BAC Information

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BAC

Clone NameB6Ng01-255N06
Chromosome16 (Build37)
Map Location 80,295,001 - 80,421,408
singlet/doubletdoublet
Overlap genenone
Upstream geneEG383172, 1700066C05Rik
Downstream geneLOC621365, LOC100039724, Ncam2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255N06.bB6Ng01-255N06.g
ACCGA061940GA061941
length1,1831,110
definitionB6Ng01-255N06.b B6Ng01-255N06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,295,001 - 80,296,188)(80,420,285 - 80,421,408)
sequence
gaattctctttaatagggacggggtttcgttttctctctctcttgctgct
ctctctcttgcttcttgctctcttgcttcctgcaccctggctcctgaaga
tgtaagaaataaagctttgccgcagaagattctggtctgtggtgttcttc
ctggccggtcgtgagaacgcgtctaataacatcgtggtaagctaacaata
gttgtattcagctatgacttctataaaccataacaactagggtggtacat
ttttccctgagggaataatagtgtaactcattccctggctttttgttgag
aatcagttttgggtctcatgaagatttaaaatttgtagattcttcattta
tatatttaactgtttttctgctggttttaccatgactatgattatcctta
caatgattaatattttcctctttgagtaaattgcttgcattttgttctac
atttttgtgctgtaacactgaaatattcatcattgagtattaaactatac
tgagtaggtatgttaagaaacaaatttatgtcttaaagccaaaatacata
tcgaattttagaagaaattactgaaaatcttggcctgataccatatctac
agacattaataattttggtcctgtgtagctttaattttgatattaaaatt
gaacttgtgtatttacctttcatgttcaatactttataggatgagttgaa
tggagcagtgtttgcttcggaatgttgtgcatcttgaatcacacttggct
ttagttgtattttttgtgataaagttttatctctttatttcgaatgtctg
tgacttctaggttgcccacatttctgtaatgaatccattcatacttgacc
ttcacttttgagtgatcatgtacttgcaattgaattctaaattgacagta
tcaggggttctcaattcatgatgaggtacaactcaataatccgttgtgaa
ttgaaaatacataagccaaaaatttatttaacctttcatcatttctcccg
ttcccttgctgcatttacttctataatttcccaaatgatttttttttttg
taaagtagaagtacaatatttgaatctagagtgcctggtatttagaagca
ttttattcagatgtttattctttcttgtcttaaaaggtaatagatagaga
atttgtctactgaaggcatcttgattcacctga

gaattcagaatagggcagaaacataaggaaatcgtttaattttgaatact
taggagaaacatgattatcaataattaaaattttaatacatactcaaatt
gaaataaatactctaaaaaatatcttactcaaagttatatttatggaaca
ctatatataatcaatagcacattttctggtatttttatttttatttttga
gattataattgaattactacatttctcccttattttcctccctctaaatc
cttcatatagacctccctgctctctttcaaattcatgctcgccttttctc
aatgctgtttgtgtgtatacacacacacacacacacacacacacacacac
acacacacacatacacacacacacacacacacacgtatatatgatcccaa
atagtcttaaatatattatatatttttatgtatattcctaaatataacat
ctttagtctacataatgcaatctgacatatatttataggatgcactccaa
atgcattattatttcactcaaagataaatctccatttttttctgaaatat
tacaaaatgggtatatacctattttcacagtggatgacatcatattaatt
gttcctaatcacactgtaagtaaacatataatatcatttaatataaggta
aaccaaagtagataatatgtggtgttgggagccgcgcccacattcgccgt
tacaagatggcgctgacagctgtgttctaagtggtaaacaaataatctgc
gcatgtgccgagggtggttcttcactccatgtgctctgccttccccgtga
cgtcaactcggccgatgggctgcagccaatcagggagtgacacgtcctag
gcgaaggagaattctctttaatagggacggggtttcgtttttctctcgct
cttgcttcttgctctctcttgcttcttgcactctggctcctgaagatgta
agcaataaagctttgccgcagagattctggtttgtgcgtctttcctggcc
ggtcgtgagacgcgtctatacatgtgattgtaaatgaattcacaagatga
ctctagatcaccagatctgtgaactcaaaccacagttacgtgtagagagt
ttccaggtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_80295001_80296188
seq2: B6Ng01-255N06.b_46_1228

seq1  GAATTCTCTTTAATAGGGACGGGGTTTCGTTTTCTCTCTCTCTTGCTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTAATAGGGACGGGGTTTCGTTTTCTCTCTCTCTTGCTGCT  50

seq1  CTCTCTCTTGCTTCTTGCTCTCTTGCTTCCTGCACCCTGGCTCCTGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTTGCTTCTTGCTCTCTTGCTTCCTGCACCCTGGCTCCTGAAGA  100

seq1  TGTAAGAAATAAAGCTTTGCCGCAGAAGATTCTGGTCTGTGGTGTTCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGAAATAAAGCTTTGCCGCAGAAGATTCTGGTCTGTGGTGTTCTTC  150

seq1  CTGGCCGGTCGTGAGAACGCGTCTAATAACATCGTGGTAAGCTAACAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCGGTCGTGAGAACGCGTCTAATAACATCGTGGTAAGCTAACAATA  200

seq1  GTTGTATTCAGCTATGACTTCTATAAACCATAACAACTAGGGTGGTACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTATTCAGCTATGACTTCTATAAACCATAACAACTAGGGTGGTACAT  250

seq1  TTTTCCCTGAGGGAATAATAGTGTAACTCATTCCCTGGCTTTTTGTTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCTGAGGGAATAATAGTGTAACTCATTCCCTGGCTTTTTGTTGAG  300

seq1  AATCAGTTTTGGGTCTCATGAAGATTTAAAATTTGTAGATTCTTCATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTTTTGGGTCTCATGAAGATTTAAAATTTGTAGATTCTTCATTTA  350

seq1  TATATTTAACTGTTTTTCTGCTGGTTTTACCATGACTATGATTATCCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTAACTGTTTTTCTGCTGGTTTTACCATGACTATGATTATCCTTA  400

seq1  CAATGATTAATATTTTCCTCTTTGAGTAAATTGCTTGCATTTTGTTCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGATTAATATTTTCCTCTTTGAGTAAATTGCTTGCATTTTGTTCTAC  450

seq1  ATTTTTGTGCTGTAACACTGAAATATTCATCATTGAGTATTAAACTATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTGCTGTAACACTGAAATATTCATCATTGAGTATTAAACTATAC  500

seq1  TGAGTAGGTATGTTAAGAAACAAATTTATGTCTTAAAGCCAAAATACATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAGGTATGTTAAGAAACAAATTTATGTCTTAAAGCCAAAATACATA  550

seq1  TCGAATTTTAGAAGAAATTACTGAAAATCTTGGCCTGATACCATATCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAATTTTAGAAGAAATTACTGAAAATCTTGGCCTGATACCATATCTAC  600

seq1  AGACATTAATAATTTTGGTCCTGTGTAGCTTTAATTTTGATATTAAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTAATAATTTTGGTCCTGTGTAGCTTTAATTTTGATATTAAAATT  650

seq1  GAACTTGTGTATTTACCTTTCATGTTCAATACTTTATAGGATGAGTTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGTGTATTTACCTTTCATGTTCAATACTTTATAGGATGAGTTGAA  700

seq1  TGGAGCAGTGTTTGCTTCGGAATGTTGTGCATCTTGAATCACACTTGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCAGTGTTTGCTTCGGAATGTTGTGCATCTTGAATCACACTTGGCT  750

seq1  TTAGTTGTATTTTTTGTGATAAAGTTTTATCTCTTTATTTCGAATGTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGTATTTTTTGTGATAAAGTTTTATCTCTTTATTTCGAATGTCTG  800

seq1  TGACTTCTAGGTTGCCCACATTTCTGTAATGAATCCATTCATACTTGACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCTAGGTTGCCCACATTTCTGTAATGAATCCATTCATACTTGACC  850

seq1  TTCACTTTTGAGTGATCATGTACTTGCAATTGAATTCTAAATTGACAGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTTTGAGTGATCATGTACTTGCAATTGAATTCTAAATTGACAGTA  900

seq1  TCAGGGGTTCTCAATTCATGATGAGGTACAACTCAATAATCCGTTGTGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGGTTCTCAATTCATGATGAGGTACAACTCAATAATCCGTTGTGAA  950

seq1  TTGAAAATACATAAGCCAAAAATTTATTTAACCTTTCATCATTTCCTCCC  1000
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTGAAAATACATAAGCCAAAAATTTATTTAACCTTTCATCATTT-CTCCC  999

seq1  GTTCCCTTGCTGCATTTACTTCTATAATTTCCCAAATGATTTTTTTTTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTTGCTGCATTTACTTCTATAATTTCCCAAATGATTTTTTTTTTT  1049

seq1  GTAAAGTAGAAGTACAATATTTGAATCTAGAAGGTGCCTGGGTATTTTAG  1100
      |||||||||||||||||||||||||||||||  |||||| |||| |||||
seq2  GTAAAGTAGAAGTACAATATTTGAATCTAGA--GTGCCT-GGTA-TTTAG  1095

seq1  AAGCATTTTATCCAGATGTTTA-TCTTTCTTTTGTCTTAAAAGGTAATAG  1149
      ||||||||||| |||||||||| ||||||  |||||||||||||||||||
seq2  AAGCATTTTATTCAGATGTTTATTCTTTC--TTGTCTTAAAAGGTAATAG  1143

seq1  -TAGAGAA-TTGTCTACTTGAAGGCATCTTGAATCACCTGA  1188
       ||||||| |||||||| |||||||||||||| ||||||||
seq2  ATAGAGAATTTGTCTAC-TGAAGGCATCTTGATTCACCTGA  1183


seq1: chr16_80420285_80421408
seq2: B6Ng01-255N06.g_69_1178 (reverse)

seq1  ACACCTGAAAAACTCTCTACACGTAACTGTGGTTTTGAGGTCACAGATTC  50
      |||||||  ||||||||||||||||||||||| |||||| ||||||||  
seq2  ACACCTG-GAAACTCTCTACACGTAACTGTGG-TTTGAGTTCACAGAT--  46

seq1  TTGGTGATTCCTAAGAAGTCATCTTTGTG-ATTCATTTACAATCCACATT  99
       |||||||  |||   ||||||| ||||| ||||||||||||| |||| |
seq2  CTGGTGAT--CTA--GAGTCATC-TTGTGAATTCATTTACAAT-CACA-T  89

seq1  GTTATTAGACGCGTTCTCACGACCGGCCAGGAAAGACGCAACAAACCAGA  149
      ||   |||||||| ||||||||||||||||||||||||| ||||||||||
seq2  GT--ATAGACGCG-TCTCACGACCGGCCAGGAAAGACGC-ACAAACCAGA  135

seq1  ATCTTCTGCGGCAAAGCTTTATTGCTTACATCTTCAGGAGCCAGAGTGCA  199
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATC-TCTGCGGCAAAGCTTTATTGCTTACATCTTCAGGAGCCAGAGTGCA  184

seq1  AGAAGCAAGAGAGAGCAAGAAGCAAGAGCGAGAG-AAAACGAAACCCCGT  248
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGAAGCAAGAGAGAGCAAGAAGCAAGAGCGAGAGAAAAACGAAACCCCGT  234

seq1  CCCTATTAAAGAGAATTCTCCTTCGCCTAGGACGTGTCACTCCCTGATTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATTAAAGAGAATTCTCCTTCGCCTAGGACGTGTCACTCCCTGATTG  284

seq1  GCTGCAGCCCATCGGCCGAGTTGACGTCACGGGGAAGGCAGAGCACATGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGCCCATCGGCCGAGTTGACGTCACGGGGAAGGCAGAGCACATGG  334

seq1  AGTGAAGAACCACCCTCGGCACATGCGCAGATTATTTGTTTACCACTTAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGAACCACCCTCGGCACATGCGCAGATTATTTGTTTACCACTTAG  384

seq1  AACACAGCTGTCAGCGCCATCTTGTAACGGCGAATGTGGGCGCGGCTCCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGCTGTCAGCGCCATCTTGTAACGGCGAATGTGGGCGCGGCTCCC  434

seq1  AACACCACATATTATCTACTTTGGTTTACCTTATATTAAATGATATTATA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCACATATTATCTACTTTGGTTTACCTTATATTAAATGATATTATA  484

seq1  TGTTTACTTACAGTGTGATTAGGAACAATTAATATGATGTCATCCACTGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACTTACAGTGTGATTAGGAACAATTAATATGATGTCATCCACTGT  534

seq1  GAAAATAGGTATATACCCATTTTGTAATATTTCAGAAAAAAATGGAGATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAGGTATATACCCATTTTGTAATATTTCAGAAAAAAATGGAGATT  584

seq1  TATCTTTGAGTGAAATAATAATGCATTTGGAGTGCATCCTATAAATATAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTGAGTGAAATAATAATGCATTTGGAGTGCATCCTATAAATATAT  634

seq1  GTCAGATTGCATTATGTAGACTAAAGATGTTATATTTAGGAATATACATA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGATTGCATTATGTAGACTAAAGATGTTATATTTAGGAATATACATA  684

seq1  AAAATATATAATATATTTAAGACTATTTGGGATCATATATACGTGTGTGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATATAATATATTTAAGACTATTTGGGATCATATATACGTGTGTGT  734

seq1  GTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  784

seq1  GTGTGTGTATACACACAAACAGCATTGAGAAAAGGCGAGCATGAATTTGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTATACACACAAACAGCATTGAGAAAAGGCGAGCATGAATTTGA  834

seq1  AAGAGAGCAGGGAGGTCTATATGAAGGATTTAGAGGGAGGAAAATAAGGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGCAGGGAGGTCTATATGAAGGATTTAGAGGGAGGAAAATAAGGG  884

seq1  AGAAATGTAGTAATTCAATTATAATCTCAAAAATAAAAATAAAAATACCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGTAGTAATTCAATTATAATCTCAAAAATAAAAATAAAAATACCA  934

seq1  GAAAATGTGCTATTGATTATATATAGTGTTCCATAAATATAACTTTGAGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTGCTATTGATTATATATAGTGTTCCATAAATATAACTTTGAGT  984

seq1  AAGATATTTTTTAGAGTATTTATTTCAATTTGAGTATGTATTAAAATTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTTTTTAGAGTATTTATTTCAATTTGAGTATGTATTAAAATTTT  1034

seq1  AATTATTGATAATCATGTTTCTCCTAAGTATTCAAAATTAAACGATTTCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTGATAATCATGTTTCTCCTAAGTATTCAAAATTAAACGATTTCC  1084

seq1  TTATGTTTCTGCCCTATTCTGAATTC  1124
      ||||||||||||||||||||||||||
seq2  TTATGTTTCTGCCCTATTCTGAATTC  1110


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