BAC Information

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BAC

Clone NameB6Ng01-261A12
Chromosome16 (Build37)
Map Location 47,743,891 - 47,874,688
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC628757, LOC628776
Downstream geneEG667741, EG639644, EG637273, Dppa4, Dppa2, EG433023, Morc1, Trat1, EG667501, Retnlb, Retnla, Retnlg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261A12.bB6Ng01-261A12.g
ACCGA065802GA065803
length1,1581,191
definitionB6Ng01-261A12.b B6Ng01-261A12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,743,891 - 47,744,834)(47,873,434 - 47,874,688)
sequence
gaattcaaggcccatacctgaacatgataaaaacaatctacagcaaacca
atagccaacatcaaagtaaatggtgagaatcttgaagcaatcccactaaa
atcagggactagacaaggctgtccactctcgccctacctattcaacattg
tacttgaagtcctagccagagcaatttgacaacaaaaggagatcaagggg
atacaaattggaaaggaagaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgacccaaaaattccaccagagaactcctaagcct
gataaacagcttcagtgaagtagccggatataaaattaactcaaacaagt
caatggcctttctgtacacaaaggataaacaggctgagaaagaaattagg
gaaacaacacccttctcaatagtcccaaataatataaaacaccttggcgt
gactctaactaaggaagtgaaagatctgtataagaacttcaagtctctaa
agaaagaaattaaagaagatctcagatgatggaaagatctcccatgctca
tggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaat
ctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacg
aattagaaagggcaatcggcagatacacctgaaataacaaaaaacctagg
atagcaaaaactcttctcaaggataaaagacagtcttaaagatggctcca
tcattcaaacctcccagggctcattctcacattaagtgaaaaatgactct
gtgggatcaattgttgaagttatgggaagtgacccattgttgagctcatt
tgtgttaattctggatgcgcacacttagttcaccactttatttttatcca
tcatccattctttttaccatcttccttaagtaaactattttgtcgtgttt
aagttgtttaaacgattgagagtttttaccaccatttttgttgttgtttt
gttttttgtattgacttgggtctaggtagccaggcagtcttgaatgtggc
atgtacagcactgaccttctgaatctgatttaaatgaattgccacattat
ggagaggatgaaagccatgagacatctctttcatggttcaaatgaagctc
tgatgctg

gaattctacatctccgatgcaaatgcaagagagagagagagagagagaga
aagagagagagagagagagagagactgggtctggtttgagctttaacaac
tccacagctcacccccagtgacacttcttccaataaggccacacccactg
caacaaggccaccctcctaatccatcttagtgagtgccactccctagtga
ccaagcattcaaatatataagcttatggggatcatttctattcaaatcac
cacaccatccattccatattcccgtctccaagtttctgcatgctatttgg
gataaataatactgggaaatcaaggaaactaataatacagctttatgttt
cacttgtatggcatttcttacagtctcacctatggttatgctaatgttaa
tactgacttatttacagatcagaaatgaaaatgggctgcagtcagagaca
cgagctttacttttgatttttgctcaaatagagaatgtgggtggttattt
tgtactgcagtttcctttcgttaactaaggcagttgaccacatgcttggt
aaaggccaagcatgtgtgtgaattattagtgtatgtgaattaacccgcaa
atcctgcagtggggaaacagatacagcccgtttatctctaatgattttct
tcaccttttctggtgaaatattttgagccataatagggcaagtgaaaaga
tgtggcaatggagggactctcttgttctttaaatcaacataataggtatg
gaagataacaagaactcgggagctgtaactgctagagattgtgtagttta
ctttaactgtgttttagggaaaatggttcaaataggtagtaaccagttta
aaataaaacctgataaatttttgaataagaagtataactcacgtctcctg
tctcttaatactgttttgtttttcattatgtcttaccatgctggcttttt
ttttaaatcatgtgagaatatatggagacttcttttctagtcagtaacac
tgcatatgaaagtaagtaatgagatatgtatttttaggcagggagattta
gcaaatcctctgacattatgaaacagatggtatcgtaaagagcccattgt
cggatacctatatgattggggatctgtagttaactgacctaattgatcaa
gctagtcccaccgtatatatatatgcttgcagaacacaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_47743891_47744834
seq2: B6Ng01-261A12.b_279_1206

seq1  TCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCAAAAATTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCAAAAATTCC  50

seq1  ACCAGAGAACTCCTAAGCCTGATAAACAGCTTCAGTGAAGTAGCCGGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGAACTCCTAAGCCTGATAAACAGCTTCAGTGAAGTAGCCGGATA  100

seq1  TAAAATTAACTCAAACAAGTCAATGGCCTTTCTGTACACAAAGGATAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTAACTCAAACAAGTCAATGGCCTTTCTGTACACAAAGGATAAAC  150

seq1  AGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCCCAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCCCAAAT  200

seq1  AATATAAAACACCTTGGCGTGACTCTAACTAAGGAAGTGAAAGATCTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAAACACCTTGGCGTGACTCTAACTAAGGAAGTGAAAGATCTGTA  250

seq1  TAAGAACTTCAAGTCTCTAAAGAAAGAAATTAAAGAAGATCTCAGATGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACTTCAAGTCTCTAAAGAAAGAAATTAAAGAAGATCTCAGATGAT  300

seq1  GGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATG  350

seq1  GCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAAT  400

seq1  TCCAACTCAATTCTTCAACGAATTAGAAAGGGCAATCGGCAGATACACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTCAATTCTTCAACGAATTAGAAAGGGCAATCGGCAGATACACCT  450

seq1  GAAATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCAAGGATAAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCAAGGATAAAAGA  500

seq1  CAGTCTTAAAGATGGCTCCATCATTCAAACCTCCCAGGGCTCATTCTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTAAAGATGGCTCCATCATTCAAACCTCCCAGGGCTCATTCTCAC  550

seq1  ATTAAGTGAAAAATGACTCTGTGGGATCAATTGTTGAAGTTATGGGAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTGAAAAATGACTCTGTGGGATCAATTGTTGAAGTTATGGGAAGT  600

seq1  GACCCATTGTTGAGCTCATTTGTGTTAATTCTGGATGCGCACACTTAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCATTGTTGAGCTCATTTGTGTTAATTCTGGATGCGCACACTTAGTT  650

seq1  CACCACTTTATTTTTATCCATCATCCATTCTTTTTACCATCTTCCTTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTTTATTTTTATCCATCATCCATTCTTTTTACCATCTTCCTTAAG  700

seq1  TAAACTATTTTGTCGTGTTTAAGTTGTTTAAACGATTGAGAGTTTTTTAC  750
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAAACTATTTTGTCGTGTTTAAGTTGTTTAAACGATTGAGAG-TTTTTAC  749

seq1  CACCATTTTTGTTTGTTTGTTTTTGTTTTTTGTTATTGACTTGGGTCTAA  800
      ||||||||||| |||||   |||||||||||| ||||||||||||||| |
seq2  CACCATTTTTG-TTGTT--GTTTTGTTTTTTG-TATTGACTTGGGTCT-A  794

seq1  GGTAGGCCAGGCAGGTCTTGAATGTGGCATGTAACAGGCACTGACCTTCT  850
      |||| |||||||| |||||||||||||||||| ||| |||||||||||||
seq2  GGTA-GCCAGGCA-GTCTTGAATGTGGCATGT-ACA-GCACTGACCTTCT  840

seq1  GAATCTGAATTTTAAATGAAATTGCACAATTATGGAGA-GATGAAACCCC  899
      ||||||||  |||||||| ||||||   |||||||||| ||||||| || 
seq2  GAATCTGA--TTTAAATG-AATTGCCACATTATGGAGAGGATGAAAGCC-  886

seq1  AATGAGACATCTCCTTCATGTTACAAAATGAAGCTCCTGATGCTG  944
       |||||||||||| |||||| | | |||||||||| |||||||||
seq2  -ATGAGACATCTCTTTCATGGTTC-AAATGAAGCT-CTGATGCTG  928


seq1: chr16_47873434_47874688
seq2: B6Ng01-261A12.g_66_1256 (reverse)

seq1  TTTTGTGTTCATATATTGAATCATCATTTTATTTCTATATGTAAATGATA  50
                                                        
seq2  --------------------------------------------------  0

seq1  ATAACTAGCATTTTGT-TTTTCAGACTATAATAATATCAGTGTGGAACTA  99
                |||||| || |   |  |||   |||| |  |||| ||||
seq2  ----------TTTTGTGTTCTGCAAGCATATATATAT-ACGGTGGGACTA  39

seq1  GGTTGTATCAATTTGGGTCAGTTAACTACAG-TTCCCAATCATTATAGTA  148
      | ||| ||||| || |||||||||||||||| | |||||||| |||||  
seq2  GCTTG-ATCAA-TTAGGTCAGTTAACTACAGATCCCCAATCA-TATAGGT  86

seq1  ATCCAACAAT-GGCTCTTTACGGTATCATTCTGTTTCATAATGTCAGAGA  197
      |||| ||||| ||||||||||| || || |||||||||||||||||||| 
seq2  ATCCGACAATGGGCTCTTTACGATACCA-TCTGTTTCATAATGTCAGAGG  135

seq1  TTTTGCTAAATCTCCCTTGCT-AAAATACATTATCTTCATTACTTACTTT  246
       ||||||||||||||||  || |||||||| |||| ||||||||||||||
seq2  ATTTGCTAAATCTCCCTGCCTAAAAATACA-TATC-TCATTACTTACTTT  183

seq1  CATATGCAGTTGTTACCTGACTAAGAAAG-AGTCTCCATATATTCTCAAC  295
      ||||||||| ||||| |||||||  |||| ||||||||||||||||| ||
seq2  CATATGCAG-TGTTA-CTGACTAGAAAAGAAGTCTCCATATATTCTC-AC  230

seq1  ATGATTTAAAAAAAAAGCCAGCATGGTAAGACATAATGAAAAACAAAACA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTAAAAAAAAAGCCAGCATGGTAAGACATAATGAAAAACAAAACA  280

seq1  GTATTAAGAGACAGGAGACGTGAGTTATACTTCTTATTCATAAATTTATC  395
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTATTAAGAGACAGGAGACGTGAGTTATACTTCTTATTCAAAAATTTATC  330

seq1  AGGTTTTATTTTAAACTGGTTACTACCTATTTGAACCATTTTCCCTAAAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTATTTTAAACTGGTTACTACCTATTTGAACCATTTTCCCTAAAA  380

seq1  CACAGTTAAAGTAAACTACACAATCTCTAGCAGTTACAGCTCCCGAGTTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTAAAGTAAACTACACAATCTCTAGCAGTTACAGCTCCCGAGTTC  430

seq1  TTGTTATCTTCCATACCTATTATGTTGATTTAAAGAACAAGAGAGTCCCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATCTTCCATACCTATTATGTTGATTTAAAGAACAAGAGAGTCCCT  480

seq1  CCATTGCCACATCTTTTCACTTGCCCTATTATGGCTCAAAATATTTCACC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGCCACATCTTTTCACTTGCCCTATTATGGCTCAAAATATTTCACC  530

seq1  AGAAAAGGTGAAGAAAATCATTAGAGATAAACGGGCTGTATCTGTTTCCC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGTGAAGAAAATCATTAGAGATAAACGGGCTGTATCTGTTTCCC  580

seq1  CACTGCAGGATTTGCGGGTTAATTCACATACACTAATAATTCACACACAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCAGGATTTGCGGGTTAATTCACATACACTAATAATTCACACACAT  630

seq1  GCTTGGCCTTTACCAAGCATGTGGTCAACTGCCTTAGTTAACGAAAGGAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGCCTTTACCAAGCATGTGGTCAACTGCCTTAGTTAACGAAAGGAA  680

seq1  ACTGCAGTACAAAATAACCACCCACATTCTCTATTTGAGCAAAAATCAAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGTACAAAATAACCACCCACATTCTCTATTTGAGCAAAAATCAAA  730

seq1  AGTAAAGCTCGTGTCTCTGACTGCAGCCCATTTTCATTTCTGATCTGTAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGCTCGTGTCTCTGACTGCAGCCCATTTTCATTTCTGATCTGTAA  780

seq1  ATAAGTCAGTATTAACATTAGCATAACCATAGGTGAGACTGTAAGAAATG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTCAGTATTAACATTAGCATAACCATAGGTGAGACTGTAAGAAATG  830

seq1  CCATACAAGTGAAACATAAAGCTGTATTATTAGTTTCCTTGATTTCCCAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACAAGTGAAACATAAAGCTGTATTATTAGTTTCCTTGATTTCCCAG  880

seq1  TATTATTTATCCCAAATAGCATGCAGAAACTTGGAGACGGGAATATGGAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTATCCCAAATAGCATGCAGAAACTTGGAGACGGGAATATGGAA  930

seq1  TGGATGGTGTGGTGATTTGAATAGAAATGATCCCCATAAGCTTATATATT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGTGTGGTGATTTGAATAGAAATGATCCCCATAAGCTTATATATT  980

seq1  TGAATGCTTGGTCACTAGGGAGTGGCACTCACTAAGATGGATTAGGAGGG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCTTGGTCACTAGGGAGTGGCACTCACTAAGATGGATTAGGAGGG  1030

seq1  TGGCCTTGTTGCAGTGGGTGTGGCCTTATTGGAAGAAGTGTCACTGGGGG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTGTTGCAGTGGGTGTGGCCTTATTGGAAGAAGTGTCACTGGGGG  1080

seq1  TGAGCTGTGGAGTTGTTAAAGCTCAAACCAGACCCAGTCTCTCTCTCTCT  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGTGGAGTTGTTAAAGCTCAAACCAGACCCAGTCTCTCTCTCTCT  1130

seq1  CTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTTGCATTTGCATC-CAG  1244
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  CTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTTGCATTTGCATCGGAG  1180

seq1  ATGTAGAATTC  1255
      |||||||||||
seq2  ATGTAGAATTC  1191


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