BAC Information

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BAC

Clone NameB6Ng01-248H07
Chromosome16 (Build37)
Map Location 36,157,247 - 36,277,806
singlet/doubletdoublet
Overlap geneStfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1
Upstream geneAdcy5, Sec22a, Pdia5, Sema5b, EG546663, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta
Downstream geneEG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq, Stxbp5l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248H07.bB6Ng01-248H07.g
ACCGA056532GA056533
length1,102993
definitionB6Ng01-248H07.b B6Ng01-248H07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,157,247 - 36,158,346)(36,276,820 - 36,277,806)
sequence
gaattcatcattttggatggtctctgtgtttcacatgtctgatcccagaa
gctgcaattactgatggaattttccaatcccactaggtgaaactatgtgt
gaaggcacttaagtttattaaggattcctgaactgattccaggatgcaat
gcccaccaaaccatcacattcaaaacagaactcaatgtttctagcaagtt
attacatgttgcttaactatcatctaaataataaaaatgtaacatattat
gttttttataaaagggaaaaaggcatgcaaattatagaggtaggtttgca
atttgtcacctgattttctacgatcatgttttcctctttgaaacaaagtc
atgctggagtccaagattagtttggcttgttgtctgcttgtttgtttgtt
tctgcatttgtttcacacgtagacttgctagatgactatcctgcaagtaa
cccaggctagcttcaaacccaaggcactcctgctgcctcaacttctcaag
tgctgggattacaggcatgtgccactaagcttggcaccatcagatcttat
gtgagtagaacagatgggagccttcatgcttagggcactgaacattctac
agggggcacaggctaaaattaataactaagtatttagggctaaatagttc
ccactcatagtttatttcaataaatatcttggagcattttatttttgagg
aatattaaatctttataccttcattagaatcctcacatgaagtcagtgtt
ctcaaccctaaatgtgcacatgtcagatctgactgaagaggggtagatgg
gcgcgagtgtctacatttcttccaagatctctgggagagtgggcactcct
acccttgacttcactttcctgtaggcccggatatctggcatcctaaaagg
ctttggggatctagggccttaaaataggatgccaaggaaagaggactctg
tttcacctgtaagaagaaagagctaaaaggactaaataccaaagtgtaga
aaaaagtgtttcaaaaccagtaagcacaggatgaagcacaagctgaatac
ttatgctgactagaaaaatcctcctggagatgtccaggataccgtgctta
gg
gaattctccttcagctcttggggaaactgaggctccagtataaagtgtga
ttaggctgattttatttttgggttgttaaaaatttctctgatggggctgg
tgagatggctcagtgggtaagagcacccgactgctcttccaaaggtccgg
agttcaaatcccagcaaccacatggtggctcacaaccatccgtaacgaga
tctgactccctcttctggagtgtctgaagacagctacagtgtaattacat
ataataaataataataataataaattttctaaaaaaaaaaaatttctctg
acgtgcattgttcattgtttatctgtataaatgtctgaaaagaatcatgt
atttctgatttctgtcatttcccacagtcttaatgcagggccaacttata
aatcaaattttggaagtttgatttggaatcacatcttttcctgaagtaca
tccactcaccttgttagcaatcatctggatttctggtgtggcacggcttg
cctctgaaacacctccaagactcatcttgatgcgttgcttctttgctggc
ttggacactgagaagaaatgatcctgcaaagcactgagactcagggtttt
aaaggtatccgaaagctcctcctctagtgtcttatctccacattatctga
gggaatggggaaatgagtgtggccttaggcaagtcttactgcatccatta
caggaaatgctgagtggagttgggggtaaatgtggtgggggacatgagga
agcatgtgtgcccagacctcaggtgtggtaagcatggctcctccctgcag
tctctgtgccaataatgccatcatattgtgtcatatgagcaagggcacga
ataacctgtgtttctaaattaagttaacgcttaagaagatctttaagaaa
tacttaataatatcaggtcttgcttgccacaggatcttcccaacttttat
tagggaaaataaaactgttcatgggtgaatttttacctgcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_36157247_36158346
seq2: B6Ng01-248H07.b_45_1146

seq1  GAATTCATCATTTTGGATGGTCTCTGTGTTTCACATGTCTGATCCCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCATTTTGGATGGTCTCTGTGTTTCACATGTCTGATCCCAGAA  50

seq1  GCTGCAATTACTGATGGAATTTTCCAATCCCACTAGGTGAAACTATGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAATTACTGATGGAATTTTCCAATCCCACTAGGTGAAACTATGTGT  100

seq1  GAAGGCACTTAAGTTTATTAAGGATTCCTGAACTGATTCCAGGATGCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCACTTAAGTTTATTAAGGATTCCTGAACTGATTCCAGGATGCAAT  150

seq1  GCCCACCAAACCATCACATTCAAAACAGAACTCAATGTTTCTAGCAAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACCAAACCATCACATTCAAAACAGAACTCAATGTTTCTAGCAAGTT  200

seq1  ATTACATGTTGCTTAACTATCATCTAAATAATAAAAATGTAACATATTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATGTTGCTTAACTATCATCTAAATAATAAAAATGTAACATATTAT  250

seq1  GTTTTTTATAAAAGGGAAAAAGGCATGCAAATTATAGAGGTAGGTTTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTATAAAAGGGAAAAAGGCATGCAAATTATAGAGGTAGGTTTGCA  300

seq1  ATTTGTCACCTGATTTTCTACGATCATGTTTTCCTCTTTGAAACAAAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCACCTGATTTTCTACGATCATGTTTTCCTCTTTGAAACAAAGTC  350

seq1  ATGCTGGAGTCCAAGATTAGTTTGGCTTGTTGTCTGCTTGTTTGTTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGAGTCCAAGATTAGTTTGGCTTGTTGTCTGCTTGTTTGTTTGTT  400

seq1  TCTGCATTTGTTTCACACGTAGACTTGCTAGATGACTATCCTGCAAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATTTGTTTCACACGTAGACTTGCTAGATGACTATCCTGCAAGTAA  450

seq1  CCCAGGCTAGCTTCAAACCCAAGGCACTCCTGCTGCCTCAACTTCTCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCTAGCTTCAAACCCAAGGCACTCCTGCTGCCTCAACTTCTCAAG  500

seq1  TGCTGGGATTACAGGCATGTGCCACTAAGCTTGGCACCATCAGATCTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGATTACAGGCATGTGCCACTAAGCTTGGCACCATCAGATCTTAT  550

seq1  GTGAGTAGAACAGATGGGAGCCTTCATGCTTAGGGCACTGAACATTCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTAGAACAGATGGGAGCCTTCATGCTTAGGGCACTGAACATTCTAC  600

seq1  AGGGGGCACAGGCTAAAATTAATAACTAAGTATTTAGGGCTAAATAGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGCACAGGCTAAAATTAATAACTAAGTATTTAGGGCTAAATAGTTC  650

seq1  CCACTCATAGTTTATTTCAATAAATATCTTGGAGCATTTTATTTTTGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCATAGTTTATTTCAATAAATATCTTGGAGCATTTTATTTTTGAGG  700

seq1  AATATTAAATCTTTATACCTTCATTAGAATCCTCACATGAAGTCAGTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAAATCTTTATACCTTCATTAGAATCCTCACATGAAGTCAGTGTT  750

seq1  CTCAACCCTAAATGTGCACATGTCAGATCTGACTGAAGAGGGGTAGATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACCCTAAATGTGCACATGTCAGATCTGACTGAAGAGGGGTAGATGG  800

seq1  GCGCGAGTGTCTACATTTCTTCCAAGATCTCTGGGAGAGTGGGCACTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGAGTGTCTACATTTCTTCCAAGATCTCTGGGAGAGTGGGCACTCCT  850

seq1  ACCCTTGACTTCACTTTCCTGTAGGCCCGGATATCTGGCATCCTAAAAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTGACTTCACTTTCCTGTAGGCCCGGATATCTGGCATCCTAAAAGG  900

seq1  CTTTGGGGATCTAGGGCCTTAAAATAGGATGCCAAGG-AAGAGGACTCTG  949
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTTTGGGGATCTAGGGCCTTAAAATAGGATGCCAAGGAAAGAGGACTCTG  950

seq1  TTTCACCTGTAAGAAGAAAGAGCTAAAAGGACTAAATACCAAAGTGTAG-  998
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTCACCTGTAAGAAGAAAGAGCTAAAAGGACTAAATACCAAAGTGTAGA  1000

seq1  AAAAAGTGTTTCAAAAACCAGTAAGCACA-GATGAAGCAC-AGCTG-ATA  1045
      |||||||||||| |||||||||||||||| |||||||||| ||||| |||
seq2  AAAAAGTGTTTC-AAAACCAGTAAGCACAGGATGAAGCACAAGCTGAATA  1049

seq1  CTTATGCTGACTAAGAAAAATCCTCCT-GAGATGTTCCAGGATACCGTGC  1094
      |||||||||||| |||||||||||||| |||||| |||||||||||||||
seq2  CTTATGCTGACT-AGAAAAATCCTCCTGGAGATG-TCCAGGATACCGTGC  1097

seq1  TATAGG  1100
      | ||||
seq2  T-TAGG  1102

seq1: chr16_36276820_36277806
seq2: B6Ng01-248H07.g_61_1053 (reverse)

seq1  ACTGCAAGTAAAAA-TCA-CCATAGACAGTTTTATTATCCCTA--TAAAG  46
      |||||| ||||||| ||| ||||  ||||||||||| ||||||   ||||
seq2  ACTGCAGGTAAAAATTCACCCATGAACAGTTTTATTTTCCCTAATAAAAG  50

seq1  TTGGGAAGATCCTGT-GCAA-CCAGCCTTGATATTATTAGGTATTTTCTT  94
      ||||||||||||||| |||| | || | ||||||||||| ||||||   |
seq2  TTGGGAAGATCCTGTGGCAAGCAAGACCTGATATTATTAAGTATTT--CT  98

seq1  TAAAGATCTCTTTAAGCGTTAACTT-ATTTAGAAACACAGGTTATTCGTG  143
      |||||||||  |||||||||||||| ||||||||||||||||||||||||
seq2  TAAAGATCTTCTTAAGCGTTAACTTAATTTAGAAACACAGGTTATTCGTG  148

seq1  CCCTTGCTCATATGACACAATATGATGGCATTATTGGCACAGAGACTGCA  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGCTCATATGACACAATATGATGGCATTATTGGCACAGAGACTGCA  198

seq1  GGGAGGAGCCATGCTTACCACACCTGA-GTCTGGGCACACATGCTTCCTC  242
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGGAGGAGCCATGCTTACCACACCTGAGGTCTGGGCACACATGCTTCCTC  248

seq1  ATGTCCCCCACCACATTTACCCCCAACTCCACTCAGCATTTCCTGTAATG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCCCCACCACATTTACCCCCAACTCCACTCAGCATTTCCTGTAATG  298

seq1  GATGCAGTAAGACTTGCCTAAGGCCACACTCATTTCCCCATTCCCTCAGA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGTAAGACTTGCCTAAGGCCACACTCATTTCCCCATTCCCTCAGA  348

seq1  TAATGTGGAGATAAGACACTAGAGGAGGAGCTTTCGGATACCTTTAAAAC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGGAGATAAGACACTAGAGGAGGAGCTTTCGGATACCTTTAAAAC  398

seq1  CCTGAGTCTCAGTGCTTTGCAGGATCATTTCTTCTCAGTGTCCAAGCCAG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTCTCAGTGCTTTGCAGGATCATTTCTTCTCAGTGTCCAAGCCAG  448

seq1  CAAAGAAGCAACGCATCAAGATGAGTCTTGGAGGTGTTTCAGAGGCAAGC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAGCAACGCATCAAGATGAGTCTTGGAGGTGTTTCAGAGGCAAGC  498

seq1  CGTGCCACACCAGAAATCCAGATGATTGCTAACAAGGTGAGTGGATGTAC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCCACACCAGAAATCCAGATGATTGCTAACAAGGTGAGTGGATGTAC  548

seq1  TTCAGGAAAAGATGTGATTCCAAATCAAACTTCCAAAATTTGATTTATAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAAAAGATGTGATTCCAAATCAAACTTCCAAAATTTGATTTATAA  598

seq1  GTTGGCCCTGCATTAAGACTGTGGGAAATGACAGAAATCAGAAATACATG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCCCTGCATTAAGACTGTGGGAAATGACAGAAATCAGAAATACATG  648

seq1  ATTCTTTTCAGACATTTATACAGATAAACAATGAACAATGCACGTCAGAG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTCAGACATTTATACAGATAAACAATGAACAATGCACGTCAGAG  698

seq1  AAATTTTTTTTTTTTAGAAAATTTATTATTATTATTATTTATTATATGTA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTTTTTTTTAGAAAATTTATTATTATTATTATTTATTATATGTA  748

seq1  ATTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTCAGATCTCG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTCAGATCTCG  798

seq1  TTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCGGA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCGGA  848

seq1  CCTTTGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGC  898

seq1  CCCATCAGAGAAATTTTTAACAACCCAAAAATAAAATCAGCCTAATCACA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCAGAGAAATTTTTAACAACCCAAAAATAAAATCAGCCTAATCACA  948

seq1  CTTTATACTGGAGCCTCAGTTTCCCCAAGAGCTGAAGGAGAATTC  987
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATACTGGAGCCTCAGTTTCCCCAAGAGCTGAAGGAGAATTC  993