BAC Information

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BAC

Clone NameB6Ng01-255P12
Chromosome16 (Build37)
Map Location 40,659,536 - 40,807,855
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667400
Downstream geneEG667450, Lsamp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255P12.bB6Ng01-255P12.g
ACCGA062048GA062049
length9771,068
definitionB6Ng01-255P12.b B6Ng01-255P12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,806,881 - 40,807,855)(40,659,536 - 40,660,316)
sequence
gaattctatctttgtaaattctatctttgtaaattgtatctttcttcact
tgatactcactaccaagtttaggagaatttaccaagataatgcaaagtct
tgggctcttgcctagagttggttttgctatgaactccaaatcttcagatt
ataaatatacttctcacgtttcaacagaggtacttctcttgacaatagat
ggagaccattacagaaaatcacaactgatgaagatgcaggtgatgcctat
cctggactgaaccatcttcaacatggctcctacacctaatgttcaagaaa
aattaggaaagatgggtaagagtggtggtaacacccagaagaaaaggatg
tctgctttgagactaatttcctaaccatttaagggaaactctacctaata
agttgcaacaacatggcactctaaacaagatttgagttatgctttgcttt
tgaaaatagagtgacttctatatttaatatgagaaagttctatgttcttc
actatcatgatactttattcttcctcttcagcagacatgtttgtgttgta
aaaatgttctcatttgacattatctggtcacttagtccaacacctagttg
catcgatgcatcttaacataggctatatagtgaacagtctctcaagagtc
gcaataattacttccataatctctccttttcctgtcttttgttttagaac
ctttattcacactcataatctcatgtctgtacgtctccgctccttcaagt
tctagaaaagcacgccatggttcagtctcatcaaaataatgacaacctaa
aagttagctttcttttcatgagtaaaactattctgttatgggatgtgagc
ccagttataaacttgggaacataatttgttcagataatgatacaacaaaa
tatttcattaatcaaaagcttactttcactttttttttttattttctggc
aggagaagaatgacttagtttgtgtgt

gaattctccctagcattttctataggtttatatatgtagataaatattgt
ttaaactagactctataatgaaatatcttattttcttcattcatgttgat
tcaaagctttgcagggtgtagaagtctgggatatcatctgtggatgctta
gagcctgtagcatatctatacaggcccttatggctttttgactctctatt
gagaagtcctttgcagcttttagtattttttggttgttttatttgtttat
tattttgattattatgtggcaaggttactttcttttctcatctagtctac
ttgatgttgttttacttcttagacttttatgggtatcttgttctttaggt
taggaaaattttcttctatgattctgttgaaaatattttctgggcctttg
agctggaattgctctccttctccaatttctattaatattaggttgttctt
ttcatagtgtcccagatttcctgtacatttggtgtcaagaggtttttgaa
tttaacatcttctttaaataatgtatctgtttctttctaacttatcttcg
gcacctgagatcatctcttctatcttttatattctgttggtgaagggttc
ctcttttattcctgattaaacttataaattgttcattttcagatttcctt
cactttgtttcctttttattctttttcctcttaattacttaattttcatt
atgtcctgattgcagcgtacactctcttaccttctctcagttcttccctc
tcacgtctcccgcttcatttgttccccccttttcctcaaaaaggttgaag
cctcccctagaatttttttctattttgattctatttctattttttttttt
tttcatacacacaatggagttttattcagcctcaaagaagacataaaggt
tttagtagctctctgttttctggcacatccttttccattttttttttttt
ttatgtcatttttattaggtatttgctcattacattgcatgctattacaa
gtccccataggccaccaatccctctctcctaccaacactcctttatggtc
tgggcgtcctgtactggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_40806881_40807855
seq2: B6Ng01-255P12.b_49_1025 (reverse)

seq1  ACACACAAACTAAGTCATTC-TCTCCTGCCAGAAAAT-AAAAAAAAAAGT  48
      |||||||||||||||||||| |||||||||||||||| ||||||||||||
seq2  ACACACAAACTAAGTCATTCTTCTCCTGCCAGAAAATAAAAAAAAAAAGT  50

seq1  GAAAGTAAGCTTTTGATTAATGAAATATTTTGTTGTATCATTATCTGAAC  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTAAGCTTTTGATTAATGAAATATTTTGTTGTATCATTATCTGAAC  100

seq1  AAATTATGTTCCCAAGTTTATAACTGGGCTCACATCCCATAACAGAATAG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATGTTCCCAAGTTTATAACTGGGCTCACATCCCATAACAGAATAG  150

seq1  TTTTACTCATGAAAAGAAAGCTAACTTTTAGGTTGTCATTATTTTGATGA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTCATGAAAAGAAAGCTAACTTTTAGGTTGTCATTATTTTGATGA  200

seq1  GACTGAACCATGGCGTGCTTTTCTAGAACTTGAAGGAGCGGAGACGTACA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAACCATGGCGTGCTTTTCTAGAACTTGAAGGAGCGGAGACGTACA  250

seq1  GACATGAGATTATGAGTGTGAATAAAGGTTCTAAAACAAAAGACAGGAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGAGATTATGAGTGTGAATAAAGGTTCTAAAACAAAAGACAGGAAA  300

seq1  AGGAGAGATTATGGAAGTAATTATTGCGACTCTTGAGAGACTGTTCACTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGATTATGGAAGTAATTATTGCGACTCTTGAGAGACTGTTCACTA  350

seq1  TATAGCCTATGTTAAGATGCATCGATGCAACTAGGTGTTGGACTAAGTGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCCTATGTTAAGATGCATCGATGCAACTAGGTGTTGGACTAAGTGA  400

seq1  CCAGATAATGTCAAATGAGAACATTTTTACAACACAAACATGTCTGCTGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATAATGTCAAATGAGAACATTTTTACAACACAAACATGTCTGCTGA  450

seq1  AGAGGAAGAATAAAGTATCATGATAGTGAAGAACATAGAACTTTCTCATA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAGAATAAAGTATCATGATAGTGAAGAACATAGAACTTTCTCATA  500

seq1  TTAAATATAGAAGTCACTCTATTTTCAAAAGCAAAGCATAACTCAAATCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATAGAAGTCACTCTATTTTCAAAAGCAAAGCATAACTCAAATCT  550

seq1  TGTTTAGAGTGCCATGTTGTTGCAACTTATTAGGTAGAGTTTCCCTTAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGAGTGCCATGTTGTTGCAACTTATTAGGTAGAGTTTCCCTTAAA  600

seq1  TGGTTAGGAAATTAGTCTCAAAGCAGACATCCTTTTCTTCTGGGTGTTAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAGGAAATTAGTCTCAAAGCAGACATCCTTTTCTTCTGGGTGTTAC  650

seq1  CACCACTCTTACCCATCTTTCCTAATTTTTCTTGAACATTAGGTGTAGGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTCTTACCCATCTTTCCTAATTTTTCTTGAACATTAGGTGTAGGA  700

seq1  GCCATGTTGAAGATGGTTCAGTCCAGGATAGGCATCACCTGCATCTTCAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTTGAAGATGGTTCAGTCCAGGATAGGCATCACCTGCATCTTCAT  750

seq1  CAGTTGTGATTTTCTGTAATGGTCTCCATCTATTGTCAAGAGAAGTACCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGTGATTTTCTGTAATGGTCTCCATCTATTGTCAAGAGAAGTACCT  800

seq1  CTGTTGAAACGTGAGAAGTATATTTATAATCTGAAGATTTGGAGTTCATA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGAAACGTGAGAAGTATATTTATAATCTGAAGATTTGGAGTTCATA  850

seq1  GCAAAACCAACTCTAGGCAAGAGCCCAAGACTTTGCATTATCTTGGTAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACCAACTCTAGGCAAGAGCCCAAGACTTTGCATTATCTTGGTAAA  900

seq1  TTCTCCTAAACTTGGTAGTGAGTATCAAGTGAAGAAAGATACAATTTACA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTAAACTTGGTAGTGAGTATCAAGTGAAGAAAGATACAATTTACA  950

seq1  AAGATAGAATTTACAAAGATAGAATTC  975
      |||||||||||||||||||||||||||
seq2  AAGATAGAATTTACAAAGATAGAATTC  977


seq1: chr16_40659536_40660316
seq2: B6Ng01-255P12.g_385_1138

seq1  CTTCTTAGACTTTTATGGGTATCTTGTTCTTTAGGTTAGGAAAATTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTAGACTTTTATGGGTATCTTGTTCTTTAGGTTAGGAAAATTTTCT  50

seq1  TCTATGATTCTGTTGAAAATATTTTCTGGGCCTTTGAGCTGGAATTGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGATTCTGTTGAAAATATTTTCTGGGCCTTTGAGCTGGAATTGCTC  100

seq1  TCCTTCTCCAATTTCTATTAATATTAGGTTGTTCTTTTCATAGTGTCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCCAATTTCTATTAATATTAGGTTGTTCTTTTCATAGTGTCCCA  150

seq1  GATTTCCTGTACATTTGGTGTCAAGAGGTTTTTGAATTTAACATCTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCTGTACATTTGGTGTCAAGAGGTTTTTGAATTTAACATCTTCTT  200

seq1  TAAATAATGTATCTGTTTCTTTCTAACTTATCTTCGGCACCTGAGATCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATGTATCTGTTTCTTTCTAACTTATCTTCGGCACCTGAGATCAT  250

seq1  CTCTTCTATCTTTTATATTCTGTTGGTGAAGGGTTCCTCTTTTATTCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTATCTTTTATATTCTGTTGGTGAAGGGTTCCTCTTTTATTCCTG  300

seq1  ATTAAACTTATAAATTGTTCATTTTCAGATTTCCTTCACTTTGTTTCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACTTATAAATTGTTCATTTTCAGATTTCCTTCACTTTGTTTCCTT  350

seq1  TTTATTCTTTTTCCTCTTAATTACTTAATTTTCATTATGTCCTGATTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTTTTTCCTCTTAATTACTTAATTTTCATTATGTCCTGATTGCA  400

seq1  GCGTACACTCTCTTACCTTCTCTCAGTTCTTCCCTCTCACGTCTCCCGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTACACTCTCTTACCTTCTCTCAGTTCTTCCCTCTCACGTCTCCCGCT  450

seq1  TCATTTGTTCCCCCCTTTTCCTCAAAAAGGTTGAAGCCTCCCCTAGAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGTTCCCCCCTTTTCCTCAAAAAGGTTGAAGCCTCCCCTAGAATT  500

seq1  TTTTTCTATTTTGATTCTATTTCTA-TTTTTTTTTTTTTCATACACACAA  549
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTTTTCTATTTTGATTCTATTTCTATTTTTTTTTTTTTTCATACACACAA  550

seq1  TGGAGTTTTATTCAGCCTCAAAGAAGACATAAAGGTTTTAGTAGCTCTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTTTATTCAGCCTCAAAGAAGACATAAAGGTTTTAGTAGCTCTCT  600

seq1  GTTTTCTGGCACCATCCTTTCCCATTTTTTTTTTTTTTTTTTTTTTTTTT  649
      ||||||||||| |||||||| |||||||||||||||||| | |       
seq2  GTTTTCTGGCA-CATCCTTTTCCATTTTTTTTTTTTTTTATGT-------  642

seq1  TTTCCATTTTTTATTAGGTATTTTGCTCATTTACATTTGCAATGCTATAC  699
          || ||||||||||||| |||||||| ||||| |||| |||||||  
seq2  ----CA-TTTTTATTAGGTA-TTTGCTCA-TTACA-TTGC-ATGCTAT--  681

seq1  CAAAAGTCCCCCATAGCCACCCACCCCCTCTCCCCTACCCACCCACTCCC  749
       | |||| |||||||| |  |||  ||||||| |||||| |  |||||| 
seq2  TACAAGT-CCCCATAGGCCACCAATCCCTCTCTCCTACCAA--CACTCC-  727

seq1  CTTTTATGGCCCTGGCGTTCCCCTGTACTGGG  781
        ||||||| |  |||||   |||||||||||
seq2  --TTTATGGTCTGGGCGT---CCTGTACTGGG  754


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