BAC Information

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BAC

Clone NameB6Ng01-258D07
Chromosome16 (Build37)
Map Location 90,166,715 - 90,304,766
singlet/doubletdoublet
Overlap geneLOC100040440, Sod1, Sfrs15
Upstream geneEG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik, Tiam1, LOC100040496, LOC640694
Downstream geneLOC545175, Hunk, 2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2, Olig1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258D07.bB6Ng01-258D07.g
ACCGA063703GA063704
length1,174529
definitionB6Ng01-258D07.b B6Ng01-258D07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,166,715 - 90,167,900)(90,304,233 - 90,304,766)
sequence
gaattcatttcacttcattgaaaccaacacttctcagatttgtttgacca
cagtaatatcgtttaatctagttctccgtactgaggcccccacatgagca
ctgtggaaaacactccagttgtgaggtttctggagccagaaggggcagta
gccatcattcacagctctctctcccctgaggtctgtcagcaaatccactc
tgcttggcctccacgatgacactggcctctttgtgccccctttgatgggg
gcagaggactgggagggacaggggacaacgtggctgaggctgcacaaacc
gaggagttccagaagatgggacatcaagtctcctggacacccctacaccc
aggcacagacaaacctttgtttaacctgatacgctccaatttctttcctc
ctcaccagcttctaacagatccagggagggggctttggtgtcaagtgctg
gagagggattccttagttaccgtggtggtagaacgtgtgactctcttaga
ttttatctaagatagacaatgtatcccacagaagttctgtcagaaccagg
agtagcatttaatcagaaccagggagtacccagaatgcttatctagcttt
tagttttgctaagaagaacaaagcttaatgcaaataaaataaaataaaat
aaaataaaatcctggagcagtgttttcctttctttccgaactggggcatt
ttgcataaacgcccagtgttgactccctctccctcctccagcttcaatgt
attagacaagtcactgtattctttctgtacctttactttctcacctgtaa
aatgggagagttgacagaaacaaagactcctctggaagtaagaaaatgcg
taaagggcaggggagctgacttagcagttgagtgattgattactcttctt
gcagaggactcgagtttggttcccagcatcgacctatgactttagctctg
gactcctcaggcatctgggcttatgtatgtgtgagagccgcactgcgagc
acacacacacacacacacacacacacactttaaaataaagtaaattctaa
aagaaagacaaggaatgtgtgaaaacgcattctgaaaactggagcctgac
agtgctgtaatccagtactgaaggcgtgagcaagattcaaggagggttag
tccagtagtcagctggctgcacaa
caggccactgagagaccttgtctcaaaaaaacaaaaacaaaaaacatata
tgtatatatatatatatatatatatatatatatatatatatatatatata
taatatattccaccatatatatatgtggagaatatatattttcccattat
atatatacagaaatatggaccctcagtgtatatttaatatatttatatat
atatagtgggaaatatatattgtatattatatatatgtgggtatactata
tataatatatttttccaccatatatatatatggaaaaatacccagggttg
acctctgaactccacacaagcacatatgaacacacacacataccaccgca
ataccaaagacttatctcttataactctagagactagaagtcctagttca
gggtggtggagcattcagttctgatgacagctggtttctaagaatatcta
cacatggtggaaaaggaatgagagtactccccaaggcccttttataggga
cacgcatatcattcacattcacaagggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_90166715_90167900
seq2: B6Ng01-258D07.b_43_1216

seq1  GAATTCATTTCACTTCATTGAAACCAACACTTCTCAGATTTGTTTGACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCACTTCATTGAAACCAACACTTCTCAGATTTGTTTGACCA  50

seq1  CAGTAATATCGTTTAATCTAGTTCTCCGTACTGAGGCCCCCACATGAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATATCGTTTAATCTAGTTCTCCGTACTGAGGCCCCCACATGAGCA  100

seq1  CTGTGGAAAACACTCCAGTTGTGAGGTTTCTGGAGCCAGAAGGGGCAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAAAACACTCCAGTTGTGAGGTTTCTGGAGCCAGAAGGGGCAGTA  150

seq1  GCCATCATTCACAGCTCTCTCTCCCCTGAGGTCTGTCAGCAAATCCACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCATTCACAGCTCTCTCTCCCCTGAGGTCTGTCAGCAAATCCACTC  200

seq1  TGCTTGGCCTCCACGATGACACTGGCCTCTTTGTGCCCCCTTTGATGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGCCTCCACGATGACACTGGCCTCTTTGTGCCCCCTTTGATGGGG  250

seq1  GCAGAGGACTGGGAGGGACAGGGGACAACGTGGCTGAGGCTGCACAAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGACTGGGAGGGACAGGGGACAACGTGGCTGAGGCTGCACAAACC  300

seq1  GAGGAGTTCCAGAAGATGGGACATCAAGTCTCCTGGACACCCCTACACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGTTCCAGAAGATGGGACATCAAGTCTCCTGGACACCCCTACACCC  350

seq1  AGGCACAGACAAACCTTTGTTTAACCTGATACGCTCCAATTTCTTTCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAGACAAACCTTTGTTTAACCTGATACGCTCCAATTTCTTTCCTC  400

seq1  CTCACCAGCTTCTAACAGATCCAGGGAGGGGGCTTTGGTGTCAAGTGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCAGCTTCTAACAGATCCAGGGAGGGGGCTTTGGTGTCAAGTGCTG  450

seq1  GAGAGGGATTCCTTAGTTACCGTGGTGGTAGAACGTGTGACTCTCTTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGATTCCTTAGTTACCGTGGTGGTAGAACGTGTGACTCTCTTAGA  500

seq1  TTTTATCTAAGATAGACAATGTATCCCACAGAAGTTCTGTCAGAACCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCTAAGATAGACAATGTATCCCACAGAAGTTCTGTCAGAACCAGG  550

seq1  AGTAGCATTTAATCAGAACCAGGGAGTACCCAGAATGCTTATCTAGCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCATTTAATCAGAACCAGGGAGTACCCAGAATGCTTATCTAGCTTT  600

seq1  TAGTTTTGCTAAGAAGAACAAAGCTTAATGCAAATAAAATAAAATAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTGCTAAGAAGAACAAAGCTTAATGCAAATAAAATAAAATAAAAT  650

seq1  AAAATAAAATCCTGGAGCAGTGTTTTCCTTTCTTTCCGAACTGGGGCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAATCCTGGAGCAGTGTTTTCCTTTCTTTCCGAACTGGGGCATT  700

seq1  TTGCATAAACGCCCAGTGTTGACTCCCTCTCCCTCCTCCAGCTTCAATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATAAACGCCCAGTGTTGACTCCCTCTCCCTCCTCCAGCTTCAATGT  750

seq1  ATTAGACAAGTCACTGTATTCTTTCTGTACCTTTACTTTCTCACCTGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGACAAGTCACTGTATTCTTTCTGTACCTTTACTTTCTCACCTGTAA  800

seq1  AATGGGAGAGTTGACAGAAACAAAGACTCCTCTGGAAGTAAGAAAATGCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAGAGTTGACAGAAACAAAGACTCCTCTGGAAGTAAGAAAATGCG  850

seq1  TAAAGGGCAGGGGAGCTGACTTAGCAGTTGAGTGATTGATTACTCTTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGCAGGGGAGCTGACTTAGCAGTTGAGTGATTGATTACTCTTCTT  900

seq1  GCAGAGGACTCGAGTTTGGTTCCCAGCATCGACCTATGACTTTAGCTCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGACTCGAGTTTGGTTCCCAGCATCGACCTATGACTTTAGCTCTG  950

seq1  GACTCCTCAGGCATCTGGGCTTATGTATGTGTGAGAGGCCGCACTGCGAG  1000
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GACTCCTCAGGCATCTGGGCTTATGTATGTGTGAGA-GCCGCACTGCGAG  999

seq1  CACACACACACACACACACACACACACACTTTAAAATAAAAGTAAATTCT  1050
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CACACACACACACACACACACACACACACTTTAAAAT-AAAGTAAATTCT  1048

seq1  AAAAGAAAGACAAAGAAAATGTGTGAAAACGCCATCTGAAAACTGAGCCC  1100
      ||||||||||||| |  |||||||||||||||  |||||||||||   ||
seq2  AAAAGAAAGACAAGG--AATGTGTGAAAACGCATTCTGAAAACTGGAGCC  1096

seq1  TGACAGTGCTGTAATCCCAGTACTTGAGGCGTGAAAGCAAAAGATTC-AG  1149
      ||||||||||||||| ||||||||  |||||||  |||  ||||||| ||
seq2  TGACAGTGCTGTAAT-CCAGTACTGAAGGCGTG--AGC--AAGATTCAAG  1141

seq1  GAGGTGTTAGTCCAGTAGTCCAGCCTGGGCTGCACAA  1186
      |||| |||||||||||||| ||||   ||||||||||
seq2  GAGG-GTTAGTCCAGTAGT-CAGC--TGGCTGCACAA  1174

seq1: chr16_90304233_90304766
seq2: B6Ng01-258D07.g_67_600 (reverse)

seq1  GCCCTTGTGAATGTGAATGATATGCGTGTCCCTATAAAAGGGCCTTGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGTGAATGTGAATGATATGCGTGTCCCTATAAAAGGGCCTTGGGG  50

seq1  AGTACTCTCATTCCTCTTCCACCATGTGTAGATATTCTTAGAAGCCAGCT  100
      ||||||||||||||| ||||||||||||||||||||||||||| ||||||
seq2  AGTACTCTCATTCCTTTTCCACCATGTGTAGATATTCTTAGAAACCAGCT  100

seq1  GTCATCAGAACTGAATGCTCCACCACCCTGAACTAGGACTTCTAGTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCAGAACTGAATGCTCCACCACCCTGAACTAGGACTTCTAGTCTCT  150

seq1  AGAGTTATAAGAGATAAGTCTTTGGTATTGCGGTGGTATGTGTGTGTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTATAAGAGATAAGTCTTTGGTATTGCGGTGGTATGTGTGTGTGTT  200

seq1  CATATGTGCTTGTGTGGAGTTCAGAGGTCAACCCTGGGTATTTTTCCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTGCTTGTGTGGAGTTCAGAGGTCAACCCTGGGTATTTTTCCATA  250

seq1  TATATATATGGTGGAAAAATATATTATATATAGTATACACACATATATAT  300
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TATATATATGGTGGAAAAATATATTATATATAGTATACCCACATATATAT  300

seq1  AATATACAATATATATTTCCCACTATATATATATAAATATATTAAATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACAATATATATTTCCCACTATATATATATAAATATATTAAATATA  350

seq1  CACTGAGGGTCCATATTTCTGTATATATATAATGGGAAAATATATATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGGGTCCATATTTCTGTATATATATAATGGGAAAATATATATTCT  400

seq1  CCACATATATATATGGTGGAATATATTATATATATATATATATATATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATATATATATGGTGGAATATATTATATATATATATATATATATATA  450

seq1  TATATATATATATATATATATATATACATATATGTTTTTTGTTTTTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATACATATATGTTTTTTGTTTTTGTTT  500

seq1  TTTTGAGACAAGGTCTCTCAGTGGCCTGGAATTC  534
      ||||||||||||||||||||||||||||||||||
seq2  TTTTGAGACAAGGTCTCTCAGTGGCCTGGAATTC  534