BAC Information

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BAC

Clone NameB6Ng01-250A15
Chromosome16 (Build37)
Map Location 41,497,572 - 41,625,409
singlet/doubletdoublet
Overlap geneLsamp
Upstream geneEG667450
Downstream geneGap43
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250A15.bB6Ng01-250A15.g
ACCGA057697GA057698
length1,2201,101
definitionB6Ng01-250A15.b B6Ng01-250A15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,497,572 - 41,498,819)(41,624,298 - 41,625,409)
sequence
gaattccaaggaagaactgagaaaggttgtgaggaggaggctttgtgatt
aacccggaggtcacattctgaagtctctttgtcttccaaacttcaaaact
tgtctcgatttaccttatataaggctttgaaacagtgtcatagcctggaa
aacacagtccctcatttgttgagatatgtgcagctcctacataaggtccc
acaaaggatgagggacactaggttgatggccataaagtattgacaagaaa
caagctaatttaggaaaagcatttcttaactccttgaaatggtatccatg
gctaattggtcactttccatgaagactcattcgacttcaactctatggaa
gaaacgtactcgatcgtactgaggcctgctgtatattcccctttatgtct
tcattgatgtgcttacaagagtgagttgcttgaagtcagttcatgatgaa
gttcctgtccattcattcatggagtacgagtcttgctgtgacatgctcta
aatccagcagaggatactagtactatcttgatgagtttctctaccacttg
ggatatctgtcagtttctaaatctggtagtttctgaacaaccccaaactt
ggaaagacacatcaaaaaaaaataataataaccttttttttttaatctgg
gcatttcgaacaggtcaatgatgcctttctcaagagatgaatttattatt
ttactgaaaattaatgcaattgccttaaattaatgaagtgtccctctatt
tgaagaagcacaaaagggaatagccctttataaaagctttatttttaagc
gtgtgttcttttatcagcctatgggcaaataataattgtttaaggataga
aaagcagaaaatgttgtaggaacagagtgctctctctgtggggctgaact
tcagatttcggggagagaaatgacctagaatcccaaaagttgaaacgttc
ccaggaggaaccaacacttagggatttcttttcctgatgtgcacggcttc
tcatccctgagacatgctcggcctatgtggaaatatgtaagtcatgtgga
gagcatgaagaatggatctgtccttcattcatgttccctcgtgctttatt
tcacttccagaaatgaggaacagaacttataaagaaccaaaggctagtag
cttgattcttgtcagggtcctcgcctaatcaccttatgttgtatgagcct
ggacattgaaagaagtcaaa

gaattcagaatgatagtgatcagccatagtttgacctctggttaatcaga
gtgttatacctaagctaaaatatagggatcactcgacagctgcatctgca
ggcaaaccaagaggaaatgagggttaataacgctgcatgcctacgaatgt
tattaagcgatgaaaagggttcagtgacctaactgagaaaattcagacaa
agataaattatattcatctactcttccagtaaattattcaaaaatgatca
attaactctggctagttctatgaacaggagtcatcatttgaaatatataa
ttatgatacttgacaatatttaattgagcgtcgttccttggtatcattac
ttaattgcttcatgtgaggaagtttgattccttagcgggctctcctatcc
ttgaagacagttctcacctaacagattccatcagaaatccccactgattc
cactctatgcaagggacacattaattgaattgttacaaacaaatctttaa
aaataaactggaatcagaggtagcgatgcagaaggtgtaggaaggagtca
aagtgttggagtgtggctatagggatatcgtgtaagttgtcatgtaatcc
ttttacattcaactatacagcgaccacaggccctccctttatacatttgc
acttattatcttattcataaaaacacaaaaattatatatcagttgatcca
cttcaaaacataatcaatagaatgtattacattaatgactcagttaaggg
aatattcaggaaaaatgttgtggggcttctaagatttctcaactccatgc
tcattagttattttaaaacttttattgtttaagctgagaccgagaaagaa
tggtcaggattcaagagaccctccatagcacttcacactactgaagcttc
aactatttactgccagagtttttctttagcctaagccagaatgtattttg
agagatggaggttcctgaagtaattgtcctgccttcatctgatcctgatt
ttaactaatgtctgtctcttcgtgtcccaggatacagcctgatcttttca
gatgcatcatcattgaataaagttcaagcagacatttcaaagttcctcag
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_41497572_41498819
seq2: B6Ng01-250A15.b_48_1267

seq1  GAATTCCAAGGAAGAACTGAGAAAGGTTGTGAGGAGGAGGCTTTGTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGAAGAACTGAGAAAGGTTGTGAGGAGGAGGCTTTGTGATT  50

seq1  AACCCGGAGGTCACATTCTGAAGTCTCTTTGTCTTCCAAACTTCAAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCGGAGGTCACATTCTGAAGTCTCTTTGTCTTCCAAACTTCAAAACT  100

seq1  TGTCTCGATTTACCTTATATAAGGCTTTGAAACAGTGTCATAGCCTGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCGATTTACCTTATATAAGGCTTTGAAACAGTGTCATAGCCTGGAA  150

seq1  AACACAGTCCCTCATTTGTTGAGATATGTGCAGCTCCTACATAAGGTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGTCCCTCATTTGTTGAGATATGTGCAGCTCCTACATAAGGTCCC  200

seq1  ACAAAGGATGAGGGACACTAGGTTGATGGCCATAAAGTATTGACAAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGATGAGGGACACTAGGTTGATGGCCATAAAGTATTGACAAGAAA  250

seq1  CAAGCTAATTTAGGAAAAGCATTTCTTAACTCCTTGAAATGGTATCCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTAATTTAGGAAAAGCATTTCTTAACTCCTTGAAATGGTATCCATG  300

seq1  GCTAATTGGTCACTTTCCATGAAGACTCATTCGACTTCAACTCTATGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATTGGTCACTTTCCATGAAGACTCATTCGACTTCAACTCTATGGAA  350

seq1  GAAACGTACTCGATCGTACTGAGGCCTGCTGTATATTCCCCTTTATGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACGTACTCGATCGTACTGAGGCCTGCTGTATATTCCCCTTTATGTCT  400

seq1  TCATTGATGTGCTTACAAGAGTGAGTTGCTTGAAGTCAGTTCATGATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGATGTGCTTACAAGAGTGAGTTGCTTGAAGTCAGTTCATGATGAA  450

seq1  GTTCCTGTCCATTCATTCATGGAGTACGAGTCTTGCTGTGACATGCTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGTCCATTCATTCATGGAGTACGAGTCTTGCTGTGACATGCTCTA  500

seq1  AATCCAGCAGAGGATACTAGTACTATCTTGATGAGTTTCTCTACCACTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGCAGAGGATACTAGTACTATCTTGATGAGTTTCTCTACCACTTG  550

seq1  GGATATCTGTCAGTTTCTAAATCTGGTAGTTTCTGAACAACCCCAAACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATCTGTCAGTTTCTAAATCTGGTAGTTTCTGAACAACCCCAAACTT  600

seq1  GGAAAGACACATCAAAAAAAAATAATAATAACCTTTTTTTTTTAATCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGACACATCAAAAAAAAATAATAATAACCTTTTTTTTTTAATCTGG  650

seq1  GCATTTCGAACAGGTCAATGATGCCTTTCTCAAGAGATGAATTTATTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCGAACAGGTCAATGATGCCTTTCTCAAGAGATGAATTTATTATT  700

seq1  TTACTGAAAATTAATGCAATTGCCTTAAATTAATGAAGTGTCCCTCTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGAAAATTAATGCAATTGCCTTAAATTAATGAAGTGTCCCTCTATT  750

seq1  TGAAGAAGCACAAAAGGGAATAGCCCTTTATAAAAGCTTTATTTTTAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAGCACAAAAGGGAATAGCCCTTTATAAAAGCTTTATTTTTAAGC  800

seq1  GTGTGTTCTTTTATCAGCCTATGGGCAAATAATAATTGTTTAAGGATAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTCTTTTATCAGCCTATGGGCAAATAATAATTGTTTAAGGATAGA  850

seq1  AAAGCAGAAAATGTTGTAGGAACAGAGTGCTCTCTCTGTGGGGCTGAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGAAAATGTTGTAGGAACAGAGTGCTCTCTCTGTGGGGCTGAACT  900

seq1  TCAGATTTCGGGGAGAGAAATGACCTAGAATCCCAAAAAGTTGAAACGTT  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCAGATTTCGGGGAGAGAAATGACCTAGAATCCC-AAAAGTTGAAACGTT  949

seq1  CCCAGGAGGAACCAACCACTTAGGGATTTCTTTTCCTGATGTGCACGGCT  1000
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCCAGGAGGAACCAA-CACTTAGGGATTTCTTTTCCTGATGTGCACGGCT  998

seq1  TCTCATCCCTGAGACATGCTCGGCCTATGTGGAAATATGTAAGTCATGTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCCCTGAGACATGCTCGGCCTATGTGGAAATATGTAAGTCATGTG  1048

seq1  GAGAAGCATGAAAGAAATGGGATCTGTCCTTCAATCATG-TCACTCGGTG  1099
      ||| |||||| |||||   |||||||||||||| ||||| || ||| |||
seq2  GAG-AGCATG-AAGAA--TGGATCTGTCCTTCATTCATGTTCCCTC-GTG  1093

seq1  CTTTATTTCACTTCCAGAAATGGAGGGGAAACAAGACCTTATAAAAGACC  1149
      ||||||||||||||||||||| ||||   ||| ||| ||||||||  |||
seq2  CTTTATTTCACTTCCAGAAAT-GAGG---AAC-AGAACTTATAAAGAACC  1138

seq1  AAAAGCTTTAAGTAGGTTTTGATTCTTGTCA-GGTGCTCTGCCTCATATT  1198
      ||| |||   |||||   ||||||||||||| ||| ||| |||| ||   
seq2  AAAGGCT---AGTAG--CTTGATTCTTGTCAGGGTCCTC-GCCTAAT---  1179

seq1  CACACCTAGTGGTGTGGATGGAGGCTGGAGCCATGGAAAAAGAAGTCAAA  1248
        |||||  || |||  || ||| |||||  ||| |  ||||||||||||
seq2  --CACCTTATGTTGT--AT-GAGCCTGGA--CATTG--AAAGAAGTCAAA  1220


seq1: chr16_41624298_41625409
seq2: B6Ng01-250A15.g_66_1166 (reverse)

seq1  TCTGAGGACTTTGGAAATGTCTGCTTTGAACTTTAATTCAATGATGATGC  50
      ||||||||  || ||||||||||| ||||||||| |||||||||||||||
seq2  TCTGAGGAACTTTGAAATGTCTGC-TTGAACTTT-ATTCAATGATGATGC  48

seq1  ATCCTGAAAAGAATCAGGGCTGTATCCCTGGGACACGAAGGAGACAGGAC  100
      || |||||||| |||| |||||||| ||||||||||||| |||||| |||
seq2  AT-CTGAAAAG-ATCA-GGCTGTAT-CCTGGGACACGAA-GAGACA-GAC  92

seq1  AATTAGTTAAAATCAGGATTCAGATGAAAGGCAGGACAATTACTTCAGGA  150
       ||||||||||||||||| ||||||| |||||||||||||||||||||||
seq2  -ATTAGTTAAAATCAGGA-TCAGATG-AAGGCAGGACAATTACTTCAGGA  139

seq1  ACCTCCATCTCTCAAAATACATTCTGGCTTAGGCTAAAGAAAAACTCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCATCTCTCAAAATACATTCTGGCTTAGGCTAAAGAAAAACTCTGG  189

seq1  CAGTAAATAGTTGAAGCTTCAGTAGTGTGAAGTGCTATGGAGGGTCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAATAGTTGAAGCTTCAGTAGTGTGAAGTGCTATGGAGGGTCTCTT  239

seq1  GAATCCTGACCATTCTTTCTCGGTCTCAGCTTAAACAATAAAAGTTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCTGACCATTCTTTCTCGGTCTCAGCTTAAACAATAAAAGTTTTAA  289

seq1  AATAACTAATGAGCATGGAGTTGAGAAATCTTAGAAGCCCCACAACATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTAATGAGCATGGAGTTGAGAAATCTTAGAAGCCCCACAACATTT  339

seq1  TTCCTGAATATTCCCTTAACTGAGTCATTAATGTAATACATTCTATTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAATATTCCCTTAACTGAGTCATTAATGTAATACATTCTATTGAT  389

seq1  TATGTTTTGAAGTGGATCAACTGATATATAATTTTTGTGTTTTTATGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTGAAGTGGATCAACTGATATATAATTTTTGTGTTTTTATGAAT  439

seq1  AAGATAATAAGTGCAAATGTATAAAGGGAGGGCCTGTGGTCGCTGTATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAATAAGTGCAAATGTATAAAGGGAGGGCCTGTGGTCGCTGTATAG  489

seq1  TTGAATGTAAAAGGATTACATGACAACTTACACGATATCCCTATAGCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGTAAAAGGATTACATGACAACTTACACGATATCCCTATAGCCAC  539

seq1  ACTCCAACACTTTGACTCCTTCCTACACCTTCTGCATCGCTACCTCTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAACACTTTGACTCCTTCCTACACCTTCTGCATCGCTACCTCTGAT  589

seq1  TCCAGTTTATTTTTAAAGATTTGTTTGTAACAATTCAATTAATGTGTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTTATTTTTAAAGATTTGTTTGTAACAATTCAATTAATGTGTCCC  639

seq1  TTGCATAGAGTGGAATCAGTGGGGATTTCTGATGGAATCTGTTAGGTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATAGAGTGGAATCAGTGGGGATTTCTGATGGAATCTGTTAGGTGAG  689

seq1  AACTGTCTTCAAGGATAGGAGAGCCCGCTAAGGAATCAAACTTCCTCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCTTCAAGGATAGGAGAGCCCGCTAAGGAATCAAACTTCCTCACA  739

seq1  TGAAGCAATTAAGTAATGATACCAAGGAACGACGCTCAATTAAATATTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAATTAAGTAATGATACCAAGGAACGACGCTCAATTAAATATTGT  789

seq1  CAAGTATCATAATTATATATTTCAAATGATGACTCCTGTTCATAGAACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATCATAATTATATATTTCAAATGATGACTCCTGTTCATAGAACTA  839

seq1  GCCAGAGTTAATTGATCATTTTTGAATAATTTACTGGAAGAGTAGATGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGTTAATTGATCATTTTTGAATAATTTACTGGAAGAGTAGATGAA  889

seq1  TATAATTTATCTTTGTCTGAATTTTCTCAGTTAGGTCACTGAACCCTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTATCTTTGTCTGAATTTTCTCAGTTAGGTCACTGAACCCTTTT  939

seq1  CATCGCTTAATAACATTCGTAGGCATGCAGCGTTATTAACCCTCATTTCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGCTTAATAACATTCGTAGGCATGCAGCGTTATTAACCCTCATTTCC  989

seq1  TCTTGGTTTGCCTGCAGATGCAGCTGTCGAGTGATCCCTATATTTTAGCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTTTGCCTGCAGATGCAGCTGTCGAGTGATCCCTATATTTTAGCT  1039

seq1  TAGGTATAACACTCTGATTAACCAGAGGTCAAACTATGGCTGATCACTAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATAACACTCTGATTAACCAGAGGTCAAACTATGGCTGATCACTAT  1089

seq1  CATTCTGAATTC  1112
      ||||||||||||
seq2  CATTCTGAATTC  1101


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