BAC Information

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BAC

Clone NameB6Ng01-261D02
Chromosome16 (Build37)
Map Location 55,430,421 - 55,556,321
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043449, LOC667927, LOC436421, Zpld1
Downstream geneNfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1, Senp7, Impg2, LOC672835, Abi3bp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261D02.bB6Ng01-261D02.g
ACCGA065923GA065924
length1,1811,101
definitionB6Ng01-261D02.b B6Ng01-261D02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,430,421 - 55,431,163)(55,555,255 - 55,556,321)
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atttatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctacccaa
atggatggacctggagagcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggattcccaagatataaggtacaatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcgcctccttagaattgggaa
caaaacacccatggaaggagttatagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccattatg
ttcttgttattgcctttcaccatctggttgtctctggttaactgacctgt
gggtctcagattggaacaggcctccttggaggcaggtagagctgtgtgtc
ataatttagagatctcctgggaggcaggcagtgctatctctggttaagtg
ggtctcctgtgttcttggataaagcagacctcctgggagacagcaagctg
tggggtggaaaagtagcaccccatctgccatgtgtgcagtagagtgcaga
ctgcagtcagtgaggctctgcaggtgggatgtattctttgtgctagttct
ggtgggggatccagcctgtgttggatatttgagctgatctacttgtgttc
cttggtttagagcagattcttcctggtgaga
gaattcaataggaacatgcgtggccgtgtgtcttctttcacaatggctcc
ttttgcagctctgggaaacatcacatctgagtacgttttcattgacttca
aacttaccacgagtggtggctgacccctaagagccaggtctagagccggg
gctgagaattctcagatgaattaaataccacttttgccattaaaggattt
acacactatcaagagaatgggtctcatgacttatgttccaaaagccatgt
gcagaggaatatacggagggagagtgctaattatccttgcagaccctgac
ggacagagtaggagtaggaattctctggaacaaccagggaagtctgttaa
aaacagaaaatatggagtttgcattgcagagaaaggtgctaatgtggtag
aatgacttggtgggacagaggtcaggagaagatctgctctggaattcatg
agagttccggaagctgaggcaggaatctggctgtttagagacgtgagatg
cgataaggctggcgctaaggagtggctcagtatcagtaaggtatcttgca
tgctaccctaaggaattttgatgtagtctaagtaaaacaaggtggaaggt
tctggaagagaggaggtaaaggactggaatccttctttaagaaaatgatc
tgtttcagacatgttagaccccagaaggctcctgcaggagaaacgattca
tcaagtggatgaacaggagccagggtgctgcagagaagcagagcccacat
ttcagaccgataagactgtataactgacggctgtggggtaggaaggggcc
ggaaggtgactcaccgggaagttgagtcactgccctcagatggtgtgctg
ctttccataggcttgtccactgttcccccttgagtcaccttccctttagg
gtctctgggtgtgaagatcaccgtcttgcctctctctgcagacatttttt
ccaaatgggctgggtgtggagcctaatggtaagtcaagtatttttaattc
atccctggtcctagcagtttcccagatgttgaattatcagtgccccaaaa
cttttcattttttgaagaccatatctctaaggtacgggaaaggggtttaa
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_55430421_55431163
seq2: B6Ng01-261D02.b_495_1226

seq1  GGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTACCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTACCCA  50

seq1  AATGGATGGACCTGGAGAGCATCATCCTGAGTGAGGTAACACATTCACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATGGACCTGGAGAGCATCATCCTGAGTGAGGTAACACATTCACAA  100

seq1  AGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAAAC  150

seq1  CTAGGATTCCCAAGATATAAGGTACAATTTGCTAAACACATGAAACTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATTCCCAAGATATAAGGTACAATTTGCTAAACACATGAAACTCAA  200

seq1  GGAGAATGAAGACTGAAGTGTGGACACTATGCGCCTCCTTAGAATTGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATGAAGACTGAAGTGTGGACACTATGCGCCTCCTTAGAATTGGGA  250

seq1  ACAAAACACCCATGGAAGGAGTTATAGAGACAAAGTTTGGAGCTGAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACACCCATGGAAGGAGTTATAGAGACAAAGTTTGGAGCTGAGATG  300

seq1  AAAGGATGGACCATGTAGAGACTGCCATATCCAGGGATCCACCCCATTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATGGACCATGTAGAGACTGCCATATCCAGGGATCCACCCCATTAT  350

seq1  GTTCTTGTTATTGCCTTTCACCATCTGGTTGTCTCTGGTTAACTGACCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGTTATTGCCTTTCACCATCTGGTTGTCTCTGGTTAACTGACCTG  400

seq1  TGGGTCTCAGATTGGAACAGGCCTCCTTGGAGGCAGGTAGAGCTGTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTCAGATTGGAACAGGCCTCCTTGGAGGCAGGTAGAGCTGTGTGT  450

seq1  CATAATTTAGAGATCTCCTGGGAGGCAGGCAGTGCTATCTCTGGTTAAAG  500
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CATAATTTAGAGATCTCCTGGGAGGCAGGCAGTGCTATCTCTGGTT-AAG  499

seq1  TGGGTCTCCTGTGTTCTTGGATAAAGCAGACCTCCTGGGAGACAGGCAAG  550
      |||||||||||||||||||||||||||||||||||||||||||| |||| 
seq2  TGGGTCTCCTGTGTTCTTGGATAAAGCAGACCTCCTGGGAGACA-GCAA-  547

seq1  GCTGTGGGGTGGAAAAGTAGGCACCCCAATCTGCCATGTGTGCAAGTAGA  600
      ||||||||||||||||||| ||||||| ||||||||||||||| ||||||
seq2  GCTGTGGGGTGGAAAAGTA-GCACCCC-ATCTGCCATGTGTGC-AGTAGA  594

seq1  GGTGCAGACTGGAAGGTCAGTGAGGCTCTGGCAGAGTGGGATGTATTCCT  650
       |||||||||| |  |||||||||||||| |||| |||||||||||| ||
seq2  -GTGCAGACTGCA--GTCAGTGAGGCTCT-GCAG-GTGGGATGTATT-CT  638

seq1  TTGTGCTAGGTTCTGTGGGGGGATCCCAGCTTGTG-TGGATATTGAGGCA  699
      |||||||| ||||||  ||||||| ||||| |||| ||||||||   || 
seq2  TTGTGCTA-GTTCTGGTGGGGGAT-CCAGCCTGTGTTGGATATTTGAGC-  685

seq1  GGGGTCTCACCTGTGT--CTCTGGTTAGAGCAGAT--CTCCTGG-GAGA  743
        | ||| || |||||  ||  | |||||||||||   |||||| ||||
seq2  -TGATCT-ACTTGTGTTCCTTGGTTTAGAGCAGATTCTTCCTGGTGAGA  732

seq1: chr16_55555255_55556321
seq2: B6Ng01-261D02.g_69_1169 (reverse)

seq1  TTTAAACCC---TTCCGTACATT-TAGA-ATGGTCT---CAAAATG--AA  40
      |||||||||   | |||||| ||  ||| |||||||    ||||||  ||
seq2  TTTAAACCCCTTTCCCGTACCTTAGAGATATGGTCTTCAAAAAATGAAAA  50

seq1  GTTTT-GGGCA-TGATAAT--CACATCTTGG-AACTGCTAGGAC--AGGA  83
      ||||| ||||| |||||||   |||||| || ||||||||||||   |||
seq2  GTTTTGGGGCACTGATAATTCAACATCTGGGAAACTGCTAGGACCAGGGA  100

seq1  AGAAT--AAAATAC-TGAC-TACAATTA-GCT-CACA-CCAG-CCATT--  123
       ||||  ||||||| |||| ||| |||| ||| |||| |||| |||||  
seq2  TGAATTAAAAATACTTGACTTACCATTAGGCTCCACACCCAGCCCATTTG  150

seq1  GGAAAAATGTCTGCAGAGAGAGGC-AGAC-GTGATC-TCACACCCAGAGA  170
      | |||||||||||||||||||||| |||| |||||| |||||||||||||
seq2  GAAAAAATGTCTGCAGAGAGAGGCAAGACGGTGATCTTCACACCCAGAGA  200

seq1  CCCTAAAGGGAAGGTGACTCAAGGGGGAACAGTGGACA--GCTATGG-AA  217
      ||||||||||||||||||||||||||||||||||||||   |||||| ||
seq2  CCCTAAAGGGAAGGTGACTCAAGGGGGAACAGTGGACAAGCCTATGGAAA  250

seq1  GCAGCACACCATCTGAGGGCAGTGACTCAACTT-CCGGTGAGTCACCTTC  266
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCAGCACACCATCTGAGGGCAGTGACTCAACTTCCCGGTGAGTCACCTTC  300

seq1  CGGCCCCTTCCTACCCCACAGCCGTCAGTTATACAGTCTTATCGGTCTGA  316
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCCCTTCCTACCCCACAGCCGTCAGTTATACAGTCTTATCGGTCTGA  350

seq1  AATGTGGGCTCTGCTTCTCTGCAGCACCCTGGCTCCTGTTCATCCACTTG  366
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGGCTCTGCTTCTCTGCAGCACCCTGGCTCCTGTTCATCCACTTG  400

seq1  ATGAATCGTTTCTCCTGCAGGAGCCTTCTGGGGTCTAACATGTCTGAAAC  416
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCGTTTCTCCTGCAGGAGCCTTCTGGGGTCTAACATGTCTGAAAC  450

seq1  AGATCATTTTCTTAAAGAAGGATTCCAGTCCTTTACCTCCTCTCTTCCAG  466
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCATTTTCTTAAAGAAGGATTCCAGTCCTTTACCTCCTCTCTTCCAG  500

seq1  AACCTTCCACCTTGTTTTACTTAGACTACATCAAAATTCCTTAGGGTAGC  516
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTCCACCTTGTTTTACTTAGACTACATCAAAATTCCTTAGGGTAGC  550

seq1  ATGCAAGATACCTTACTGATACTGAGCCACTCCTTAGCGCCAGCCTTATC  566
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGATACCTTACTGATACTGAGCCACTCCTTAGCGCCAGCCTTATC  600

seq1  GCATCTCACGTCTCTAAACAGCCAGATTCCTGCCTCAGCTTCCGGAACTC  616
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTCACGTCTCTAAACAGCCAGATTCCTGCCTCAGCTTCCGGAACTC  650

seq1  TCATGAATTCCAGAGCAGATCTTCTCCTGACCTCTGTCCCACCAAGTCAT  666
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAATTCCAGAGCAGATCTTCTCCTGACCTCTGTCCCACCAAGTCAT  700

seq1  TCTACCACATTAGCACCTTTCTCTGCAATGCAAACTCCATATTTTCTGTT  716
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCACATTAGCACCTTTCTCTGCAATGCAAACTCCATATTTTCTGTT  750

seq1  TTTAACAGACTTCCCTGGTTGTTCCAGAGAATTCCTACTCCTACTCTGTC  766
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACAGACTTCCCTGGTTGTTCCAGAGAATTCCTACTCCTACTCTGTC  800

seq1  CGTCAGGGTCTGCAAGGATAATTAGCACTCTCCCTCCGTATATTCCTCTG  816
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCAGGGTCTGCAAGGATAATTAGCACTCTCCCTCCGTATATTCCTCTG  850

seq1  CACATGGCTTTTGGAACATAAGTCATGAGACCCATTCTCTTGATAGTGTG  866
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGCTTTTGGAACATAAGTCATGAGACCCATTCTCTTGATAGTGTG  900

seq1  TAAATCCTTTAATGGCAAAAGTGGTATTTAATTCATCTGAGAATTCTCAG  916
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCTTTAATGGCAAAAGTGGTATTTAATTCATCTGAGAATTCTCAG  950

seq1  CCCCGGCTCTAGACCTGGCTCTTAGGGGTCAGCCACCACTCGTGGTAAGT  966
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGGCTCTAGACCTGGCTCTTAGGGGTCAGCCACCACTCGTGGTAAGT  1000

seq1  TTGAAGTCAATGAAAACGTACTCAGATGTGATGTTTCCCAGAGCTGCAAA  1016
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTCAATGAAAACGTACTCAGATGTGATGTTTCCCAGAGCTGCAAA  1050

seq1  AGGAGCCATTGTGAAAGAAGACACACGGCCACGCATGTTCCTATTGAATT  1066
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCATTGTGAAAGAAGACACACGGCCACGCATGTTCCTATTGAATT  1100

seq1  C  1067
      |
seq2  C  1101