BAC Information

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BAC

Clone NameB6Ng01-254L23
Chromosome16 (Build37)19 (Build37)
Map Location 23,088,306 - 23,088,60218,052,296 - 18,053,140
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneIgf2bp2, EG545152, EG666421, Sfrs10, LOC100043507, Etv5, Dgkg, LOC671242, LOC666459, Crygs, Tbccd1, Dnajb11, Ahsg, Fetub, Hrg, Kng2, LOC624311, LOC666486, LOC666489, Kng1
Downstream geneLOC666493, Eif4a2, Rfc4, Adipoq, LOC100043541, EG625835, BC106179, St6gal1, Rtp1, Masp1, LOC100043018, Rtp4, EG625969, LOC100043023, Sst, Rtp2, Bcl6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254L23.bB6Ng01-254L23.g
ACCGA061135GA061136
length1,021850
definitionB6Ng01-254L23.b B6Ng01-254L23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(23,088,306 - 23,088,602)(18,052,296 - 18,053,140)
sequence
gaattcaagggcatcaccaaggacccagattcttccacatactgccattc
tttgggtaccagtttgctcagccttttcttggctatgagataatttgaga
tagttattatcagtccatgcataacattcagagcttccaattttgagaga
aagaagtgatctcttcccctttcctgttcttggccaggaggtgagcacat
gataggtgctcctgtcacaggtgctgtgtcagcacatccccgaaatgatt
ggagccaccgactgggagcaaatctctaaaatttctttttccaaaaagag
aaatgtgagtcagattgatgagtattctaaaaaaaagaggatggggctgg
agagatggttcagccatttataatgtttgtggagccatccgcagcaccat
ctggtagctcacaaccatctgaaatggcagtgccaggtgacccaatgccc
tcttttgacctctattctcaatgggcatggtatacaggcatatatgcagg
aaaaatacttatatttaaagtcaaaaataaagggtagttagaacttctgt
gtatagctagctacaataagcttggattcaaaccaaccactgcaacagcc
tagcagcactcccctgcacctatgtatgagactttgtgatttttatcttt
ataagctgctcctgggaaacagtcagagtggcagactcagctcccaagtc
tgacctacatccctgcttgatgagtcccagggtgcctgttcaataaacta
tatctgcttgattgagttgattgtctaagtggtctttggggtgactcctg
aaccctaacatgaggaaagagaagtacgtactgctgatgtccctgtgaac
tggtgcagccagcatggaaataagtgtggagggctttctgaaaacaaaca
aacaaacaaacaaacaaacatatatcaatcactaaaaccgagaccacttg
tccaactgcacactttgaagtatgcacacaaaagctaccacagagatgtt
acacaactggtgtttattgct
gaattcatgaagttcttctccgactcccccactgaacacacaggaaaaat
catttcatgaaaaatgatccagggactgtgcagaggtcacactgctatga
agtgacaggacagagggactaatgaatgcaaaaaaagactctgcagaaac
ttaaaataccctaggagacataccagtaacagagatagaaaaaaaaaatc
cagaggtgtgtgtgtttgtgtgtgagtgtgtgtgcgtgcacgtgtgcatg
tgcgcgcgcacacgcacgttcacacacaggagaatgcaggtgctgatgat
agctaagggagttgaaagtaatgatgagctacccactgtggatgtaagaa
atcaaactctgatcccctggaagcacacatgctcttaaccaccaagtcac
cagcctcaggtttgtatcttccatcagaagcactgctgaaaaactcttgg
catcttccaggattcttctgtttggggagagcctggttataagtgttttt
ctccctgcctgaatctatgtgctaaaagatttcattttcttttttgatga
gggaaagaacaaacatcaggatgtcaatcttggaaaagtcaaaactgtcc
agacatcaggaggtgtctgatggaagggattttgcctgagagcaggtgtc
ttgaagaaagttcagaaaaaaaaaaaaaaaaagagtttgatttgatgaga
aggaattctcagcagagcccactggatgaagtttctaggactccttcagt
tgcattattgggcctggcactccagttatagctttggggaatgaaaccaa
tggagttttgaactggaataaggtggctgctggttatctatagaatggac

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_23088306_23088602
seq2: B6Ng01-254L23.b_452_965 (reverse)

seq1  TGTTTGTTTGCTTTTGCTTTTCCTTAAAGATTTGTTTGTTTGTTTGTTTT  50
      ||||||||||                    ||||||||||||||||||||
seq2  TGTTTGTTTG--------------------TTTGTTTGTTTGTTTGTTTT  30

seq1  GA----------------TTTTTCGAGACAGGGT-------TTCTC----  73
       |                | |||| |  | || |       ||| |    
seq2  CAGAAAGCCCTCCACACTTATTTCCATGCTGGCTGCACCAGTTCACAGGG  80

seq1  ---TGTGCAGT-----CCTGGCTGTCCT--------------GG------  95
         |  |||||     | |  || ||||              ||      
seq2  ACATCAGCAGTACGTACTTCTCTTTCCTCATGTTAGGGTTCAGGAGTCAC  130

seq1  ----------------------AACTCACTC--------------TGTAG  109
                            |||||| ||              | | |
seq2  CCCAAAGACCACTTAGACAATCAACTCAATCAAGCAGATATAGTTTATTG  180

seq1  ACCAGGCTGGCCTCGAACTCAGAAATCCG---------------------  138
      | |||||   ||| | |||||  || | |                     
seq2  AACAGGC-ACCCTGGGACTCATCAAGCAGGGATGTAGGTCAGACTTGGGA  229

seq1  CCTGCCTCTGCC------------TCCCAAGTGCTG-------GGATTAA  169
       |||  ||||||            ||||| | || |        ||| ||
seq2  GCTGAGTCTGCCACTCTGACTGTTTCCCAGGAGCAGCTTATAAAGATAAA  279

seq1  --------------------AGGTG----------------------TGC  177
                          |||||                      |||
seq2  AATCACAAAGTCTCATACATAGGTGCAGGGGAGTGCTGCTAGGCTGTTGC  329

seq1  A---------------CCA---CCACTG--CCCGGCTA-------AAGAT  200
      |               |||     | ||   |  ||||       ||| |
seq2  AGTGGTTGGTTTGAATCCAAGCTTATTGTAGCTAGCTATACACAGAAGTT  379

seq1  TTA-------TTTATTT---ATTTTGTGTATACGAAT---------ATAT  231
       ||       |||||||   | |||   |||| | ||         ||||
seq2  CTAACTACCCTTTATTTTTGACTTTAAATATAAGTATTTTTCCTGCATAT  429

seq1  GTGTAGGTA-GCTATCTCC-------AGACACATCAGAAGAGGGCATCAG  273
       ||   |||  | ||  ||       | | |  ||| ||||||||||  |
seq2  ATGCCTGTATACCATGCCCATTGAGAATAGAGGTCAAAAGAGGGCATTGG  479

seq1  ATC-----------CCATTACAGATGGTTGTGAGC  297
       ||           ||||| |||||||||||||||
seq2  GTCACCTGGCACTGCCATTTCAGATGGTTGTGAGC  514

seq1: chr19_18052296_18053140
seq2: B6Ng01-254L23.g_67_916

seq1  GAATTCATGAAGTTCTTCTCCGACTCCCCCACTGAACACACAGGAAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAAGTTCTTCTCCGACTCCCCCACTGAACACACAGGAAAAAT  50

seq1  CATTTCATGAAAAATGATCCAGGGACTGTGCAGAGGTCACACTGCTATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCATGAAAAATGATCCAGGGACTGTGCAGAGGTCACACTGCTATGA  100

seq1  AGTGACAGGACAGAGGGACTAATGAATGCAAAAAAAGACTCTGCAGAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACAGGACAGAGGGACTAATGAATGCAAAAAAAGACTCTGCAGAAAC  150

seq1  TTAAAATACCCTAGGAGACATACCAGTAACAGAGATAGAAAAAAAAAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATACCCTAGGAGACATACCAGTAACAGAGATAGAAAAAAAAAATC  200

seq1  CAGAGGTGTGTGTGTTTGTGTGTGAGTGTGTGTGCGTGCACGTGTGCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTGTGTGTGTTTGTGTGTGAGTGTGTGTGCGTGCACGTGTGCATG  250

seq1  TGCGCGCGCACACGCACGTTCACACACAGGAGAATGCAGGTGCTGATGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCGCGCACACGCACGTTCACACACAGGAGAATGCAGGTGCTGATGAT  300

seq1  AGCTAAGGGAGTTGAAAGTAATGATGAGCTACCCACTGTGGATGTAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAGGGAGTTGAAAGTAATGATGAGCTACCCACTGTGGATGTAAGAA  350

seq1  ATCAAACTCTGATCCCCTGGAAGCACACATGCTCTTAACCACCAAGTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACTCTGATCCCCTGGAAGCACACATGCTCTTAACCACCAAGTCAC  400

seq1  CAGCCTCAGGTTTGTATCTTCCATCAGAAGCACTGCTGAAAAACTCTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCAGGTTTGTATCTTCCATCAGAAGCACTGCTGAAAAACTCTTGG  450

seq1  CATCTTCCAGGATTCTTCTGTTTGGGGAGAGCCTGGTTATAAGTGTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCCAGGATTCTTCTGTTTGGGGAGAGCCTGGTTATAAGTGTTTTT  500

seq1  CTCCCTGCCTGAATCTATGTGCTAAAAGATTTCATTTTCTTTTTTGATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGCCTGAATCTATGTGCTAAAAGATTTCATTTTCTTTTTTGATGA  550

seq1  GGGAAAGAACAAACATCAGGATGTCAATCTTGGAAAAGTCAAAACTGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGAACAAACATCAGGATGTCAATCTTGGAAAAGTCAAAACTGTCC  600

seq1  AGACATCAGGAGGTGTCTGATGGAA-GGATTTTGCCTGAGAGCAGGTGTC  649
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGACATCAGGAGGTGTCTGATGGAAGGGATTTTGCCTGAGAGCAGGTGTC  650

seq1  TTGAAGAAAGTTCAG--AAAAAAAAAAAAAAAGAGTTTGATTTGATGAGA  697
      |||||||||||||||  |||||||||||||||||||||||||||||||||
seq2  TTGAAGAAAGTTCAGAAAAAAAAAAAAAAAAAGAGTTTGATTTGATGAGA  700

seq1  AGGAATTCTCAGCAGAGCCCACTGGATGAAG-TTCTAGGACTCCTTCAGT  746
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGGAATTCTCAGCAGAGCCCACTGGATGAAGTTTCTAGGACTCCTTCAGT  750

seq1  TGCATTATTGGGCCTGGCACTCCAGTTATAGCTTTGGGGAATGAAACCAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTATTGGGCCTGGCACTCCAGTTATAGCTTTGGGGAATGAAACCAA  800

seq1  TGGAGTTTTGAACTGGAAT-AGGTGGCTGCTGGTTATCTATAGAATGGAC  845
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGGAGTTTTGAACTGGAATAAGGTGGCTGCTGGTTATCTATAGAATGGAC  850