BAC Information

Click to search

BAC

Clone NameB6Ng01-253K13
Chromosome13 (Build37)16 (Build37)
Map Location 117,105,431 - 117,105,73060,783,390 - 60,784,530
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100041023, LOC547402, LOC100041045, EG623174, Isl1
Downstream geneEG668276, Gm280, LOC100041169, Parp8, LOC668288, LOC623312, Emb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253K13.bB6Ng01-253K13.g
ACCGA060332GA060333
length9491,133
definitionB6Ng01-253K13.b B6Ng01-253K13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(117,105,431 - 117,105,730)(60,783,390 - 60,784,530)
sequence
gaattctcacatggcaagaacatgaaaacaggtactgatgcataggccat
ggagcggtactattactgccttgctcctcatgtaatccttggcctactta
tcaaaaccaggcccagtagccttaggatggcatcatccataattggctgc
acctcagtggtcaatcacttttatcaaaggcttgcctatagcccaatctt
atggaggcatttctataattaatattttctcatttcagatgacaaaaaaa
tgtgttacatagacataaaacgacccagcacaaggaactaaagttaagga
tgagttacgttattaaaaactacctttcataaagcattctgctggtttga
ataagaaagcccctcataggctaagatgtttgactccttgattcccagtt
ggtgggactgtttggataggtgtacaatgggtggttttattggaggaagt
acatcagtgtgaaatgaaagtatgtttgtgaactgaagtttcacaaacct
tctggcatcccaatgcactctccaatttctttttttttaatttttaatat
ttttattatgtattttcctcaattacatttccaatgctatcccaaaagtc
ccccataccctccccctccactcccctacccacccactcccactttttgg
ccctggtgttcccctgtactggggctagagatatgagctctggggtacgg
gttagttcatattgttgttccacctatagggttgcagatccctttagctc
cttgggtactttctctagctcctccattgggggccctgtgatccatctaa
tagctgactgtgagcatccactttctgtgttttgctaggcccggcatagt
ttcacaagagacagccatatctgggtttctttcagcaaaatctttgctag
tgtgtgcaatggtgtcagcgtttggatgctgattatggggtgggatccc

gaattcactcacagcccacatgttactgttctaccaaactttatacagca
agacagagatgatatgatattttttacatgataatgtatctttattcata
attttctttattctctatattatttatcatatctttagtagaaaataaat
ttagtttgttctttaatgttttgttcgtttgtataatgaagtaagactac
atatctagtacctctgagaaaagtattctaccactaacctctagttccag
tttctcactgatttttattacatccaagtgttttccctacctttaaaatt
taatttctctctttttaaaaaactttatatgtgctttacaagcggcactt
tcataagtatttttccttccagtcattacttcctacattgagacatcaga
acttcataggtcaacaatatgaaattgagtaaatatacatttctaaagat
tgtaaatgtctttcttcttattctaaagtctgtgaccatcccagtatttc
atcttgtctttgactaaaagaagagggaatgtaacctatttgatgatata
cgttaatgattcagaaatggtacactgagtactagaaaagggagtgaaag
aagatggaaagtcattgatctgtggcatcggagggtgttgatacattact
aacaataaagcctttgacatttcaaaaaggttttataatcagttgcatga
ttggcatgagaaccatctccaaaaatagaagtcaaggacttctaagatct
atctcagaggaatagatattagtattcagattctcacctgggaacttttc
attatcaacaattatatataggaaacttaggcttcattaattatatattg
aacatttgctatttaaaaattattatttatttaacacatattttatatta
tggacacatattatattatgttatgaacacctactaaatgcaggtactaa
atgaaaaggatgaactatagaattagttgaacttcaaatgaaaaaaaaat
aaatatattcacaataattacaatagatagaaaaatagtagtaatatagt
cttaataatctatctatctatcctatcctatagaagagatgcaatacata
ccctaccagttacacaacacactagcacacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_117105431_117105730
seq2: B6Ng01-253K13.b_598_817 (reverse)

seq1  AGCTAGAGAAAGTACCCAA-GAGCTGAAGGGGTCTCCAACCCTATAGGTG  49
      ||||||||||||||||||| ||||| ||||| ||| ||||||||||||||
seq2  AGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTG  50

seq1  GAACAACAATATGAACTAATCAGTACCCCCCAGAGCTCATATCTCTAGCT  99
      ||||||||||||||||||| | |||  ||||||||||||||||||||   
seq2  GAACAACAATATGAACTAACCCGTA--CCCCAGAGCTCATATCTCTA---  95

seq1  GCATATGTATCAGAAGATGGCCTAATTGGCCATCGCTGGGAAGAGAGGCC  149
                                                        
seq2  --------------------------------------------------  95

seq1  CCTTGGTATTGCAAACTTTATATGCCTCAGTACAGGGGAACACCAGGGCC  199
                             ||| |||||||||||||||||||||||
seq2  -----------------------GCCCCAGTACAGGGGAACACCAGGGCC  122

seq1  AAGAAGTGGGAGTGGGTGGGTAGGGAAGCAGGGTGGGGGGAGGGTATAGG  249
      || |||||||||||||||||||||   | || |  |||||||||||| ||
seq2  AAAAAGTGGGAGTGGGTGGGTAGG---GGAGTGGAGGGGGAGGGTATGGG  169

seq1  GGACTTTTGGGATAGCATTTGAAATGTAAATGAAGAAAATATCTAATAAA  299
      ||||||||||||||||||| ||||||||| ||| |||||||  |||||||
seq2  GGACTTTTGGGATAGCATTGGAAATGTAATTGAGGAAAATACATAATAAA  219

seq1  A  300
      |
seq2  A  220


seq1: chr16_60783390_60784530
seq2: B6Ng01-253K13.g_67_1199

seq1  GAATTCACTCACAGCCCACATGTTACTGTTCTACCAAACTTTATACAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCACAGCCCACATGTTACTGTTCTACCAAACTTTATACAGCA  50

seq1  AGACAGAGATGATATGATATTTTTTACATGATAATGTATCTTTATTCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGATGATATGATATTTTTTACATGATAATGTATCTTTATTCATA  100

seq1  ATTTTCTTTATTCTCTATATTATTTATCATATCTTTAGTAGAAAATAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTTATTCTCTATATTATTTATCATATCTTTAGTAGAAAATAAAT  150

seq1  TTAGTTTGTTCTTTAATGTTTTGTTCGTTTGTATAATGAAGTAAGACTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTGTTCTTTAATGTTTTGTTCGTTTGTATAATGAAGTAAGACTAC  200

seq1  ATATCTAGTACCTCTGAGAAAAGTATTCTACCACTAACCTCTAGTTCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTAGTACCTCTGAGAAAAGTATTCTACCACTAACCTCTAGTTCCAG  250

seq1  TTTCTCACTGATTTTTATTACATCCAAGTGTTTTCCCTACCTTTAAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCACTGATTTTTATTACATCCAAGTGTTTTCCCTACCTTTAAAATT  300

seq1  TAATTTCTCTCTTTTTAAAAAACTTTATATGTGCTTTACAAGCGGCACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCTCTCTTTTTAAAAAACTTTATATGTGCTTTACAAGCGGCACTT  350

seq1  TCATAAGTATTTTTCCTTCCAGTCATTACTTCCTACATTGAGACATCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAGTATTTTTCCTTCCAGTCATTACTTCCTACATTGAGACATCAGA  400

seq1  ACTTCATAGGTCAACAATATGAAATTGAGTAAATATACATTTCTAAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATAGGTCAACAATATGAAATTGAGTAAATATACATTTCTAAAGAT  450

seq1  TGTAAATGTCTTTCTTCTTATTCTAAAGTCTGTGACCATCCCAGTATTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATGTCTTTCTTCTTATTCTAAAGTCTGTGACCATCCCAGTATTTC  500

seq1  ATCTTGTCTTTGACTAAAAGAAGAGGGAATGTAACCTATTTGATGATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTCTTTGACTAAAAGAAGAGGGAATGTAACCTATTTGATGATATA  550

seq1  CGTTAATGATTCAGAAATGGTACACTGAGTACTAGAAAAGGGAGTGAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAATGATTCAGAAATGGTACACTGAGTACTAGAAAAGGGAGTGAAAG  600

seq1  AAGATGGAAAGTCATTGATCTGTGGCATCGGAGGGTGTTGATACATTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGAAAGTCATTGATCTGTGGCATCGGAGGGTGTTGATACATTACT  650

seq1  AACAATAAAGCCTTTGACATTTCAAAAAGGTTTTATAATCAGTTGCATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAAAGCCTTTGACATTTCAAAAAGGTTTTATAATCAGTTGCATGA  700

seq1  TTGGCATGAGAACCATCTCCAAAAATAGAAGTCAAGGACTTCTAAGATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATGAGAACCATCTCCAAAAATAGAAGTCAAGGACTTCTAAGATCT  750

seq1  ATCTCAGAGGAATAGATATTAGTATTCAGATTCTCACCTGGGAACTTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGAGGAATAGATATTAGTATTCAGATTCTCACCTGGGAACTTTTC  800

seq1  ATTATCAACAATTATATATAGGAAACTTAGGCTTCATTAATTATATATTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCAACAATTATATATAGGAAACTTAGGCTTCATTAATTATATATTG  850

seq1  AACATTTGCTATTTAAAAATTATTATTTATTTAACACATATTTTATATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTGCTATTTAAAAATTATTATTTATTTAACACATATTTTATATTA  900

seq1  TGGACACATATTATATTATGTTATGAACACCTACTAAATGCAGGTACTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACACATATTATATTATGTTATGAACACCTACTAAATGCAGGTACTAA  950

seq1  ATGAAAAGGATGAACTATAGAATTAGTTGAACTTCAAATG--AAAAAAAT  998
      ||||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  ATGAAAAGGATGAACTATAGAATTAGTTGAACTTCAAATGAAAAAAAAAT  1000

seq1  AAATATATTCACAAAATAAATACAATAAGAATAGAAAAAATAGGTAGTAA  1048
      ||||||||||||  ||||| |||||||   |||| ||||||| |||||||
seq2  AAATATATTCAC--AATAATTACAATA--GATAG-AAAAATA-GTAGTAA  1044

seq1  TATAGTCTTAATAATCTATCTATCTAT-CTAT-CTATAG-AGAGATGCAC  1095
      ||||||||||||||||||||||||||| |||| |||||| ||||||||| 
seq2  TATAGTCTTAATAATCTATCTATCTATCCTATCCTATAGAAGAGATGCA-  1093

seq1  ATACATACACCACACAAGTACACACAAACACACACAAGCACACACA  1141
      |||||||| | || ||  ||||||     |||||| ||||||||||
seq2  ATACATACCCTAC-CAGTTACACA-----ACACACTAGCACACACA  1133


| Home | SequenceCutter | Blast | Download |