BAC Information

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BAC

Clone NameB6Ng01-261A21
Chromosome16 (Build37)
Map Location 10,840,949 - 10,983,320
singlet/doubletdoublet
Overlap geneA630055G03Rik, Litaf
Upstream geneGrin2a, LOC665291, LOC100042534, 4930517K11Rik, Atf7ip2, Emp2, Tekt5, Nubp1, BC068110, Ciita, LOC669998, Dexi, 4932416N17Rik, Socs1, Tnp2, Prm3, Prm2, Prm1
Downstream geneLOC100043147, LOC100042597, Snn, Txndc11, Zc3h7a, LOC665450, LOC622271, Rsl1d1, Gspt1, Tnfrsf17, 4933437K13Rik, LOC100043171, C530044N13Rik, 2700045P11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261A21.bB6Ng01-261A21.g
ACCGA065820GA065821
length795941
definitionB6Ng01-261A21.b B6Ng01-261A21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,840,949 - 10,841,740)(10,982,397 - 10,983,320)
sequence
gaattcactttttagaccaggctggcctcgaactcagaaatccgcctgcc
tctgcctccccagtgctgggattaaaggcgtgcgccaccacacccggccc
tagtaacattttttgtgtggtgtagtttttaaaagtaagccctactatct
gtttgtcttaaagacagggtcttatatagctcaggtagtctccagctcat
gactctcttccctcccctccagcccgttgagattacgggtgtgcactact
gtgtctgcagtgctggggatggaacccagggcttcctgcaagctaagcaa
acactgtattactgagccacatttccagcctaaaatgttgatttattaaa
acagttttaggtttttggaaagaatgaacagaaagtgtttccataagcac
actgaagctgaggctgtgtatgtgttaagcaaacacatgagctagagccc
cagctcttgtgtcttcaaggctagccagatgtggcaggcctcctgctgca
gcctccagagtgtggcccacaccccacactcggcccccacacccagcctc
acctggattgccatgagcatcaggtggtacttgtcaccagaaaagctaag
gagtcacctggcaggagatggacatcgagggacaagagaggatgaggact
caggtgatctagacctgcctccttcctgccctccacccccctagaaaaaa
gcatcgaggccttgagcccagtttgtagctcaggccaacctcagatttcc
catcttcctgcctctggttaactgggtaatgcaggcctgctcctc
gaattccactcttctttacagctttctttttttttaaaaaaaaaaaaaaa
agagccctggctcttgcagaggacccaagtttgattcccagcacccacac
agaggcttagaaccatctgtaactccagttctcaggaacccagtgccctc
ttctgggctctgcagacaccagtctggggcacatacagccatgcaggcaa
aacacccacacataaaataaaaagaaatacatctttaaaaaagataagag
tttcctcgaaacgtttaaagagattgctggtgagactggaatggcataga
aagttctggagccttagactctggcattcgtgaatgatgcccaaggcttt
gtgtggtgtggtgtttgttgtagtgagttactgggtggctcctggcattc
tagggttggagggttattttgaggatctaagcttattcttgctaaaggtt
aagtgctttggggaactctgttgggtcctccagaggcccagactggtgcc
ccctgctggactcccccaaccccacctccaccccaggatacagatgtgct
gcctctgggcagatgtccaccctgttctgtgcctttcccgtcccccaaac
ttttcattcactctaagaagctggtctcgtgcccacctccttgcgtctgc
ttggggctttgctagctaacctttcagttctccctgtagactctttaggc
cagccaggaagggctcccagcttactgtgcctaacccatcttttgacttc
ctgaagtccctgcgtgagaatgggccatagcacaaagcacagcaggggac
tgtgaagtggagggtgatatagactctgagtcctctcgccaaatgtataa
actctctcaccgccaggacctctctagatggcagaatttctttggtttgc
tctggccccttacaaaattgtcagaccctaccgatccaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_10840949_10841740
seq2: B6Ng01-261A21.b_46_840

seq1  GAATTCACTTTTTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTTTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCC  50

seq1  TCTGCCTCCCCAGTGCTGGGATTAAAGGCGTGCGCCACCACACCCGGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCCAGTGCTGGGATTAAAGGCGTGCGCCACCACACCCGGCCC  100

seq1  TAGTAACATTTTTTGTGTGGTGTAGTTTTTAAAAGTAAGCCCTACTATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAACATTTTTTGTGTGGTGTAGTTTTTAAAAGTAAGCCCTACTATCT  150

seq1  GTTTGTCTTAAAGACAGGGTCTTATATAGCTCAGGTAGTCTCCAGCTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCTTAAAGACAGGGTCTTATATAGCTCAGGTAGTCTCCAGCTCAT  200

seq1  GACTCTCTTCCCTCCCCTCCAGCCCGTTGAGATTACGGGTGTGCACTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTCTTCCCTCCCCTCCAGCCCGTTGAGATTACGGGTGTGCACTACT  250

seq1  GTGTCTGCAGTGCTGGGGATGGAACCCAGGGCTTCCTGCAAGCTAAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGCAGTGCTGGGGATGGAACCCAGGGCTTCCTGCAAGCTAAGCAA  300

seq1  ACACTGTATTACTGAGCCACATTTCCAGCCTAAAATGTTGATTTATTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTATTACTGAGCCACATTTCCAGCCTAAAATGTTGATTTATTAAA  350

seq1  ACAGTTTTAGGTTTTTGGAAAGAATGAACAGAAAGTGTTTCCATAAGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTTAGGTTTTTGGAAAGAATGAACAGAAAGTGTTTCCATAAGCAC  400

seq1  ACTGAAGCTGAGGCTGTGTATGTGTTAAGCAAACACATGAGCTAGAGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGCTGAGGCTGTGTATGTGTTAAGCAAACACATGAGCTAGAGCCC  450

seq1  CAGCTCTTGTGTCTTCAAGGCTAGCCAGATGTGGCAGGCCTCCTGCTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTTGTGTCTTCAAGGCTAGCCAGATGTGGCAGGCCTCCTGCTGCA  500

seq1  GCCTCCAGAGTGTGGCCCACACCCCACACTCGGCCCCCACACCCAGCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCAGAGTGTGGCCCACACCCCACACTCGGCCCCCACACCCAGCCTC  550

seq1  ACCTGGATTGCCATGAGCATCAGGTGGTACTTGTCACCAGAAAAGCTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGATTGCCATGAGCATCAGGTGGTACTTGTCACCAGAAAAGCTAAG  600

seq1  GAGTCACCTGGCAGGAGATGGACATCGAGGGACAAGAGAGGATGAGGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACCTGGCAGGAGATGGACATCGAGGGACAAGAGAGGATGAGGACT  650

seq1  CAGGTGATCTAGACCTGCCTCCTTCCTGCCCTCCA-CCCCCTAG-AAAAA  698
      ||||||||||||||||||||||||||||||||||| |||||||| |||||
seq2  CAGGTGATCTAGACCTGCCTCCTTCCTGCCCTCCACCCCCCTAGAAAAAA  700

seq1  GCATCGAGGCCTTGAGCCCAGTTTGTAGCTCAGGCCAACCTCAGATTTCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCGAGGCCTTGAGCCCAGTTTGTAGCTCAGGCCAACCTCAGATTTCC  750

seq1  CATCTTCCTGCCTCTGGTTAACTGGG-ATTGCAGGCCTGCTCCTC  792
      |||||||||||||||||||||||||| | ||||||||||||||||
seq2  CATCTTCCTGCCTCTGGTTAACTGGGTAATGCAGGCCTGCTCCTC  795

seq1: chr16_10982397_10983320
seq2: B6Ng01-261A21.g_67_1007 (reverse)

seq1  CCCT-GATCTGTAGGGT-TGAC-ATTTTGTAAGGGGCCAGAGC-AACCAA  46
      |||| |||| ||||||| |||| |||||||||||||||||||| ||||||
seq2  CCCTGGATCGGTAGGGTCTGACAATTTTGTAAGGGGCCAGAGCAAACCAA  50

seq1  --GAATTCTGCCATCTA-AGGAGTCCT-GCGGTGAG-GGGTTTAT-CATT  90
         |||||||||||||| ||  ||||| |||||||| | |||||| ||||
seq2  AGAAATTCTGCCATCTAGAGAGGTCCTGGCGGTGAGAGAGTTTATACATT  100

seq1  TGGCGAGAGGACTCAGAGTC--TATCACCCTCCACTTCACAGTCCCCTGC  138
      ||||||||||||||||||||  ||||||||||||||||||||||||||||
seq2  TGGCGAGAGGACTCAGAGTCTATATCACCCTCCACTTCACAGTCCCCTGC  150

seq1  TGTGCTTTGTGCTATGGCCCATTCTCACGCAGGGACTTCAGGAAGTC-AA  187
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGTGCTTTGTGCTATGGCCCATTCTCACGCAGGGACTTCAGGAAGTCAAA  200

seq1  AGATGGGTTAGGCACAGTAAGCTGGGAGCCCTTCCTGGCTGGCCTAAAGA  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGTTAGGCACAGTAAGCTGGGAGCCCTTCCTGGCTGGCCTAAAGA  250

seq1  GTCTACAGGGAG-ACTG-AAGGTTAGCTAGCAA--GCCCAAGCAGACGCA  283
      |||||||||||| |||| |||||||||||||||   ||||||||||||||
seq2  GTCTACAGGGAGAACTGAAAGGTTAGCTAGCAAAGCCCCAAGCAGACGCA  300

seq1  AGGAGGTGGGCACGAGACCAGCTTCTTAGAGTGAATGAAAAGTTTGGGGG  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTGGGCACGAGACCAGCTTCTTAGAGTGAATGAAAAGTTTGGGGG  350

seq1  ACGGGAAAGGCACAGAACAGGGTGGACATCTGCCCAGAGGCAGCACATCT  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGAAAGGCACAGAACAGGGTGGACATCTGCCCAGAGGCAGCACATCT  400

seq1  GTATCCTGGGGTGGAGGTGGGGTTGGGGGAGTCCAGCAGGGGGCACCAGT  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCTGGGGTGGAGGTGGGGTTGGGGGAGTCCAGCAGGGGGCACCAGT  450

seq1  CTGGGCCTCTGGAGGACCCAACAGAGTTCCCCAAAGCACTTAACCTTTAG  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCTCTGGAGGACCCAACAGAGTTCCCCAAAGCACTTAACCTTTAG  500

seq1  CAAGAATAAGCTTAGATCCTCAAAATAACCCTCCAACCCTAGAATGCCAG  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATAAGCTTAGATCCTCAAAATAACCCTCCAACCCTAGAATGCCAG  550

seq1  GAGCCACCCAGTAACTCACTACAACAAACACCACACCACACAAAGCCTTG  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACCCAGTAACTCACTACAACAAACACCACACCACACAAAGCCTTG  600

seq1  GGCATCATTCACGAATGCCAGAGTCTAAGGCTCCAGAACTTTCTATGCCA  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCATTCACGAATGCCAGAGTCTAAGGCTCCAGAACTTTCTATGCCA  650

seq1  TTCCAGTCTCACCAGCAATCTCTTTAAACGTTTCGAGGAAACTCTTATCT  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTCTCACCAGCAATCTCTTTAAACGTTTCGAGGAAACTCTTATCT  700

seq1  TTTTTAAAGATGTATTTCTTTTTATTTTATGTGTGGGTGTTTTGCCTGCA  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAGATGTATTTCTTTTTATTTTATGTGTGGGTGTTTTGCCTGCA  750

seq1  TGGCTGTATGTGCCCCAGACTGGTGTCTGCAGAGCCCAGAAGAGGGCACT  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTATGTGCCCCAGACTGGTGTCTGCAGAGCCCAGAAGAGGGCACT  800

seq1  GGGTTCCTGAGAACTGGAGTTACAGATGGTTCTAAGCCTCTGTGTGGGTG  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCCTGAGAACTGGAGTTACAGATGGTTCTAAGCCTCTGTGTGGGTG  850

seq1  CTGGGAATCAAACTTGGGTCCTCTGCAAGAGCCAGGGCTCTTTTTTTTTT  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAATCAAACTTGGGTCCTCTGCAAGAGCCAGGGCTCTTTTTTTTTT  900

seq1  TTTTTTAAAAAAAAAGAAAGCTGTAAAGAAGAGTGGAATTC  924
      |||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAAAAAAAAGAAAGCTGTAAAGAAGAGTGGAATTC  941