BAC Information

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BAC

Clone NameB6Ng01-258L13
Chromosome16 (Build37)18 (Build37)
Map Location 72,336,527 - 72,337,48688,025,342 - 88,025,532
singlet/doubletsingletsinglet
Overlap genenone
Upstream genenone
Downstream geneRobo1, LOC100039310, LOC100039318, LOC100039326
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258L13.bB6Ng01-258L13.g
ACCGA064088GA064089
length961395
definitionB6Ng01-258L13.b B6Ng01-258L13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(72,336,527 - 72,337,486)(88,025,342 - 88,025,532)
sequence
gaattcctagtcttttgttcatgtaattatgaacatgactataaaaatta
tgtaagtataatttctggaacctcaacccaaatatatttgttcaatgcaa
agtatgctatattataccctatttaagaacaacaacaacaacaaaaaaaa
ggctttgacgagtaagtattaaacagagcatccccaatcatactcagttt
tattgattagccatactcctcatctcctccatgttgtggtatttaaaatc
tctttagtcttaagtgactttacatggtatctatggtgtatatgatctct
tccttaatattccatgaggttaagaaagaagtctagaaactaattgtaaa
tgtagattctcattttttaaaaaagtaaagtttaaggagatcaaggacag
agggagacaactgaagcataacacattaaatttgtcattagctatatagt
gttgacataaacaataaagtatgaatatgtctatgtccgtcataagataa
cctgccagtattttcttgtcattattttgttgttatcaataccttgttat
aagtagataagattttttatctacttatatatactatattcagtccatct
gattttaacaaaagtattgtctgtacattaaatcagtaggtagttcctga
aataagtatctaacttggtaagtaatgcagataggatcaaactgttactt
gagcattttctactcttttaaacagtttgattgctacaaatcaaagagat
agagccatttgatttaagggatgtttgctggccttcctgctcatcttact
gatgaaatgtagcaaagaatggaaaaaaatgaaaagaacgtaaaacgtga
tgagtgaagaaaatatctattaaaaattgagaaaaaaaaagcaaacttta
catgccccagtacaggggagcgccagggccaagaagtgggagtgggtggg
gtaaggggaga

tttccatttccgggtacagttgtcttttgttcccaggacaatcacagtgt
tcaacaactttttttttttaatgtatgcaatatggtagggggtttcttaa
aataggcttccagaagggagaaggggagtcactaaatagtgaaacaaccc
ataggaggaacatcaatatgaactaaccagtacccccagagctccttgga
actaaaccttcaatcaaagaaaacacacggtgggacttgtggctctagct
gtacatgtagctgaggatggtcttgttggtcatcaatgggaggagaggcc
ctaggtcctatgaaggctctatgccccagtataggggaatgccaggtctg
ggaatgggagtgggtgggttggggagcagcgggagggaggagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_72336527_72337486
seq2: B6Ng01-258L13.b_49_1009

seq1  GAATTCCTAGTCTTTTGTTCATGTAATTATGAACATGACTATAAAAATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGTCTTTTGTTCATGTAATTATGAACATGACTATAAAAATTA  50

seq1  TGTAAGTATAATTTCTGGAACCTCAACCCAAATATATTTGTTCAATGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTATAATTTCTGGAACCTCAACCCAAATATATTTGTTCAATGCAA  100

seq1  AGTATGCTATATTATACCCTATTTAAGAACAACAACAACAACAAAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGCTATATTATACCCTATTTAAGAACAACAACAACAACAAAAAAAA  150

seq1  GGCTTTGACGAGTAAGTATTAAACAGAGCATCCCCAATCATACTCAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGACGAGTAAGTATTAAACAGAGCATCCCCAATCATACTCAGTTT  200

seq1  TATTGATTAGCCATACTCCTCATCTCCTCCATGTTGTGGTATTTAAAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATTAGCCATACTCCTCATCTCCTCCATGTTGTGGTATTTAAAATC  250

seq1  TCTTTAGTCTTAAGTGACTTTACATGGTATCTATGGTGTATATGATCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGTCTTAAGTGACTTTACATGGTATCTATGGTGTATATGATCTCT  300

seq1  TCCTTAATATTCCATGAGGTTAAGAAAGAAGTCTAGAAACTAATTGTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAATATTCCATGAGGTTAAGAAAGAAGTCTAGAAACTAATTGTAAA  350

seq1  TGTAGATTCTCATTTTTTAAAAAAGTAAAGTTTAAGGAGATCAAGGACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATTCTCATTTTTTAAAAAAGTAAAGTTTAAGGAGATCAAGGACAG  400

seq1  AGGGAGACAACTGAAGCATAACACATTAAATTTGTCATTAGCTATATAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGACAACTGAAGCATAACACATTAAATTTGTCATTAGCTATATAGT  450

seq1  GTTGACATAAACAATAAAGTATGAATATGTCTATGTCCGTCATAAGATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACATAAACAATAAAGTATGAATATGTCTATGTCCGTCATAAGATAA  500

seq1  CCTGCCAGTATTTTCTTGTCATTATTTTGTTGTTATCAATACCTTGTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCAGTATTTTCTTGTCATTATTTTGTTGTTATCAATACCTTGTTAT  550

seq1  AAGTAGATAAGATTTTTTATCTACTTATATATACTATATTCAGTCCATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGATAAGATTTTTTATCTACTTATATATACTATATTCAGTCCATCT  600

seq1  GATTTTAACAAAAGTATTGTCTGTACATTAAATCAGTAGGTAGTTCCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTAACAAAAGTATTGTCTGTACATTAAATCAGTAGGTAGTTCCTGA  650

seq1  AATAAGTATCTAACTTGGTAAGTAATGCAGATAGGATCAAACTGTTACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTATCTAACTTGGTAAGTAATGCAGATAGGATCAAACTGTTACTT  700

seq1  GAGCATTTTCTACTCTTTTAAACAGTTTGATTGCTACAAATCAAAGAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATTTTCTACTCTTTTAAACAGTTTGATTGCTACAAATCAAAGAGAT  750

seq1  AGAGCCATTTGATTTAAGGGATGTTTGCTGGCCTTCCTGCTCATCTTACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCATTTGATTTAAGGGATGTTTGCTGGCCTTCCTGCTCATCTTACT  800

seq1  GATGAAATGTAGCAAAGAATGGAAAAAAATGAAAAGAACGTAAAACGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAATGTAGCAAAGAATGGAAAAAAATGAAAAGAACGTAAAACGTGA  850

seq1  TGAGTGAAGAAAATATCTATTAAAAATTGAGAAAAAAAAAAGCAAACTTT  900
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGAGTGAAGAAAATATCTATTAAAAATTGAG-AAAAAAAAAGCAAACTTT  899

seq1  ACATGCCCCAGTACAGGGGAGCGCCAGGGCCAAGAAGTGGGAGTGGGTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCCCCAGTACAGGGGAGCGCCAGGGCCAAGAAGTGGGAGTGGGTGG  949

seq1  G--TAGGGGAGA  960
      |   ||||||||
seq2  GGTAAGGGGAGA  961


seq1: chr18_88025342_88025532
seq2: B6Ng01-258L13.g_237_460

seq1  CAATATGAACTAACCAGTACCCCC----CCCC-----------CC-----  30
      ||||||||||||||||||||||||    | ||           ||     
seq2  CAATATGAACTAACCAGTACCCCCAGAGCTCCTTGGAACTAAACCTTCAA  50

seq1  CCAGAG----------------CTCATGTCTCTAGCTGCATGTGTATCAG  64
       || ||                ||  || ||||||||| |  |||| | |
seq2  TCAAAGAAAACACACGGTGGGACTTGTGGCTCTAGCTGTACATGTAGCTG  100

seq1  AAGATGGCTTGGTAGGCCATTGGTGGAGGGAGAGGCCCATTAGTCTTGCA  114
      | |||||  | || || |||   |||  |||||||||| |  ||| |   
seq2  AGGATGGTCTTGTTGGTCATCAATGGGAGGAGAGGCCC-TAGGTCCTATG  149

seq1  AACTTTATATGCCTCAGTACAGGGGAAAGCCAGGGCCAAGAATTGGGAGT  164
      ||   | |||||| ||||| ||||||| |||||| |   ||| |||||||
seq2  AAGGCTCTATGCCCCAGTATAGGGGAATGCCAGGTCTGGGAA-TGGGAGT  198

seq1  GGGTGGGTAGGGGAGGGGTGGGGAGGG  191
      |||||||| ||||||  |  |||||||
seq2  GGGTGGGTTGGGGAGCAG-CGGGAGGG  224


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