BAC Information

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BAC

Clone NameB6Ng01-255A07
Chromosome16 (Build37)
Map Location 87,087,949 - 87,240,484
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039780
Downstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63, Bach1, LOC100039901, Grik1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255A07.bB6Ng01-255A07.g
ACCGA061331GA061332
length1,1281,171
definitionB6Ng01-255A07.b B6Ng01-255A07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,087,949 - 87,089,082)(87,239,303 - 87,240,484)
sequence
gaattcataacaggaagtctataatggcaaaacagtaagaaaagaagaaa
aataagtttaaatgacataaaatcattactaacagtacatagaagatcta
cccctttctgaaaatctaaagaatacatttggaaagtatataaactatac
ttaccttgtttttatttttctcttttactagtgtaactaggagcatatta
tccagactcactgaaaaagagtcagaatctctgaagtggttactctacca
gtggggaattcatttattgctgagtgtaacagaaactggaataggaaacg
gctgagctatcaaattttctgtttggggaccactcagctcatgtcgttta
aactaaagttgacactttaaatgaatttattgctctcactttcttccagg
accagacagtagtccaactctcacacatggacatctttgggattatataa
ctaatccaaaagggacatattaatgtcacatttttttttcttcaatggtg
atctttccaaggccacttctttgatgtgatgtcatgttgtaatttgaagc
tgaaacttcctcttgcattacctggggaatcatgtacattttataagtaa
aatgacatttgtcaaatgatgcactgtggccttcagggtgaacaggagaa
tgaggaactcaagcttctgcagaaaacatggcggagtattcagagcaaag
tggtcaatgtaagaatgaagtcttcccaaagaattcagaaattcatggta
agattgtaaggcagagaatgaatttggcaatattaggagaaaacaccatc
agtagctcacattgaaatactttattttgttgatcaagaaatactaaatg
ttgtgctagtttctaatcagtggtgactagggtcttcacgtagtccattg
tctgtatataaaggaacacttgtctcgctagtgttaaaaaagaaagaaaa
gatctcagtgaatagatgatttatatttagtattaatcctagtgaccatc
tgaaagcttctttatgatactggttgatagataaaagaataacacacatg
ttttatagaatagtcgtctggaagagaaatttgtgtagcagtggaatttc
tggtaatatattgcttacagtgaactga

gaattcccttgctttgcctccccagtgctggtacagcaagatttttttat
aggtatgcaggggatttgaactcagatcctcatacttgcactacaagtgt
tttatcagccgagccttctcctcagtcccggaaacctgacaatgttgaga
ctccccctgggagtggtaaaagcttttattctcccttcattttaatctgg
gattatctgctttcgtctttaaaatgaggagatgtactgtgaaggtgaac
aggtcaagtcaggttgtctgctgaaggaacattccataatatcccagaat
aagttttgccctgcattcactggccttgactatgggaacttcccgtgaca
ctgctttgtgcttgtgctattatgtgttgttcgagggatctagctgcaga
tctagttaactttctaaatcagttcagaaatgactgaactaagataggaa
catgttccagctgggctttacttgcgcacacaatctattttaatgtagaa
ggtcaagaggttcgaagtagaggcagttggagatctgcaggcattggcta
ttcttcctggcttggagcgagatggggctttgtggtaagaaatttgagtg
acctctgttggctgagaatagcctctggatcctaattccgaaggaaatgg
atgctttggccttgcatccttgcaaagaaaaccaatggacgcagtttttt
actccttcacaggcttcagacccaaactgacacctgatttcgctgtagct
gctatcacttggccctagtgataacagcagagatgccagtcacacaggga
tagacttgtgacttagggagctgtgcgggagaaatgagtctgtcctacgt
ttgaggtgccgagttgtcagtggtccatccacagctctagataaccagca
gcttctgaagagcttgctctcttccctggtgtggcatctggacactgtca
tgagctcacgcccacatcagcctgcactgagcagagtgaggtactctggt
cacaatggttcagtctcagaagcaaggcctctaagccaaaccacgtgatt
gcagcagtatctcatatggacacagagtttctcttcctatcaccaccctc
acttctggattcttaagtacgctgagagacatggactggttgtaccttga
gcgtaatgtgacattttagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_87087949_87089082
seq2: B6Ng01-255A07.b_48_1175

seq1  GAATTCATAACAGGAAGTCTATAATGGCAAAACAGTAAGAAAAGAAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAACAGGAAGTCTATAATGGCAAAACAGTAAGAAAAGAAGAAA  50

seq1  AATAAGTTTAAATGACATAAAATCATTACTAACAGTACATAGAAGATCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTTTAAATGACATAAAATCATTACTAACAGTACATAGAAGATCTA  100

seq1  CCCCTTTCTGAAAATCTAAAGAATACATTTGGAAAGTATATAAACTATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTCTGAAAATCTAAAGAATACATTTGGAAAGTATATAAACTATAC  150

seq1  TTACCTTGTTTTTATTTTTCTCTTTTACTAGTGTAACTAGGAGCATATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTGTTTTTATTTTTCTCTTTTACTAGTGTAACTAGGAGCATATTA  200

seq1  TCCAGACTCACTGAAAAAGAGTCAGAATCTCTGAAGTGGTTACTCTACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACTCACTGAAAAAGAGTCAGAATCTCTGAAGTGGTTACTCTACCA  250

seq1  GTGGGGAATTCATTTATTGCTGAGTGTAACAGAAACTGGAATAGGAAACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGAATTCATTTATTGCTGAGTGTAACAGAAACTGGAATAGGAAACG  300

seq1  GCTGAGCTATCAAATTTTCTGTTTGGGGACCACTCAGCTCATGTCGTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCTATCAAATTTTCTGTTTGGGGACCACTCAGCTCATGTCGTTTA  350

seq1  AACTAAAGTTGACACTTTAAATGAATTTATTGCTCTCACTTTCTTCCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAGTTGACACTTTAAATGAATTTATTGCTCTCACTTTCTTCCAGG  400

seq1  ACCAGACAGTAGTCCAACTCTCACACATGGACATCTTTGGGATTATATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACAGTAGTCCAACTCTCACACATGGACATCTTTGGGATTATATAA  450

seq1  CTAATCCAAAAGGGACATATTAATGTCACATTTTTTTTTCTTCAATGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCCAAAAGGGACATATTAATGTCACATTTTTTTTTCTTCAATGGTG  500

seq1  ATCTTTCCAAGGCCACTTCTTTGATGTGATGTCATGTTGTAATTTGAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCCAAGGCCACTTCTTTGATGTGATGTCATGTTGTAATTTGAAGC  550

seq1  TGAAACTTCCTCTTGCATTACCTGGGGAATCATGTACATTTTATAAGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTTCCTCTTGCATTACCTGGGGAATCATGTACATTTTATAAGTAA  600

seq1  AATGACATTTGTCAAATGATGCACTGTGGCCTTCAGGGTGAACAGGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACATTTGTCAAATGATGCACTGTGGCCTTCAGGGTGAACAGGAGAA  650

seq1  TGAGGAACTCAAGCTTCTGCAGAAAACATGGCGGAGTATTCAGAGCAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAACTCAAGCTTCTGCAGAAAACATGGCGGAGTATTCAGAGCAAAG  700

seq1  TGGTCAATGTAAGAATGAAGTCTTCCCAAAGAATTCAGAAATTCATGGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAATGTAAGAATGAAGTCTTCCCAAAGAATTCAGAAATTCATGGTA  750

seq1  AGATTGTAAGGCAGAGAATGAATTTGGCAATATTAGGAGAAAACACCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTAAGGCAGAGAATGAATTTGGCAATATTAGGAGAAAACACCATC  800

seq1  AGTAGCTCACATTGAAATACTTTATTTTGTTGATCAAGAAATACTAAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTCACATTGAAATACTTTATTTTGTTGATCAAGAAATACTAAATG  850

seq1  TTGTGCTAGTTTCTAATCAGTGGTGACTAGGGTCTTCACGTAGTCCATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTAGTTTCTAATCAGTGGTGACTAGGGTCTTCACGTAGTCCATTG  900

seq1  TCTGTATATAAAGGAACACTTGTCTCGCTAGTGTTAAAAAAAGAAAAGAA  950
      ||||||||||||||||||||||||||||||||||| ||||||||||   |
seq2  TCTGTATATAAAGGAACACTTGTCTCGCTAGTGTT-AAAAAAGAAA--GA  947

seq1  AAAGATCTCAGTGAATAGATGATTTAATATTTAGTATTAATCCTAGTGAC  1000
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAAGATCTCAGTGAATAGATGATTT-ATATTTAGTATTAATCCTAGTGAC  996

seq1  CATCTGAAAGCTTCTTTATGATACTGGTTGATAAGATAAAAAGAAT-ACA  1049
      |||||||||||||||||||||||||||||||| |||| |||||||| |||
seq2  CATCTGAAAGCTTCTTTATGATACTGGTTGAT-AGAT-AAAAGAATAACA  1044

seq1  CACAATGTCTATAGAATAGTCGTCCTTGGAAGAG-AATTTGTGAGGCAAG  1098
      ||||   | |||||||||||||||  |||||||| ||||||||  || ||
seq2  CACATGTTTTATAGAATAGTCGTC--TGGAAGAGAAATTTGTGTAGC-AG  1091

seq1  TGGATATTCCCTGGTA--ATAATGC-TACAGTGAACTGA  1134
      ||||  ||  ||||||  ||| ||| |||||||||||||
seq2  TGGAATTT--CTGGTAATATATTGCTTACAGTGAACTGA  1128


seq1: chr16_87239303_87240484
seq2: B6Ng01-255A07.g_66_1236 (reverse)

seq1  TACTAAAAATGGTCACATTCAGCCTTCTAAAAGGAACAAACAGTGCATGT  50
      ||||||||   ||||||||  ||  ||   |||| |||| |||| |||||
seq2  TACTAAAA--TGTCACATTACGC--TC---AAGGTACAACCAGTCCATGT  43

seq1  -GCTCAGCGTGACATAAAGACTCCAGAAGTGAGGTGGGTGATGAGAAAGA  99
        |||||||| || | |||| |||||||||||||  |||||| || ||||
seq2  CTCTCAGCGT-AC-TTAAGAATCCAGAAGTGAGGGTGGTGAT-AGGAAGA  90

seq1  GAAACTCTGTGTCC--ATGAGATACTGCTGCAAATCCAACGTGGTTT-GC  146
      ||||||||||||||  ||||||||||||||| ||||  ||||||||| ||
seq2  GAAACTCTGTGTCCATATGAGATACTGCTGC-AATC--ACGTGGTTTGGC  137

seq1  TTAGGAGGCCTGGCTTCTGGAGACTGACCCATTGTGACCAGAGTACCTCC  196
      ||| ||||||| |||||| |||||||| |||||||||||||||||||| |
seq2  TTA-GAGGCCTTGCTTCT-GAGACTGAACCATTGTGACCAGAGTACCT-C  184

seq1  ACTCTGCTCAGTGCAGGCTGATGTGGGCGTGAGCTCATGACAGTGTCCAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCTCAGTGCAGGCTGATGTGGGCGTGAGCTCATGACAGTGTCCAG  234

seq1  ATGCCACACCAGGGAAGAGAGCAAGCTCTTCAGAAGCTGCTGGTTATCTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCACACCAGGGAAGAGAGCAAGCTCTTCAGAAGCTGCTGGTTATCTA  284

seq1  GAGCTGTGGATGGACCACTGACAACTCGGCACCTC-AACGTAGGACAGAC  345
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAGCTGTGGATGGACCACTGACAACTCGGCACCTCAAACGTAGGACAGAC  334

seq1  TCATTTCTCCCGCACAGCTCCCTAAGTCACAAGTCTATCCCTGTGTGACT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTCCCGCACAGCTCCCTAAGTCACAAGTCTATCCCTGTGTGACT  384

seq1  GGCATCTCTGCTGTTATCACTAGGGCCAAGTGATAGCAGCTACAGCGAAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCTCTGCTGTTATCACTAGGGCCAAGTGATAGCAGCTACAGCGAAA  434

seq1  TCAGGTGTCAGTTTGGGTCTGAAGCCTGTGAAGGAGTAAAAAACTGCGTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGTCAGTTTGGGTCTGAAGCCTGTGAAGGAGTAAAAAACTGCGTC  484

seq1  CATTGGTTTTCTTTGCAAGGATGCAAGGCCAAAGCATCCATTTCCTTCGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGTTTTCTTTGCAAGGATGCAAGGCCAAAGCATCCATTTCCTTCGG  534

seq1  AATTAGGATCCAGAGGCTATTCTCAGCCAACAGAGGTCACTCAAATTTCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGGATCCAGAGGCTATTCTCAGCCAACAGAGGTCACTCAAATTTCT  584

seq1  TACCACAAAGCCCCATCTCGCTCCAAGCCAGGAAGAATAGCCAATGCCTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACAAAGCCCCATCTCGCTCCAAGCCAGGAAGAATAGCCAATGCCTG  634

seq1  CAGATCTCCAACTGCCTCTACTTCGAACCTCTTGACCTTCTACATTAAAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTCCAACTGCCTCTACTTCGAACCTCTTGACCTTCTACATTAAAA  684

seq1  TAGATTGTGTGCGCAAGTAAAGCCCAGCTGGAACATGTTCCTATCTTAGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTGTGTGCGCAAGTAAAGCCCAGCTGGAACATGTTCCTATCTTAGT  734

seq1  TCAGTCATTTCTGAACTGATTTAGAAAGTTAACTAGATCTGCAGCTAGAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCATTTCTGAACTGATTTAGAAAGTTAACTAGATCTGCAGCTAGAT  784

seq1  CCCTCGAACAACACATAATAGCACAAGCACAAAGCAGTGTCACGGGAAGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCGAACAACACATAATAGCACAAGCACAAAGCAGTGTCACGGGAAGT  834

seq1  TCCCATAGTCAAGGCCAGTGAATGCAGGGCAAAACTTATTCTGGGATATT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATAGTCAAGGCCAGTGAATGCAGGGCAAAACTTATTCTGGGATATT  884

seq1  ATGGAATGTTCCTTCAGCAGACAACCTGACTTGACCTGTTCACCTTCACA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATGTTCCTTCAGCAGACAACCTGACTTGACCTGTTCACCTTCACA  934

seq1  GTACATCTCCTCATTTTAAAGACGAAAGCAGATAATCCCAGATTAAAATG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATCTCCTCATTTTAAAGACGAAAGCAGATAATCCCAGATTAAAATG  984

seq1  AAGGGAGAATAAAAGCTTTTACCACTCCCAGGGGGAGTCTCAACATTGTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGAATAAAAGCTTTTACCACTCCCAGGGGGAGTCTCAACATTGTC  1034

seq1  AGGTTTCCGGGACTGAGGAGAAGGCTCGGCTGATAAAACACTTGTAGTGC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCCGGGACTGAGGAGAAGGCTCGGCTGATAAAACACTTGTAGTGC  1084

seq1  AAGTATGAGGATCTGAGTTCAAATCCCCTGCATACCTATAAAAAAATCTT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGAGGATCTGAGTTCAAATCCCCTGCATACCTATAAAAAAATCTT  1134

seq1  GCTGTACCAGCACTGGGGAGGCAAAGCAAGGGAATTC  1182
      |||||||||||||||||||||||||||||||||||||
seq2  GCTGTACCAGCACTGGGGAGGCAAAGCAAGGGAATTC  1171


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