BAC Information

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BAC

Clone NameB6Ng01-260A10
Chromosome16 (Build37)
Map Location 40,521,434 - 40,696,134
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667400
Downstream geneEG667450, Lsamp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260A10.bB6Ng01-260A10.g
ACCGA065056GA065057
length1,1941,146
definitionB6Ng01-260A10.b B6Ng01-260A10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,521,434 - 40,522,646)(40,694,962 - 40,696,134)
sequence
gaattctcatccacttttgctcaacagtattgtacattctgaaagaaaag
aaatgtggaaacttcaagggaggacaggaaatttgttacaaaaataggat
gttttgtccttgttagtcaattgttcagttcaccctcacaaagagtttca
aataggtctgagtcactttggttgtggttgttctgtaattacacagacat
tatccttggctcagcctttgcatctgggactcacttttatgattcagtca
gtatcccagctttccaatgtctcttgtttacaaaaccactgtgtgatata
agttaataaggaaacatagtggatactaaggtacacttactttcttaatc
tttccagtgaatattttcacatggtttacgatactactggaaaaaggaag
caactgtaaacaaagaaccgggtggtttagtatccaattggagactactt
tcaatgaactaactcccccccgacttcagccaaattagagcccagcatct
acagagagaatctgtgcctatggctagagcacaaccagtttattaaaaat
gtaaatcttattccattcatcatcattaactccagcaattggccaacaca
tttaaatgaagcaaattttaaagatttcgggagcaactagcagttcttca
agacaccaagaataatatctgcagtttaagaaaatttgtgtcaacccaat
ttagagggaataaaaatgtcatgaatcagatcatttttttccacagtaat
tttgtgtcacactaaacccaaagacttgtagttgctaaatggaggaaatg
aattaagatgtatcaataaatgaaagtatctcaatcatgtcaatgagccc
ttcacacagattggaatttcaatgagatcccactttcaatgtacaaaata
gactctaagtaaccccctcttcatatttattcttgggttggctaactgct
ggactctttcttgcatgtgaacagagtgagtttcacgcatttatttcgca
gagatttccattttgactttctctcccctgctcggtaatgggtacttaat
aagtgggagcatttgcttatacttaatttcttaaagtgagtctattcctc
tcttatttcagtcaaagacagcatataggtctaataactcaatgaatttg
gattgctgatagttatgaatctcatccacttgaaaaatggcaag

gaattccccttcactgggacatagaaccttcacagggcaaagggtctctc
ttcccatcaatgttcaactaggccatgctctgctacatatgcatctggag
ccatgaggtttagtccctgaaagcagtggggatactggttagttcatatt
attgttcctcctatgaggctgcaaacccctttcatataggacatggtcct
gtgtgtagtgtttctttctacacagggacctacaatatgtgtagaaattt
gtttggtgtgacagcacaggagagtgcggcctagctgtagagtgagttgt
gttggaagaaaatatggactatgttatctgactatgcttgtccttgcccc
tatactctaagtggtatttccaatgtttataatgatttttttacattgtt
ttcccaccaatgtctttgactcctcttgtctttctgaattgtcttccttc
cattgtgacaaagaaccacatggttctgaaaagagacaatacataacttc
acagtcttccgctggctacttttgcttctggttttaccattccttaacta
attcaaatcacagaattttcggttcttcttcaataattacaaacagtctc
tgttagtctcataatgctgtcctttgttaaagaaaaactctgtatattag
tttttaagtacaataaacactaactgtataacaattataacaaataaaat
atgcaatagcctatagtaggtaagagtttaaggcagtgattcagaaatga
cctcattcttcacaaacggaccgtactctcaaattgtatccattcttgaa
ctccctggttccatagactcagaaactcagtaggacatcatgaggaactt
ctttcttagagtcatttcatgagaatgtgattcataatcacccttagcat
ctactactttgctccaacctttcaatcctgtgatttgcctatataatacc
cacagcaataagcatcccagtggcgtgggaagtctaaaacaacaaacaac
aatgacgaaaaacagcaaacaacaaacaaaacccaaaactgtagtagttc
tctgggaaactggtgtatagttatgtatgccacggatgagagagattatt
actttttaaataaaataaatttgccaggactactgatgctcagcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_40521434_40522646
seq2: B6Ng01-260A10.b_46_1239

seq1  GAATTCTCATCCACTTTTGCTCAACAGTATTGTACATTCTGAAAGAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATCCACTTTTGCTCAACAGTATTGTACATTCTGAAAGAAAAG  50

seq1  AAATGTGGAAACTTCAAGGGAGGACAGGAAATTTGTTACAAAAATAGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGGAAACTTCAAGGGAGGACAGGAAATTTGTTACAAAAATAGGAT  100

seq1  GTTTTGTCCTTGTTAGTCAATTGTTCAGTTCACCCTCACAAAGAGTTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTCCTTGTTAGTCAATTGTTCAGTTCACCCTCACAAAGAGTTTCA  150

seq1  AATAGGTCTGAGTCACTTTGGTTGTGGTTGTTCTGTAATTACACAGACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTCTGAGTCACTTTGGTTGTGGTTGTTCTGTAATTACACAGACAT  200

seq1  TATCCTTGGCTCAGCCTTTGCATCTGGGACTCACTTTTATGATTCAGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTGGCTCAGCCTTTGCATCTGGGACTCACTTTTATGATTCAGTCA  250

seq1  GTATCCCAGCTTTCCAATGTCTCTTGTTTACAAAACCACTGTGTGATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCCAGCTTTCCAATGTCTCTTGTTTACAAAACCACTGTGTGATATA  300

seq1  AGTTAATAAGGAAACATAGTGGATACTAAGGTACACTTACTTTCTTAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATAAGGAAACATAGTGGATACTAAGGTACACTTACTTTCTTAATC  350

seq1  TTTCCAGTGAATATTTTCACATGGTTTACGATACTACTGGAAAAAGGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGTGAATATTTTCACATGGTTTACGATACTACTGGAAAAAGGAAG  400

seq1  CAACTGTAAACAAAGAACCGGGTGGTTTAGTATCCAATTGGAGACTACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTAAACAAAGAACCGGGTGGTTTAGTATCCAATTGGAGACTACTT  450

seq1  TCAATGAACTAACTCCCCCCCGACTTCAGCCAAATTAGAGCCCAGCATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGAACTAACTCCCCCCCGACTTCAGCCAAATTAGAGCCCAGCATCT  500

seq1  ACAGAGAGAATCTGTGCCTATGGCTAGAGCACAACCAGTTTATTAAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGAATCTGTGCCTATGGCTAGAGCACAACCAGTTTATTAAAAAT  550

seq1  GTAAATCTTATTCCATTCATCATCATTAACTCCAGCAATTGGCCAACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATCTTATTCCATTCATCATCATTAACTCCAGCAATTGGCCAACACA  600

seq1  TTTAAATGAAGCAAATTTTAAAGATTTCGGGAGCAACTAGCAGTTCTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGAAGCAAATTTTAAAGATTTCGGGAGCAACTAGCAGTTCTTCA  650

seq1  AGACACCAAGAATAATATCTGCAGTTTAAGAAAATTTGTGTCAACCCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCAAGAATAATATCTGCAGTTTAAGAAAATTTGTGTCAACCCAAT  700

seq1  TTAGAGGGAATAAAAATGTCATGAATCAGATCATTTTTTTCCACAGTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGGGAATAAAAATGTCATGAATCAGATCATTTTTTTCCACAGTAAT  750

seq1  TTTGTGTCACACTAAACCCAAAGACTTGTAGTTGCTAAATGGAGGAAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTCACACTAAACCCAAAGACTTGTAGTTGCTAAATGGAGGAAATG  800

seq1  AATTAAGATGTATCAATAAATGAAAGTATCTCAATCATGTCAATGAGCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGATGTATCAATAAATGAAAGTATCTCAATCATGTCAATGAGCCC  850

seq1  TTCACACAGATTGGAATTTCAATGAGATCCCACTTTCAATGTACAAAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACAGATTGGAATTTCAATGAGATCCCACTTTCAATGTACAAAATA  900

seq1  GACTCTAAGTAACCCCCTCTTCATATTTATTCTT-GGTTGGCTAACTGCT  949
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GACTCTAAGTAACCCCCTCTTCATATTTATTCTTGGGTTGGCTAACTGCT  950

seq1  GGACTCTTTCTTGCATGTGAACAGAGTGAGTTTCACGCATTTATTTCGCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTTTCTTGCATGTGAACAGAGTGAGTTTCACGCATTTATTTCGCA  1000

seq1  GAGATTTCCATTTTGACTTTCTCTCCCCTGCTCCGGTTAATGGGTACTTA  1049
      |||||||||||||||||||||||||||||||||  | |||||||||||||
seq2  GAGATTTCCATTTTGACTTTCTCTCCCCTGCTC--GGTAATGGGTACTTA  1048

seq1  AATTAAAGTGGGAGCCATTTTGCTTTATTACTTTAATTTCTTTAAAAGTG  1099
      |    ||||||||||   |||||||   ||| ||||||||||  ||||||
seq2  A---TAAGTGGGAGC--ATTTGCTT--ATAC-TTAATTTCTT--AAAGTG  1088

seq1  AGTTCTATTCCTCTCTTATTTCCAGTTCAAAGACAGCATATAGTCTTAAT  1149
      || |||||||||||||||||| ||| |||||||||||||||||   ||||
seq2  AG-TCTATTCCTCTCTTATTT-CAG-TCAAAGACAGCATATAGGTCTAAT  1135

seq1  AAACTTCAAATGTATTTGGATAGCTGATAAATTTAATGATCTCATCAACT  1199
       ||||   |||| |||||||| ||||||  | |||   |||||||| |||
seq2  -AACT--CAATGAATTTGGATTGCTGAT--AGTTATGAATCTCATCCACT  1180

seq1  TAAAAAATGGCAAG  1213
      | ||||||||||||
seq2  TGAAAAATGGCAAG  1194


seq1: chr16_40694962_40696134
seq2: B6Ng01-260A10.g_64_1209 (reverse)

seq1  CTGCTGAGCTATCATTTTAGTCCTGCAAATTTTATTTTATTTAAAAAAAT  50
      ||||||||| ||||   ||||||||  || ||||||||||||  ||||| 
seq2  CTGCTGAGC-ATCA--GTAGTCCTGGCAAATTTATTTTATTT--AAAAAG  45

seq1  TATTATTCTCTCTCTATCTGTGGCCATACATTACTTATACACCAGTTTTC  100
      || || |||||||| ||| |||| ||||||| || |||||||||||||  
seq2  TAATAATCTCTCTC-ATCCGTGG-CATACATAAC-TATACACCAGTTT--  90

seq1  CCCAGAGAACTTACTTACAGTTTTGGGTTTTTGTTTTGTTTTGTTTTTGC  150
      |||||||||| ||| |||||||||||      |||||||||  | |||||
seq2  CCCAGAGAAC-TAC-TACAGTTTTGG------GTTTTGTTTGTTGTTTGC  132

seq1  TTGTTTTTTCGTTCATTTGTTTGTTTGTTTGTTTTTAGAACTTCCCACGC  200
      |   ||||||| |||||   |||||||||   |||||| |||||||||||
seq2  T--GTTTTTCG-TCATT--GTTGTTTGTT--GTTTTAG-ACTTCCCACGC  174

seq1  CACTTGGGATGCTTATTGCTGTGGGTATTATATAGGCAAATCACAGGATT  250
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAC-TGGGATGCTTATTGCTGTGGGTATTATATAGGCAAATCACAGGATT  223

seq1  GAAAGGTTGGAGCAAAGTAGTAGATGCTAAGGGTGATTATGAATCACATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTTGGAGCAAAGTAGTAGATGCTAAGGGTGATTATGAATCACATT  273

seq1  CTCATGAAATGACTCTAAGAAAGAAGTTCCTCATGATGTCCTACTGAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGAAATGACTCTAAGAAAGAAGTTCCTCATGATGTCCTACTGAGTT  323

seq1  TCTGAGTCTATGGAACCAGGGAGTTCAAGAATGGATACAATTTGAGAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTCTATGGAACCAGGGAGTTCAAGAATGGATACAATTTGAGAGTA  373

seq1  CGGTCCGTTTGTGAAGAATGAGGTCATTTCTGAATCACTGCCTTAAACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCCGTTTGTGAAGAATGAGGTCATTTCTGAATCACTGCCTTAAACTC  423

seq1  TTACCTACTATAGGCTATTGCATATTTTATTTGTTATAATTGTTATACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTACTATAGGCTATTGCATATTTTATTTGTTATAATTGTTATACAG  473

seq1  TTAGTGTTTATTGTACTTAAAAACTAATATACAGAGTTTTTCTTTAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTTTATTGTACTTAAAAACTAATATACAGAGTTTTTCTTTAACAA  523

seq1  AGGACAGCATTATGAGACTAACAGAGACTGTTTGTAATTATTGAAGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGCATTATGAGACTAACAGAGACTGTTTGTAATTATTGAAGAAGA  573

seq1  ACCGAAAATTCTGTGATTTGAATTAGTTAAGGAATGGTAAAACCAGAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAAAATTCTGTGATTTGAATTAGTTAAGGAATGGTAAAACCAGAAGC  623

seq1  AAAAGTAGCCAGCGGAAGACTGTGAAGTTATGTATTGTCTCTTTTCAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAGCCAGCGGAAGACTGTGAAGTTATGTATTGTCTCTTTTCAGAA  673

seq1  CCATGTGGTTCTTTGTCACAATGGAAGGAAGACAATTCAGAAAGACAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGGTTCTTTGTCACAATGGAAGGAAGACAATTCAGAAAGACAAGA  723

seq1  GGAGTCAAAGACATTGGTGGGAAAACAATGTAAAAAAATCATTATAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCAAAGACATTGGTGGGAAAACAATGTAAAAAAATCATTATAAACA  773

seq1  TTGGAAATACCACTTAGAGTATAGGGGCAAGGACAAGCATAGTCAGATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAATACCACTTAGAGTATAGGGGCAAGGACAAGCATAGTCAGATAA  823

seq1  CATAGTCCATATTTTCTTCCAACACAACTCACTCTACAGCTAGGCCGCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTCCATATTTTCTTCCAACACAACTCACTCTACAGCTAGGCCGCAC  873

seq1  TCTCCTGTGCTGTCACACCAAACAAATTTCTACACATATTGTAGGTCCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGTGCTGTCACACCAAACAAATTTCTACACATATTGTAGGTCCCT  923

seq1  GTGTAGAAAGAAACACTACACACAGGACCATGTCCTATATGAAAGGGGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGAAAGAAACACTACACACAGGACCATGTCCTATATGAAAGGGGTT  973

seq1  TGCAGCCTCATAGGAGGAACAATAATATGAACTAACCAGTATCCCCACTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCTCATAGGAGGAACAATAATATGAACTAACCAGTATCCCCACTG  1023

seq1  CTTTCAGGGACTAAACCTCATGGCTCCAGATGCATATGTAGCAGAGCATG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGGGACTAAACCTCATGGCTCCAGATGCATATGTAGCAGAGCATG  1073

seq1  GCCTAGTTGAACATTGATGGGAAGAGAGACCCTTTGCCCTGTGAAGGTTC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGTTGAACATTGATGGGAAGAGAGACCCTTTGCCCTGTGAAGGTTC  1123

seq1  TATGTCCCAGTGAAGGGGAATTC  1173
      |||||||||||||||||||||||
seq2  TATGTCCCAGTGAAGGGGAATTC  1146


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