BAC Information

Click to search

BAC

Clone NameB6Ng01-248J17
Chromosome16 (Build37)
Map Location 66,820,998 - 66,936,419
singlet/doubletdoublet
Overlap geneCadm2
Upstream geneVgll3, LOC664846, LOC100039035
Downstream gene9330155M09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248J17.bB6Ng01-248J17.g
ACCGA056639GA056640
length5111,037
definitionB6Ng01-248J17.b B6Ng01-248J17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,935,904 - 66,936,419)(66,820,998 - 66,822,022)
sequence
acacactgaatagcaaatgtcaggttaagagtgaagcactttaaacaaac
agattaaaatattctggaaggaggtttgaaaatatttctgcatgagagtt
gtgaacaaaaatgataatttaagtcacgctatatgattttcaaaggctag
taaaaaaagtgcagagataactgaggttgcagggtgactcattaacttgc
ttcttcatctgatttcctgactcttcctagatgactaaataattagtagt
catgcattctctgctgagctctgcttcaggtgttcctagttcacttaagt
gcacaagtaactaaagaaaacaaagtctccacagtaatgagcatatattg
tacagatgctatgtgtgtgtatgtgtgtgtgtgtgagagagagtgtgtgt
actcactgagagctattaacacaaagaaataatttacagaaaggagttgg
gtcaaatctggtaatgagaagaatgatagtttgggtagaattactaaatt
caaggtattat

gaattcagcatttaaaaagaatatccctttgaaaacacaatctaggtggg
ttttttgttgttttgttttattttgattttttgtttgtttgttttttaaa
agaactcagattcttagcttaaaatatttaaatgatcccctagaaacaat
tacaggagaactaataatgtatgtttgtattaaaagaacaaaagtgagtc
ttcacagaggtgaaaaagtgagctaatatgttaagccaggcattctcagg
tcacgcctcatcaacacttaggtgcctgccacctgctccgaatgtgattt
aaatggttcggagccctgagttctggagaatttaatcttagctgcaaata
agcactgaccaatgagtaagaatctattaaatagtacttgactgtggata
aaattatttccccaatacaccattagtctaaatggttcatcaattataca
aatgcatatttagctttcatgcttggtaaaataaaattcctaagatattt
agaattctccaattttagtctccccctcccattgggtggataggtgctgg
aatatttagcaatttatatattaattagttttaaacgacatggatttaac
agtgatcctgtgaatttataatttaccatcatttaagcaagaacctggta
tgaaagctcatggaatagcacaggggtacagtacctgcttagtaagcatg
agaccctaggttgacaaaccagcactcgcactcacatttaaagaaatata
aatagaaaaatagcaaagtagaaacagctaacgatttacacacacagttt
tccctcatttaatgctgtggtcaacatcagtgaccacataccttttaaaa
actattttattttttgagaatataatatattattttccctccctttctta
gttcctccttgaaagtccttctgtggacccttttaaaatgtctttcaact
tcttgggcctcttcttttgcattaattgttgaaaatatgcaatatatcca
taatatattttacattgtacgttattacatatacata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_66935904_66936419
seq2: B6Ng01-248J17.b_47_563 (reverse)

seq1  ATAATGCCTTG-ATTTGGTAATTCTACCCAAACTATCATTCTTCTCATTA  49
      ||||| ||||| |||| |||||||||||||||||||||||||||||||||
seq2  ATAATACCTTGAATTTAGTAATTCTACCCAAACTATCATTCTTCTCATTA  50

seq1  CCAGATTTGACCCAACTCCTTTCTGTAAATTATTTCTTTGTGTTAATAGC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTTGACCCAACTCCTTTCTGTAAATTATTTCTTTGTGTTAATAGC  100

seq1  TCTCAGTGTGTACACACACTCTCTCTCACACACACACACATACACACACA  149
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTGAGTACACACACTCTCTCTCACACACACACACATACACACACA  150

seq1  TAGCATCTGTACAATATATGCTCATTACTGTGGAGACTTTGTTTTCTTTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATCTGTACAATATATGCTCATTACTGTGGAGACTTTGTTTTCTTTA  200

seq1  GTTACTTGTGCACTTAAGTGAACTAGGAACACCTGAAGCAGAGCTCAGCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTGTGCACTTAAGTGAACTAGGAACACCTGAAGCAGAGCTCAGCA  250

seq1  GAGAATGCATGACTACTAATTATTTAGTCATCTAGGAAGAGTCAGGAAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGCATGACTACTAATTATTTAGTCATCTAGGAAGAGTCAGGAAAT  300

seq1  CAGATGAAGAAGCAAGTTAATGAGTCACCCTGCAACCTCAGTTATCTCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGAAGAAGCAAGTTAATGAGTCACCCTGCAACCTCAGTTATCTCTG  350

seq1  CACTTTTTTTACTAGCCTTTGAAAATCATATAGCGTGACTTAAATTATCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTTTTACTAGCCTTTGAAAATCATATAGCGTGACTTAAATTATCA  400

seq1  TTTTTGTTCACAACTCTCATGCAGAAATATTTTCAAACCTCCTTCCAGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTCACAACTCTCATGCAGAAATATTTTCAAACCTCCTTCCAGAA  450

seq1  TATTTTAATCTGTTTGTTTAAAGTGCTTCACTCTTAACCTGACATTTGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAATCTGTTTGTTTAAAGTGCTTCACTCTTAACCTGACATTTGCT  500

seq1  ATTCAGTGTGTGAATTC  516
      |||||||||||||||||
seq2  ATTCAGTGTGTGAATTC  517


seq1: chr16_66820998_66822022
seq2: B6Ng01-248J17.g_66_1102

seq1  GAATTCAGCATTTAAAAAGAATATCCCTTTGAAAACACAATCTAGGTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATTTAAAAAGAATATCCCTTTGAAAACACAATCTAGGTGGG  50

seq1  TTTTTTGTTGTTTTGTTTTATTTTGATTTTTTGTTTGTTTGTTTTTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTGTTTTGTTTTATTTTGATTTTTTGTTTGTTTGTTTTTTAAA  100

seq1  AGAACTCAGATTCTTAGCTTAAAATATTTAAATGATCCCCTAGAAACAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCAGATTCTTAGCTTAAAATATTTAAATGATCCCCTAGAAACAAT  150

seq1  TACAGGAGAACTAATAATGTATGTTTGTATTAAAAGAACAAAAGTGAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGAGAACTAATAATGTATGTTTGTATTAAAAGAACAAAAGTGAGTC  200

seq1  TTCACAGAGGTGAAAAAGTGAGCTAATATGTTAAGCCAGGCATTCTCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGAGGTGAAAAAGTGAGCTAATATGTTAAGCCAGGCATTCTCAGG  250

seq1  TCACGCCTCATCAACACTTAGGTGCCTGCCACCTGCTCCGAATGTGATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGCCTCATCAACACTTAGGTGCCTGCCACCTGCTCCGAATGTGATTT  300

seq1  AAATGGTTCGGAGCCCTGAGTTCTGGAGAATTTAATCTTAGCTGCAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTTCGGAGCCCTGAGTTCTGGAGAATTTAATCTTAGCTGCAAATA  350

seq1  AGCACTGACCAATGAGTAAGAATCTATTAAATAGTACTTGACTGTGGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGACCAATGAGTAAGAATCTATTAAATAGTACTTGACTGTGGATA  400

seq1  AAATTATTTCCCCAATACACCATTAGTCTAAATGGTTCATCAATTATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTTCCCCAATACACCATTAGTCTAAATGGTTCATCAATTATACA  450

seq1  AATGCATATTTAGCTTTCATGCTTGGTAAAATAAAATTCCTAAGATATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATATTTAGCTTTCATGCTTGGTAAAATAAAATTCCTAAGATATTT  500

seq1  AGAATTCTCCAATTTTAGTCTCCCCCTCCCATTGGGTGGATAGGTGCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCTCCAATTTTAGTCTCCCCCTCCCATTGGGTGGATAGGTGCTGG  550

seq1  AATATTTAGCAATTTATATATTAATTAGTTTTAAACGACATGGATTTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTAGCAATTTATATATTAATTAGTTTTAAACGACATGGATTTAAC  600

seq1  AGTGATCCTGTGAATTTATAATTTACCATCATTTAAGCAAGAACCTGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCCTGTGAATTTATAATTTACCATCATTTAAGCAAGAACCTGGTA  650

seq1  TGAAAGCTCATGGAATAGCACAGGGGTACAGTACCTGCTTAGTAAGCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCTCATGGAATAGCACAGGGGTACAGTACCTGCTTAGTAAGCATG  700

seq1  AGACCCTAGGTTGACAAACCAGCACTCGCACTCACATTTAAAGAAATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTAGGTTGACAAACCAGCACTCGCACTCACATTTAAAGAAATATA  750

seq1  AATAGAAAAATAGCAAAGTAGAAACAGCTAACGATTTACACACACAGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAAAATAGCAAAGTAGAAACAGCTAACGATTTACACACACAGTTT  800

seq1  TCCCTCATTTAATGCTGTGGTCAACATCAGTGACCACATACCTTTTAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCATTTAATGCTGTGGTCAACATCAGTGACCACATACCTTTTAAAA  850

seq1  ACTA-TTTATTTTTTGAGAATATAATATATTATTTCCCCTCCCTT--CTA  897
      |||| |||||||||||||||||||||||||||||| |||||||||   ||
seq2  ACTATTTTATTTTTTGAGAATATAATATATTATTTTCCCTCCCTTTCTTA  900

seq1  GTTCCTCCTTGAAAGTCCTTCTGTGGACCCTTTTAAAATGTCTTTCAACT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCCTTGAAAGTCCTTCTGTGGACCCTTTTAAAATGTCTTTCAACT  950

seq1  TCTTGGGCCTCTTC-TTTGCATTAATTGTTG-ATATATGC-ATATATC--  992
      |||||||||||||| |||||||||||||||| | |||||| |||||||  
seq2  TCTTGGGCCTCTTCTTTTGCATTAATTGTTGAAAATATGCAATATATCCA  1000

seq1  --ATATATATTTACA-TGTACGT--ATACATATACATA  1025
        |||||| |||||| |||||||   ||||||||||||
seq2  TAATATAT-TTTACATTGTACGTTATTACATATACATA  1037


| Home | SequenceCutter | Blast | Download |