BAC Information

Click to search

BAC

Clone NameB6Ng01-255N09
Chromosome16 (Build37)
Map Location 68,711,422 - 68,712,642
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626609
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255N09.bB6Ng01-255N09.g
ACCGA061946GA061947
length1,2071,180
definitionB6Ng01-255N09.b B6Ng01-255N09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatgactaaaaataaaacaccaagaccactttctacagttatttt
cctttccatttgaatgagattgcatctctcaactatcagcagagaatctt
aatttgcaatagcttatgattactaaaggaattcacagttggtgaatgca
taagagactttggagtactctgctccaaatgaggcccttatataacattc
ctgatccacaaggatcagggattgccacggaaaagaaagtgaaaagattg
caagatttaaaggtagtatatttgtgtagtaaaacactatatttaagaca
tgatagaattgtttcacacataaactcaaaactgtgtctgaatgcacaag
acatttggaagatgaagccagacacaataccaaagtggagagcgaaaaga
ctcatgaaactgaaccccaagctgaggacattctgtcaactgatgtttgc
tgagggaagaaagaattttttttttctttttttggttctcagagaggagt
ccctgaaagactacctgtgttcaattaatcaattttatagtaaaatacgt
tcaagtaggtctaaatgaacttaatggttgtttgttggtttatttgtttg
ttttgttttatagacaacctgaagttgggataggaaaaggttaggtgata
tgggaagagttggagacgattcaatgagtggtgtactttatcaaaaatat
aagcatgcatgtaattctccattatatgttttacagctgaaaaaataaaa
tatgacacagcagagaattcaaaacaaggcaatttaaaatttaagaataa
tagataggagaaaaagacagaaaactgaaattattgatattaaattaaac
aaaataactcagcaacaaaattaataatataaattatttgataagatata
tttatgtaaaagtggatcatttatcatattttatgattttgtgatgttga
atttagaaattatatgcaaaacaatattatagagcaattagaagtaaaaa
atacacatttataaaataaagtatgtagtacattaacatttgttggtcag
tgtaaatgcatctttttataaatgttctgggagcttattttactgattta
tgtgaagacaaagtcccagctagataacttctttgcaccaaataaacctc
aggttcgtgtggtcataggattccattgaaaccaacaataacccagcgtc
tattgcg

gaattctcacctgaggaatattgaatggcagagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
ttcacttcactccagtcagaatggctaagatcaaaaactcaggtgacagc
agatgctggcgaggatgtggagaaagagaaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatcctgcaatacctctcctaggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcagccttgtttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gaatactactcagctattaaaaaatgaatttatgaaattcctaggcaaat
ggatggacctggaggatatcatcctgagtgaggtaacccaatcacaaaga
aactcgcacaatatgtactcactgataagtggatattagcccagaaactt
aggatacccaagatataagatacaatttgccaaacacatgaaattcaaga
agaacgaagaccaaagtgtggacactttaccctttcttagaaatgggaac
aaaacacccatggaagcagttacagagacaaaagttggagctgggacgaa
aggatggaccatctagtgattgccatatgcagggatccatcccataatca
gtttccaaatgctgacaccattgcgtacactagcaagattttgctgaaag
gacccagatatagctctctcttgtgagactatgccggggcctagcaaata
cagaagtggatgatcacagtcagctattggatgggtcacaccggccccca
atggaggagctagagaaagtaccccaagagctaaagggatctgcaaccct
ataggtggaacacatatgactaccagtaccccgagctcttgtcctctagc
tgcaattgtatcaaaagaatgctagttgtcatcactgaagaagagccatg
tcttgccacttaatgccccagtaagtaactcagccaacgtaatggctgct
atggattggaacacatctaaccataatact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_68711422_68712642
seq2: B6Ng01-255N09.b_47_1252

seq1  GAATTCATGACTAAAAATAAAACACCAAGACCACTTTCTACAGTTATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGACTAAAAATAAAACACCAAGACCACTTTCTACAGTTATTTT  50

seq1  CCTTTCCATTTGAATGAGATTGCATCTCTCAACTATCAGCAGAGAATCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCATTTGAATGAGATTGCATCTCTCAACTATCAGCAGAGAATCTT  100

seq1  AATTTGCAATAGCTTATGATTACTAAAGGAATTCACAGTTGGTGAATGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCAATAGCTTATGATTACTAAAGGAATTCACAGTTGGTGAATGCA  150

seq1  TAAGAGACTTTGGAGTACTCTGCTCCAAATGAGGCCCTTATATAACATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGACTTTGGAGTACTCTGCTCCAAATGAGGCCCTTATATAACATTC  200

seq1  CTGATCCACAAGGATCAGGGATTGCCACGGAAAAGAAAGTGAAAAGATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCCACAAGGATCAGGGATTGCCACGGAAAAGAAAGTGAAAAGATTG  250

seq1  CAAGATTTAAAGGTAGTATATTTGTGTAGTAAAACACTATATTTAAGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTTAAAGGTAGTATATTTGTGTAGTAAAACACTATATTTAAGACA  300

seq1  TGATAGAATTGTTTCACACATAAACTCAAAACTGTGTCTGAATGCACAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGAATTGTTTCACACATAAACTCAAAACTGTGTCTGAATGCACAAG  350

seq1  ACATTTGGAAGATGAAGCCAGACACAATACCAAAGTGGAGAGCGAAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGGAAGATGAAGCCAGACACAATACCAAAGTGGAGAGCGAAAAGA  400

seq1  CTCATGAAACTGAACCCCAAGCTGAGGACATTCTGTCAACTGATGTTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGAAACTGAACCCCAAGCTGAGGACATTCTGTCAACTGATGTTTGC  450

seq1  TGAGGGAAGAAAGAATTTTTTTTTTCTTTTTTTGGTTCTCAGAGAGGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGAAGAAAGAATTTTTTTTTTCTTTTTTTGGTTCTCAGAGAGGAGT  500

seq1  CCCTGAAAGACTACCTGTGTTCAATTAATCAATTTTATAGTAAAATACGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAAAGACTACCTGTGTTCAATTAATCAATTTTATAGTAAAATACGT  550

seq1  TCAAGTAGGTCTAAATGAACTTAATGGTTGTTTGTTGGTTTATTTGTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTAGGTCTAAATGAACTTAATGGTTGTTTGTTGGTTTATTTGTTTG  600

seq1  TTTTGTTTTATAGACAACCTGAAGTTGGGATAGGAAAAGGTTAGGTGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTATAGACAACCTGAAGTTGGGATAGGAAAAGGTTAGGTGATA  650

seq1  TGGGAAGAGTTGGAGACGATTCAATGAGTGGTGTACTTTATCAAAAATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGAGTTGGAGACGATTCAATGAGTGGTGTACTTTATCAAAAATAT  700

seq1  AAGCATGCATGTAATTCTCCATTATATGTTTTACAGCTGAAAAAATAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGCATGTAATTCTCCATTATATGTTTTACAGCTGAAAAAATAAAA  750

seq1  TATGACACAGCAGAGAATTCAAAACAAGGCAATTTAAAATTTAAGAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACACAGCAGAGAATTCAAAACAAGGCAATTTAAAATTTAAGAATAA  800

seq1  TAGATAGGAGAAAAAGACAGAAAACTGAAATTATTGATATTAAATTAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGGAGAAAAAGACAGAAAACTGAAATTATTGATATTAAATTAAAC  850

seq1  AAAATAACTCAGCAACAAAATTAATAATATAAATTATTTGATAAGATATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAACTCAGCAACAAAATTAATAATATAAATTATTTGATAAGATATA  900

seq1  TTTATGTAAAAGTGGATCATTTATCATATTTTATGATTTTGTGATGTTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTAAAAGTGGATCATTTATCATATTTTATGATTTTGTGATGTTGA  950

seq1  ATTTAGAAATTATATGCAAAACAATATTAATAGAGCAATTAGAAGTAAAA  1000
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATTTAGAAATTATATGCAAAACAATATT-ATAGAGCAATTAGAAGTAAAA  999

seq1  AAATAACACATTTATAAAAATAAAGTATGTAGTAACCAATTACATTTGTT  1050
      ||   |||||||||| ||||||||||||||||||  || | |||||||||
seq2  AA--TACACATTTAT-AAAATAAAGTATGTAGTA--CATTAACATTTGTT  1044

seq1  GGTCAGTGTAAAATGCCAATC-TTTTATAAATGTTCCTGGAAGC-TATTG  1098
      ||||||||| ||||||  ||| ||||||||||||| |||| ||| |||| 
seq2  GGTCAGTGT-AAATGC--ATCTTTTTATAAATGTT-CTGGGAGCTTATTT  1090

seq1  TACTGAATTTAATGTGAAGACAAAGTCCCAGCTAGATAAC-TCTTGGCAC  1147
      ||||||  || ||||||||||||||||||||||||||||| |||| ||||
seq2  TACTGA--TTTATGTGAAGACAAAGTCCCAGCTAGATAACTTCTTTGCAC  1138

seq1  CAAATAAAACCTCCAGTGTTGGGTTGTTGGCCAAAGGGGATCCATAGAAA  1197
      ||||| |||||| ||| ||| |  || ||| || | ||  ||||| ||||
seq2  CAAAT-AAACCT-CAG-GTTCG--TG-TGGTCATA-GGATTCCATTGAAA  1181

seq1  CCAACAAATAACCAA--GGCTATTGC  1221
      ||||| ||||||| |  | |||||||
seq2  CCAAC-AATAACCCAGCGTCTATTGC  1206


| Home | SequenceCutter | Blast | Download |