BAC Information

Click to search

BAC

Clone NameB6Ng01-254H20
Chromosome16 (Build37)
Map Location 27,832,857 - 27,833,921
singlet/doubletsinglet
Overlap genenone
Upstream geneGm606, Ostn, Uts2d, Ccdc50
Downstream geneFgf12, 1600021P15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254H20.bB6Ng01-254H20.g
ACCGA060942GA060943
length1,0651,120
definitionB6Ng01-254H20.b B6Ng01-254H20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttttacccactctatacagaactatgaaaactagaacctagtct
aaattcagtgactgtagcatttgaatgcctctctggactcagttttatat
taattagggcatcaatttatacaatctacaaaaaaatcttcagctattca
atgtgaacttatttttattcgtgtctaaaatgagggaagtggagttaatc
attcaaatacaaaaaataatattgggtgtttttcaatttcacaacaaaat
atctttataaaaacaactttactacaaatagttgcaagaataacagatat
gtatctgaaaaatgaaatataaagatgaacaaatatgaaagtatcttaaa
gtttcagcaaaattaatgactgtaatagaaaaatcttaacaaatgattgt
gatatgctttttaagtcataagaaaccacaacctacaagccaagttgaat
atgaagcagcatgttcctaagtctggattttgtaaaaattgtttatgtca
gttttctagcttgattatttttttatcaatctctgaattagaataatata
gatgttcttagaaaaatattttgttggttattttatttatttacatttca
aaggttattccccttctcagtttcccctctatacctctcccctatgctat
ccctatcaatacttctacgagggtgattaccccatccacccaaccactcc
ctcctcactgccctagaattttccttcctacacttgggcattgagcctct
acagaaccaagatcctcccctcccattgaagccagataaggcaattccct
gctacatatgcagctgaggccaggggtccctccatgtgcactctttggtt
gataatttagtctctgggagctctgtggtgtttggttggttgatattgtt
gatcttcctatgggattgcaaaccccttcagctccttcagtccttcccct
tcattggggttccccatgcttagtctgatcattgggctgcaagcatccac
atctgtattgaccaggctctttcagagcgctcagtggacatctacaccag
gatccttcagcaagt

gaattccaccattagaggagcatgggacaaattgccatggcagggaagca
gagaagacagacatacgtaagcctgctgccatgtatgaatttgggaaaat
gacctcaggagctgttctcctgattggatctgtgacagtagagataaaat
ataaatttcatgtaaacataaatataagtaaaatatagatttagcaagtt
ttaattcagtaggggaatgtgtgctagccatggggaggtttggaagtacc
caaccattgagctagtaaaggcatatcaaaatataaatattgcgtgtttg
tctttcatttgttaatccagagctttggggcaagtgcagaaccaccagga
gctcagagagggtgcctttcccccagacttaagccagctaaatagacctt
aattgcttgccacagttggtcttcctctgacctagaccacccaaggtgga
ctcttctgacctaggtggaggtcttcctccttgcctgcagtttcctgtag
gagcagactgcctgttgagcttgctttacaacattgtccagtcaaaacaa
aacaatctaatccagctgaaacaaaggatgggtctttgggtttcctctat
ataaatgcagagctgaaaattaaactttgagcttttatcaaaaatatttg
tcttggcttcattcttctctctctcatccatcctttttcattctcagcct
ccctttcaggtgtacccagttctccccgtggctacaggacagctacaagg
gaggattaactatttacagctacagatgatacataacaattctggatcac
agacatggaatgtgggtcatggctcacaacagatattaaactttcttggg
tatttctcctctcatccttgtgtgaacaatttaaatgaaagaaattatat
tgactcatagtgtccagtggtttatcccattataacttcccttggagaat
caaaatattcatgagtctcttaacattggatgggagctgcctctgactct
gttccctgccattgatctcctcccctccctattgggactgtctgattgac
tcaggaatagagagtgctagttcttctggactagatgttccatggtgggt
atagtacaccaatgcgagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_27832857_27833921
seq2: B6Ng01-254H20.b_45_1109

seq1  GAATTCTTTTACCCACTCTATACAGAACTATGAAAACTAGAACCTAGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTACCCACTCTATACAGAACTATGAAAACTAGAACCTAGTCT  50

seq1  AAATTCAGTGACTGTAGCATTTGAATGCCTCTCTGGACTCAGTTTTATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAGTGACTGTAGCATTTGAATGCCTCTCTGGACTCAGTTTTATAT  100

seq1  TAATTAGGGCATCAATTTATACAATCTACAAAAAAATCTTCAGCTATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGGGCATCAATTTATACAATCTACAAAAAAATCTTCAGCTATTCA  150

seq1  ATGTGAACTTATTTTTATTCGTGTCTAAAATGAGGGAAGTGGAGTTAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAACTTATTTTTATTCGTGTCTAAAATGAGGGAAGTGGAGTTAATC  200

seq1  ATTCAAATACAAAAAATAATATTGGGTGTTTTTCAATTTCACAACAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAATACAAAAAATAATATTGGGTGTTTTTCAATTTCACAACAAAAT  250

seq1  ATCTTTATAAAAACAACTTTACTACAAATAGTTGCAAGAATAACAGATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTATAAAAACAACTTTACTACAAATAGTTGCAAGAATAACAGATAT  300

seq1  GTATCTGAAAAATGAAATATAAAGATGAACAAATATGAAAGTATCTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGAAAAATGAAATATAAAGATGAACAAATATGAAAGTATCTTAAA  350

seq1  GTTTCAGCAAAATTAATGACTGTAATAGAAAAATCTTAACAAATGATTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGCAAAATTAATGACTGTAATAGAAAAATCTTAACAAATGATTGT  400

seq1  GATATGCTTTTTAAGTCATAAGAAACCACAACCTACAAGCCAAGTTGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGCTTTTTAAGTCATAAGAAACCACAACCTACAAGCCAAGTTGAAT  450

seq1  ATGAAGCAGCATGTTCCTAAGTCTGGATTTTGTAAAAATTGTTTATGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCAGCATGTTCCTAAGTCTGGATTTTGTAAAAATTGTTTATGTCA  500

seq1  GTTTTCTAGCTTGATTATTTTTTTATCAATCTCTGAATTAGAATAATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTAGCTTGATTATTTTTTTATCAATCTCTGAATTAGAATAATATA  550

seq1  GATGTTCTTAGAAAAATATTTTGTTGGTTATTTTATTTATTTACATTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCTTAGAAAAATATTTTGTTGGTTATTTTATTTATTTACATTTCA  600

seq1  AAGGTTATTCCCCTTCTCAGTTTCCCCTCTATACCTCTCCCCTATGCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTATTCCCCTTCTCAGTTTCCCCTCTATACCTCTCCCCTATGCTAT  650

seq1  CCCTATCAATACTTCTACGAGGGTGATTACCCCATCCACCCAACCACTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATCAATACTTCTACGAGGGTGATTACCCCATCCACCCAACCACTCC  700

seq1  CTCCTCACTGCCCTAGAATTTTCCTTCCTACACTTGGGCATTGAGCCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCACTGCCCTAGAATTTTCCTTCCTACACTTGGGCATTGAGCCTCT  750

seq1  ACAGAACCAAGATCCTCCCCTCCCATTGAAGCCAGATAAGGCAATTCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACCAAGATCCTCCCCTCCCATTGAAGCCAGATAAGGCAATTCCCT  800

seq1  GCTACATATGCAGCTGAGGCCAGGGGTCCCTCCATGTGCACTCTTTGGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATATGCAGCTGAGGCCAGGGGTCCCTCCATGTGCACTCTTTGGTT  850

seq1  GATAATTTAGTCTCTGGGAGCTCTGTGGTGTTTGGTTGGTTGATATTGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTTAGTCTCTGGGAGCTCTGTGGTGTTTGGTTGGTTGATATTGTT  900

seq1  GATCTTCCTATGGGATTGCAAACCCCTTCAGCTCCTTCAGTCCTTCCCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCCTATGGGATTGCAAACCCCTTCAGCTCCTTCAGTCCTTCCCCT  950

seq1  TCATTGGGG-TCCCCATGCTTAGTCTGATCATT-GGCTGCAAGCATCCAC  998
      ||||||||| ||||||||||||||||||||||| ||||||||||||||||
seq2  TCATTGGGGTTCCCCATGCTTAGTCTGATCATTGGGCTGCAAGCATCCAC  1000

seq1  ATCTGTATTGACCAGGCTCTTTCAGAGCCGCTCAGTGGACATCTACACCA  1048
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATCTGTATTGACCAGGCTCTTTCAGAG-CGCTCAGTGGACATCTACACCA  1049

seq1  AGATCCTTTCAGCAAGT  1065
       ||||| ||||||||||
seq2  GGATCC-TTCAGCAAGT  1065


| Home | SequenceCutter | Blast | Download |