BAC Information

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BAC

Clone NameB6Ng01-249L20
Chromosome16 (Build37)
Map Location 9,208,021 - 9,351,497
singlet/doubletdoublet
Overlap genenone
Upstream gene4930511J11Rik, BC024814, Abat, LOC665207, Tmem186, Pmm2, Carhsp1, EG436336, Usp7, LOC665231, 1810013L24Rik, LOC100043106
Downstream geneGrin2a, LOC665291, LOC100042534, 4930517K11Rik, Atf7ip2, Emp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249L20.bB6Ng01-249L20.g
ACCGA057479GA057480
length1,084974
definitionB6Ng01-249L20.b B6Ng01-249L20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,350,421 - 9,351,497)(9,208,021 - 9,208,994)
sequence
gaattctaaacccttgatcttggtcaaggatgcccttggactgttggaac
actggcggaaggcttaagccatgtcaaaattcaattttaaaaagcactta
taataggaaaatactgaaagagagcacgtggatccatacactagactaac
tcgggaatggaactcgggaatgaaaaattactgtatgggtagggaacgct
agactccaggaggagagcttccttgaaactcttttgcctcatgagtgact
tttaagcctttcggcttgtccagttgactcgaccggagagcgtagcagat
aaatagatagatagatagatagatagatagatagatagatagatagattc
aaaagatagaaaaatcagacagtgcaaatatgaggttccctcttatcaaa
gactcctttttgcaagagttaaaaaatatggagcagcaagacaactcaaa
ggtgcttaccacacaggccttataacttgagtctaatccctggaatccat
gtaaaaaagtctggatgtggtggcgtgcacctttaatatttgcactccta
cactgaactggaagaatatactagaagctcctgtcttgtagagtatgagg
tacaagatgttctccaactgtccagtgcctgacaagtggtaataactgtt
ctttatgctggttttcataccacatgatcttcctatgttggtaagaacat
ctctgtcctgaagtgcaattaacagaagcttccagacttgtttgcagaaa
tgagctaatgagaggaattctgtaacacacacacacacacactgaagact
ggcctaagtgcagatacttcccttgacttctcctgaccttttctatctaa
ccttggaaacagggcagagtgtgaaatctgtgcccgagtcagtgggcagg
aagagctttcatgggggttattctccaatgtcaggtgctgagggcataga
gcaagtctggaattccgctttccctgataagaaaatgattagcgcttgca
ctgtgcataaattagtggttgggagctagacgggccacgcaaggaggaaa
ggatacagcctcatttgttggatgttcggtggga

gaattcctctttactcaaatgaatctttcctagtaccaaagccccagcta
ataatgtacattcttctggatccctctagctactcctcaagggttataca
gcccttgtcactccgaaataaagcgaactgctgtttcacaaaatatcatc
tcagagacctatttcactgaatatcacctagaagagcttcttctctggcc
ctcctccacaaaaaaagggagctgtaacactgcaagccatcaagaaggag
gccaggccgaggtccagcaaacccacgtccagtcaagttttgtcctttca
tttcagctacttcacaataccagctgaatacactgagggcagaagcagag
ccaggccacacccctgggttggctttctcctcttcccatattttttctca
cttcctctctggcacaagctgggatcttcccaagaaagactttgtgtaca
ggttctgtctcaggctgcattgttcattttaggtgatgggttacttacat
atcacggtgataaagtactaacagaaacaacatagggcaggaaggattta
ttttctcatggatttaatccattatcatgaggaggctgtggaggaatact
gcagttctttgcatggaaggaaggcttctgcctaatgatattcaggcacc
attgcacgggggccagaatgaaaagaacagagcttgacatggcagtggat
ttgctggaccttggtctgtccttctccaagatggttttcagtgttccagc
tcccttgggggtggtggtgaaaaaattcttatagatgatattcagtaaaa
tagctctcttagatgatatttcataaaatcgcacctctcttttttcatga
gtcacatagcctatataaaccccggggagtggtagaggtttcacgagagc
tttacattacttctacacacttgcttgtctcagagtcttgaagcacccat
tgacgtttcttgtatgtgagactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_9350421_9351497
seq2: B6Ng01-249L20.b_51_1134 (reverse)

seq1  TCCCACCCGAACATCCAACAAATGAGCTTGTAT-CTGTCCT-CTTGCGTG  48
      ||||| ||||||||||||||||||||  ||||| || |||| ||||||||
seq2  TCCCA-CCGAACATCCAACAAATGAGGCTGTATCCTTTCCTCCTTGCGTG  49

seq1  GCCCGTCTAGCTCC--AACACT-ATTTATGCACAGTGCAAGCGCTAATCA  95
      ||||||||||||||  | |||| |||||||||||||||||||||||||||
seq2  GCCCGTCTAGCTCCCAACCACTAATTTATGCACAGTGCAAGCGCTAATCA  99

seq1  TTTTCTTATCAGGGAAAGCGG-ATTCCAGACTTGCTCTATGCCCTCAGCA  144
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTTTCTTATCAGGGAAAGCGGAATTCCAGACTTGCTCTATGCCCTCAGCA  149

seq1  CCTGACATTGGAG-ATAA-CCCCATGGAAGCTCTTCCTGCCCACCTGACT  192
      ||||||||||||| |||| ||||||| |||||||||||||||| ||||||
seq2  CCTGACATTGGAGAATAACCCCCATGAAAGCTCTTCCTGCCCA-CTGACT  198

seq1  CGGGCACAGA-TTCACACTCTGCCCTGTTTCCAAGGTTAGATAGAAAAGG  241
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CGGGCACAGATTTCACACTCTGCCCTGTTTCCAAGGTTAGATAGAAAAGG  248

seq1  TCAGGAGAAGTCAAGGGAAGTATCTGCACTTAGGCCAGTCTTCAGTGTGT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGAAGTCAAGGGAAGTATCTGCACTTAGGCCAGTCTTCAGTGTGT  298

seq1  GTGTGTGTGTGTTACAGAATTCCTCTCATTAGCTCATTTCTGCAAACAAG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTTACAGAATTCCTCTCATTAGCTCATTTCTGCAAACAAG  348

seq1  TCTGGAAGCTTCTGTTAATTGCACTTCAGGACAGAGATGTTCTTACCAAC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAGCTTCTGTTAATTGCACTTCAGGACAGAGATGTTCTTACCAAC  398

seq1  ATAGGAAGATCATGTGGTATGAAAACCAGCATAAAGAACAGTTATTACCA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAGATCATGTGGTATGAAAACCAGCATAAAGAACAGTTATTACCA  448

seq1  CTTGTCAGGCACTGGACAGTTGGAGAACATCTTGTACCTCATACTCTACA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCAGGCACTGGACAGTTGGAGAACATCTTGTACCTCATACTCTACA  498

seq1  AGACAGGAGCTTCTAGTATATTCTTCCAGTTCAGTGTAGGAGTGCAAATA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGAGCTTCTAGTATATTCTTCCAGTTCAGTGTAGGAGTGCAAATA  548

seq1  TTAAAGGTGCACGCCACCACATCCAGACTTTTTTACATGGATTCCAGGGA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGTGCACGCCACCACATCCAGACTTTTTTACATGGATTCCAGGGA  598

seq1  TTAGACTCAAGTTATAAGGCCTGTGTGGTAAGCACCTTTGAGTTGTCTTG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACTCAAGTTATAAGGCCTGTGTGGTAAGCACCTTTGAGTTGTCTTG  648

seq1  CTGCTCCATATTTTTTAACTCTTGCAAAAAGGAGTCTTTGATAAGAGGGA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCATATTTTTTAACTCTTGCAAAAAGGAGTCTTTGATAAGAGGGA  698

seq1  ACCTCATATTTGCACTGTCTGATTTTTCTATCTTTTGAATCTATCTATCT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATATTTGCACTGTCTGATTTTTCTATCTTTTGAATCTATCTATCT  748

seq1  ATCTATCTATCTATCTATCTATCTATCTATCTATTTATCTGCTACGCTCT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCTATCTATCTATCTATCTATCTATCTATTTATCTGCTACGCTCT  798

seq1  CCGGTCGAGTCAACTGGACAAGCCGAAAGGCTTAAAAGTCACTCATGAGG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTCGAGTCAACTGGACAAGCCGAAAGGCTTAAAAGTCACTCATGAGG  848

seq1  CAAAAGAGTTTCAAGGAAGCTCTCCTCCTGGAGTCTAGCGTTCCCTACCC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAGTTTCAAGGAAGCTCTCCTCCTGGAGTCTAGCGTTCCCTACCC  898

seq1  ATACAGTAATTTTTCATTCCCGAGTTCCATTCCCGAGTTAGTCTAGTGTA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTAATTTTTCATTCCCGAGTTCCATTCCCGAGTTAGTCTAGTGTA  948

seq1  TGGATCCACGTGCTCTCTTTCAGTATTTTCCTATTATAAGTGCTTTTTAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCACGTGCTCTCTTTCAGTATTTTCCTATTATAAGTGCTTTTTAA  998

seq1  AATTGAATTTTGACATGGCTTAAGCCTTCCGCCAGTGTTCCAACAGTCCA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAATTTTGACATGGCTTAAGCCTTCCGCCAGTGTTCCAACAGTCCA  1048

seq1  AGGGCATCCTTGACCAAGATCAAGGGTTTAGAATTC  1077
      ||||||||||||||||||||||||||||||||||||
seq2  AGGGCATCCTTGACCAAGATCAAGGGTTTAGAATTC  1084


seq1: chr16_9208021_9208994
seq2: B6Ng01-249L20.g_67_1040

seq1  GAATTCCTCTTTACTCAAATGAATCTTTCCTAGTACCAAAGCCCCAGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTTACTCAAATGAATCTTTCCTAGTACCAAAGCCCCAGCTA  50

seq1  ATAATGTACATTCTTCTGGATCCCTCTAGCTACTCCTCAAGGGTTATACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTACATTCTTCTGGATCCCTCTAGCTACTCCTCAAGGGTTATACA  100

seq1  GCCCTTGTCACTCCGAAATAAAGCGAACTGCTGTTTCACAAAATATCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGTCACTCCGAAATAAAGCGAACTGCTGTTTCACAAAATATCATC  150

seq1  TCAGAGACCTATTTCACTGAATATCACCTAGAAGAGCTTCTTCTCTGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGACCTATTTCACTGAATATCACCTAGAAGAGCTTCTTCTCTGGCC  200

seq1  CTCCTCCACAAAAAAAGGGAGCTGTAACACTGCAAGCCATCAAGAAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCACAAAAAAAGGGAGCTGTAACACTGCAAGCCATCAAGAAGGAG  250

seq1  GCCAGGCCGAGGTCCAGCAAACCCACGTCCAGTCAAGTTTTGTCCTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCCGAGGTCCAGCAAACCCACGTCCAGTCAAGTTTTGTCCTTTCA  300

seq1  TTTCAGCTACTTCACAATACCAGCTGAATACACTGAGGGCAGAAGCAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCTACTTCACAATACCAGCTGAATACACTGAGGGCAGAAGCAGAG  350

seq1  CCAGGCCACACCCCTGGGTTGGCTTTCTCCTCTTCCCATATTTTTTCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCACACCCCTGGGTTGGCTTTCTCCTCTTCCCATATTTTTTCTCA  400

seq1  CTTCCTCTCTGGCACAAGCTGGGATCTTCCCAAGAAAGACTTTGTGTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTCTGGCACAAGCTGGGATCTTCCCAAGAAAGACTTTGTGTACA  450

seq1  GGTTCTGTCTCAGGCTGCATTGTTCATTTTAGGTGATGGGTTACTTACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGTCTCAGGCTGCATTGTTCATTTTAGGTGATGGGTTACTTACAT  500

seq1  ATCACGGTGATAAAGTACTAACAGAAACAACATAGGGCAGGAAGGATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACGGTGATAAAGTACTAACAGAAACAACATAGGGCAGGAAGGATTTA  550

seq1  TTTTCTCATGGATTTAATCCATTATCATGAGGAGGCTGTGGAGGAATACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCATGGATTTAATCCATTATCATGAGGAGGCTGTGGAGGAATACT  600

seq1  GCAGTTCTTTGCATGGAAGGAAGGCTTCTGCCTAATGATATTCAGGCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCTTTGCATGGAAGGAAGGCTTCTGCCTAATGATATTCAGGCACC  650

seq1  ATTGCACGGGGGCCAGAATGAAAAGAACAGAGCTTGACATGGCAGTGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCACGGGGGCCAGAATGAAAAGAACAGAGCTTGACATGGCAGTGGAT  700

seq1  TTGCTGGACCTTGGTCTGTCCTTCTCCAAGATGGTTTTCAGTGTTCCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGACCTTGGTCTGTCCTTCTCCAAGATGGTTTTCAGTGTTCCAGC  750

seq1  TCCCTTGGGGGTGGTGGTGAAAAAATTCTTATAGATGATATTCAGTAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGGGGGTGGTGGTGAAAAAATTCTTATAGATGATATTCAGTAAAA  800

seq1  TAGCTCTCTTAGATGATATTTCATAAAATCGCACCTCTCTTTTTTCATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTCTTAGATGATATTTCATAAAATCGCACCTCTCTTTTTTCATGA  850

seq1  GTCACATAGCCTATATAAACCCCGGGGAGTGGGTAGAGGTTTTCAAGAGA  900
      |||||||||||||||||||||||||||||| |||||||| ||||| ||||
seq2  GTCACATAGCCTATATAAACCCCGGGGAGT-GGTAGAGG-TTTCACGAGA  898

seq1  G-TATACATTACTTCACAACACTTGCTTGCCTCAGAGTC-TGAAGCCACC  948
      | | |||||||||||   ||||||||||| ||||||||| ||||| ||||
seq2  GCTTTACATTACTTCTACACACTTGCTTGTCTCAGAGTCTTGAAG-CACC  947

seq1  CATTGACGTTCTTGGTGTG-GAGACTC  974
      ||||||||||  | || || |||||||
seq2  CATTGACGTTTCTTGTATGTGAGACTC  974


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