTTGCTTTAGTGCACACCAACCATGGATCCATACAGTCATCCGT  698

seq1  CCGTCTTACCGACTCCCCCATTTCAACGCAACCATAGACAGGCCACCAGT  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCTTACCGACTCCCCCATTTCAACGCAACCATAGACAGGCCACCAGT  748

seq1  TCAGTGTCCCTGTCGTTAAGTGCCTCAGTTTACCCACCACAGCCCAGCAC  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTCCCTGTCGTTAAGTGCCTCAGTTTACCCACCACAGCCCAGCAC  798

seq1  TTTAGTTCTTATGTAAAATTGGCTATCTGTGGTATTCCCAGGTCTGCTGG  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTCTTATGTAAAATTGGCTATCTGTGGTATTCCCAGGTCTGCTGG  848

seq1  ACTTGAACAGATGGACACCCGGTGTCAGCAAGACCTACAGACCTCAGCAG  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAACAGATGGACACCCGGTGTCAGCAAGACCTACAGACCTCAGCAG  898

seq1  GTACCCTGTGACCTCCCTGCTGACCACCACTCCCTGATCCACAGCCAACC  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCTGTGACCTCCCTGCTGACCACCACTCCCTGATCCACAGCCAACC  948

seq1  ACCCTGAGTTCTTCCAACCTGTTCCAGGACTTGGGTTATTCAATGGAGCC  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGAGTTCTTCCAACCTGTTCCAGGACTTGGGTTATTCAATGGAGCC  998

seq1  ACACTGTGTTTCTGGCTCTGCCTCAAGTTTGTGAATTC  1013
      ||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTGTTTCTGGCTCTGCCTCAAGTTTGTGAATTC  1036