BAC Information

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BAC

Clone NameB6Ng01-249L02
Chromosome16 (Build37)
Map Location 35,384,802 - 35,491,243
singlet/doubletdoublet
Overlap genePdia5
Upstream geneKalrn, Ropn1, Ccdc14, Mylk, Ptplb, Adcy5, Sec22a
Downstream geneSema5b, EG546663, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249L02.bB6Ng01-249L02.g
ACCGA057443GA057444
length1,205946
definitionB6Ng01-249L02.b B6Ng01-249L02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,384,802 - 35,386,002)(35,490,301 - 35,491,243)
sequence
gaattcttcaaacacacttgccagtaatcttcctttttatttttttttgc
ctttaaagatataatttgaaaattttaatcattggatgtgtgcctatgtg
tgggtattcacatgtgtgttgcgatgcctctgtgacgcgatgtgtgttgt
gatttataagggtgtgttataacatctagtcacccatcctttttcttttt
tcttacagttgggtcaaaatataggtgttgttaaaaagaaaaaaaaatcg
ctgtagtcaaataattcccatgctgtataacttacccatttaaaacatat
aaattccgtgatttttaaatacctctgcggagttttataaccaatactgt
agtcaagttttagaatacaattcttggagggtaggtcagtgatagagcgt
gtgtttagcatgcataaggcactgggttcaagctgggcatagtgttgtat
gccttaatcccagcaccccaccggtagagcaggtgaatctctgtgagttc
aagactaccctgaactacacaatgagttccaggatggccagatctacata
gaaatcaatcaatcaatcaatcaatcaatctacatagaaatcaatcaatc
aatcaatcaatcaatcaaccaaccaagcaagcaaacaagcatgcatgcat
tcaagcaagcaagcaagcaagcaagcaagcaagcaaatgacacttggttc
aatgccaggtcctacccacaaataaaaaccaacaaaattttccaaataat
ttgaggttattttcattattgtccccaaacagcctcatgaccatgcctta
gcccctgccttctggttgcaggtaaccccacctatgttctgtctctatag
acttttttcatgttctaaacatctcacatagacaactcatgcaaaatgtg
gtatttgtgaccagtttcataaactcagcatgctcttgaagttcatccac
tttgtagcgtgtataaagactccaatccacacaatttccccttatatgga
tagaacatcttgtcagcctctctctgtgacagacactggagtgtttttct
gcttgagccgagtgtgtaaaatgctgtgaccatttgtgtatacattttgg
tggtgacatattgcccttccaatctcccagaaacgcaatgggtgaaccct
aatccatattggttgcctttacttttgaagaaccctctaggccctgtctt
ccaag
gaattctctgggttgcctgctaatcctcggggtggggaaactaacttctg
ggggcagagtgagttgttggttctgattctgcgggcacagagcaaggctc
cttagtgaacaactgtccctactccccagcctccctgccccccatcctca
cagctgctactctgcgtcctcaggcaaagtccgaggcagaggcatcccga
gcttctcgtgaactacaactcccggcaggctccttcccgggccgcctctc
ctagcctggtgcgcatgctttggcagacgtggcaccgggaactcggaggc
ggggagcggctgtgaagtggccgtagctgttggccgaggtggagctggca
ggcgtgcgcgggagccgggtgcagacggcaggaggcggcggggatggcgc
gggcgtgggggctgctactggcgattggggtgaggctgtgggccggcgac
acgtgcgtcccgcatggccgtgggagcgcgcggtccgggttggttggggg
cgtgctcgccgggtggcaatagggtctttggtcctctgctctccactggg
gccgggccgggtgatccctctctccgggttcgcgctcccgcacaactttg
cggggacgcaggtctgggatgtccttagcctaagcaggactccccgggcg
gtgcttgcacctgtgtgagtgtggggtggaggctgccttccacttgcgca
gcaggaacacttgctcgtgggttggacccccggagaaagggcgcgtgacg
ggttgggtggggtcaccacctccaagagttctgctcccacggtgatgccg
gctccagccccggccactttcgagctgtgtgtgtggcgccctgggatctg
taaacgtgtctgcgttccttctatgagaatgggaaaccgtaaagatactc
ggctaaggaggttgtcatacgggttggctgaggagtcggtggaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_35384802_35386002
seq2: B6Ng01-249L02.b_43_1247

seq1  GAATTCTTCAAACACACTTGCCAGTAATCTTCCTTTTTATTTTTTTTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAAACACACTTGCCAGTAATCTTCCTTTTTATTTTTTTTTGC  50

seq1  CTTTAAAGATATAATTTGAAAATTTTAATCATTGGATGTGTGCCTATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAGATATAATTTGAAAATTTTAATCATTGGATGTGTGCCTATGTG  100

seq1  TGGGTATTCACATGTGTGTTGCGATGCCTCTGTGACGCGATGTGTGTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTATTCACATGTGTGTTGCGATGCCTCTGTGACGCGATGTGTGTTGT  150

seq1  GATTTATAAGGGTGTGTTATAACATCTAGTCACCCATCCTTTTTCTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATAAGGGTGTGTTATAACATCTAGTCACCCATCCTTTTTCTTTTT  200

seq1  TCTTACAGTTGGGTCAAAATATAGGTGTTGTTAAAAAGAAAAAAAAATCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACAGTTGGGTCAAAATATAGGTGTTGTTAAAAAGAAAAAAAAATCG  250

seq1  CTGTAGTCAAATAATTCCCATGCTGTATAACTTACCCATTTAAAACATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTCAAATAATTCCCATGCTGTATAACTTACCCATTTAAAACATAT  300

seq1  AAATTCCGTGATTTTTAAATACCTCTGCGGAGTTTTATAACCAATACTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCGTGATTTTTAAATACCTCTGCGGAGTTTTATAACCAATACTGT  350

seq1  AGTCAAGTTTTAGAATACAATTCTTGGAGGGTAGGTCAGTGATAGAGCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGTTTTAGAATACAATTCTTGGAGGGTAGGTCAGTGATAGAGCGT  400

seq1  GTGTTTAGCATGCATAAGGCACTGGGTTCAAGCTGGGCATAGTGTTGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTAGCATGCATAAGGCACTGGGTTCAAGCTGGGCATAGTGTTGTAT  450

seq1  GCCTTAATCCCAGCACCCCACCGGTAGAGCAGGTGAATCTCTGTGAGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAATCCCAGCACCCCACCGGTAGAGCAGGTGAATCTCTGTGAGTTC  500

seq1  AAGACTACCCTGAACTACACAATGAGTTCCAGGATGGCCAGATCTACATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTACCCTGAACTACACAATGAGTTCCAGGATGGCCAGATCTACATA  550

seq1  GAAATCAATCAATCAATCAATCAATCAATCTACATAGAAATCAATCAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAATCAATCAATCAATCAATCAATCTACATAGAAATCAATCAATC  600

seq1  AATCAATCAATCAATCAACCAACCAAGCAAGCAAACAAGCATGCATGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATCAATCAATCAACCAACCAAGCAAGCAAACAAGCATGCATGCAT  650

seq1  TCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAATGACACTTGGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAATGACACTTGGTTC  700

seq1  AATGCCAGGTCCTACCCACAAATAAAAACCAACAAAATTTTCCAAATAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCAGGTCCTACCCACAAATAAAAACCAACAAAATTTTCCAAATAAT  750

seq1  TTGAGGTTATTTTCATTATTGTCCCCAAACAGCCTCATGACCATGCCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTTATTTTCATTATTGTCCCCAAACAGCCTCATGACCATGCCTTA  800

seq1  GCCCCTGCCTTCTGGTTGCAGGTAACCCCACCTATGTTCTGTCTCTATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGCCTTCTGGTTGCAGGTAACCCCACCTATGTTCTGTCTCTATAG  850

seq1  ACTTTTTTCATGTTCTAAACATCTCACATAGACAACTCATGCAAAATGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTCATGTTCTAAACATCTCACATAGACAACTCATGCAAAATGTG  900

seq1  GTATTTGTGACCAGTTTCATAAACTCAGCATGCTCTTGAAGTTCATCCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGTGACCAGTTTCATAAACTCAGCATGCTCTTGAAGTTCATCCAC  950

seq1  TTTGTAGCGTGTATAAAGACTCCAATCCACACAATTTCCCCTTATATGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGCGTGTATAAAGACTCCAATCCACACAATTTCCCCTTATATGGA  1000

seq1  TAGAACATCTTGTCAGCCTCTCTTCTGTTGACAGACACTGGAGTG-TTTT  1049
      |||||||||||||||||||||| |||| ||||||||||||||||| ||||
seq2  TAGAACATCTTGTCAGCCTCTC-TCTG-TGACAGACACTGGAGTGTTTTT  1048

seq1  CTGCTTTGAGGCCGAGTGTGTAAAAATGCTGTGACCATTTGTGTATACAT  1099
      |||| |||| ||||||||||| ||||||||||||||||||||||||||||
seq2  CTGC-TTGA-GCCGAGTGTGT-AAAATGCTGTGACCATTTGTGTATACAT  1095

seq1  TTTGGTGTGGACATA-TGCTCT--CATTCTCCCAGAAACGCA--TGGTG-  1143
      |||||||  |||||| ||| ||  || |||||||||||||||   |||| 
seq2  TTTGGTGGTGACATATTGCCCTTCCAATCTCCCAGAAACGCAATGGGTGA  1145

seq1  ACTCATATCATAATTGTGTGCTTTAACTTTTTGAAGAA-CCTCTAGG--C  1190
      || |  |||   ||||  ||| || || |||||||||| ||||||||  |
seq2  ACCCTAATCCATATTGGTTGCCTTTAC-TTTTGAAGAACCCTCTAGGCCC  1194

seq1  TGTCTTCCAAG  1201
      |||||||||||
seq2  TGTCTTCCAAG  1205

seq1: chr16_35490301_35491243
seq2: B6Ng01-249L02.g_66_1011 (reverse)

seq1  GGTTCCACCGACTCCTCAGCCGACCCGTCTGACAACCTCCTTAG-CGGGT  49
      ||||||||||||||||||||| |||||| ||||||||||||||| || ||
seq2  GGTTCCACCGACTCCTCAGCCAACCCGTATGACAACCTCCTTAGCCGAGT  50

seq1  ATCTTTACGGTTTCCCA-TCTCATAGAAGGAACGCAGACACGTTTACAGA  98
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATCTTTACGGTTTCCCATTCTCATAGAAGGAACGCAGACACGTTTACAGA  100

seq1  T-CCAGGGCGCCACACACACAGCTCGAAAGTGGCCGGGGCTGGAGCCGGC  147
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGGCGCCACACACACAGCTCGAAAGTGGCCGGGGCTGGAGCCGGC  150

seq1  ATCACCGTGGGAGCAGAACTCTTGGAGGTGGTGACCCCACCCAACCCGTC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCGTGGGAGCAGAACTCTTGGAGGTGGTGACCCCACCCAACCCGTC  200

seq1  ACGCGCCCTTTCTCCGGGGGTCCAACCCACGAGCAAGTGTTCCTGCTGCG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCGCCCTTTCTCCGGGGGTCCAACCCACGAGCAAGTGTTCCTGCTGCG  250

seq1  CAAGTGGAAGGCAGCCTCCACCCCACACTCACACAGGTGCAAGCACCGCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGAAGGCAGCCTCCACCCCACACTCACACAGGTGCAAGCACCGCC  300

seq1  CGGGGAGTCCTGCTTAGGCTAAGGACATCCCAGACCTGCGTCCCCGCAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGAGTCCTGCTTAGGCTAAGGACATCCCAGACCTGCGTCCCCGCAAA  350

seq1  GTTGTGCGGGAGCGCGAACCCGGAGAGAGGGATCACCCGGCCCGGCCCCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGCGGGAGCGCGAACCCGGAGAGAGGGATCACCCGGCCCGGCCCCA  400

seq1  GTGGAGAGCAGAGGACCAAAGACCCTATTGCCACCCGGCGAGCACGCCCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGAGCAGAGGACCAAAGACCCTATTGCCACCCGGCGAGCACGCCCC  450

seq1  CAACCAACCCGGACCGCGCGCTCCCACGGCCATGCGGGACGCACGTGTCG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAACCCGGACCGCGCGCTCCCACGGCCATGCGGGACGCACGTGTCG  500

seq1  CCGGCCCACAGCCTCACCCCAATCGCCAGTAGCAGCCCCCACGCCCGCGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCCCACAGCCTCACCCCAATCGCCAGTAGCAGCCCCCACGCCCGCGC  550

seq1  CATCCCCGCCGCCTCCTGCCGTCTGCACCCGGCTCCCGCGCACGCCTGCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCGCCGCCTCCTGCCGTCTGCACCCGGCTCCCGCGCACGCCTGCC  600

seq1  AGCTCCACCTCGGCCAACAGCTACGGCCACTTCACAGCCGCTCCCCGCCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCACCTCGGCCAACAGCTACGGCCACTTCACAGCCGCTCCCCGCCT  650

seq1  CCGAGTTCCCGGTGCCACGTCTGCCAAAGCATGCGCACCAGGCTAGGAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTTCCCGGTGCCACGTCTGCCAAAGCATGCGCACCAGGCTAGGAGA  700

seq1  GGCGGCCCGGGAAGGAGCCTGCCGGGAGTTGTAGTTCACGAGAAGCTCGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGCCCGGGAAGGAGCCTGCCGGGAGTTGTAGTTCACGAGAAGCTCGG  750

seq1  GATGCCTCTGCCTCGGACTTTGCCTGAGGACGCAGAGTAGCAGCTGTGAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCTCTGCCTCGGACTTTGCCTGAGGACGCAGAGTAGCAGCTGTGAG  800

seq1  GATGGGGGGCAGGGAGGCTGGGGAGTAGGGACAGTTGTTCACTAAGGAGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGGGGCAGGGAGGCTGGGGAGTAGGGACAGTTGTTCACTAAGGAGC  850

seq1  CTTGCTCTGTGCCCGCAGAATCAGAACCAACAACTCACTCTGCCCCCAGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCTGTGCCCGCAGAATCAGAACCAACAACTCACTCTGCCCCCAGA  900

seq1  AGTTAGTTTCCCCACCCCGAGGATTAGCAGGCAACCCAGAGAATTC  943
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGTTTCCCCACCCCGAGGATTAGCAGGCAACCCAGAGAATTC  946