BAC Information

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BAC

Clone NameB6Ng01-261I10
Chromosome16 (Build37)
Map Location 63,467,054 - 63,621,456
singlet/doubletdoublet
Overlap geneEpha3
Upstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
Downstream geneLOC100043540, Ckt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261I10.bB6Ng01-261I10.g
ACCGA066173GA066174
length1,1641,149
definitionB6Ng01-261I10.b B6Ng01-261I10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,467,054 - 63,468,212)(63,620,312 - 63,621,456)
sequence
gaattcctggaggttgggctctcaactctgtctgttcaagtttcaagcaa
acactgatttttctaggtgttgggtagcagtttggagaaagagcaatatt
cttctaggtattttttttaatgtcatcattgtgagcaactttagactttg
ttttgaagatgtttattataaatacttataacgagcttctaggactgcat
ttcttcaatatgctgctacctgcttaccgctggaatatctgcacactgtg
taatagttatgtgaggatactaaaatttccctcccttccaacactgtcct
tatgtaactgaaattttgtatccttcttgtgatgttgagctatatcctag
attgttttaaacatgggcagttctatggtataggagcactgaagaaaatt
tttttctgcttcccatcacatggctgccagcattaggattttatggtttc
taaggatgaatgatattccatcgtgtattattgtggttggaacccagaat
gttatccaaatcgatcctattttgatttcttgttccctagtttggtggca
ctgtgggagtgctgaggtgttggggcttacaagtcacaattaatcactcc
tgacaggagggacgcaggtaatgagggaagaaccccaagcctgagagcca
ctcctgcagttcagtgaatgagtccaaccatgtgggaaaagcaccagacc
aatacctcctgaaaagagtgcaagtgccttgtgcacaataatgttataat
atgatctgtgatagcaggagggagctgggtgctttggcagaaatttgagg
ttctccattaaactggagacctatttccatattagaaaccttaacatgta
acttctgaccttgaacatcataattccttaaaatagagtttctcccacca
aataaataaataaataaataaataaataaataaaaatttgggtggcttta
tgcttagagaagtgaactgacacagatgtttatttattttttttatagca
tacagtacctgagggctgatggcccatatcagatgtaatttacaagcttc
gtcataatttgttatgatgtgatttatccaaatataactgaccttaaact
taccattactgtttggatgggttggaacagcccattggacccatttcttt
ttgagggggggggg

gaattctctaaagcagcccactatctgttatagacatgggctcttccagt
tccaacaaagaaatttttctaaatattatcactagtaaattgtaaccaat
cataatgttgcctattttagaatcaaacatttggttatcctcaaaactaa
atagtatgtcctggacattcaaacgtatttagaaacataatggaataagg
agtttctcaaactatttttggcattatatgaggaaaaattctattttctg
catgtggattattttttagttcctctggcatgcattttgctaattttagg
atcagacaaatacttagaacacaaagcagatattttcagatattcagata
taaactggtaaatactgcatttcaaacttgaactcagacctatttatctg
tttaggaatttgaggatgttatgtttcaaatgcaatagatttttttaaaa
aatgaatatatatatatatatatatatatatatatatatatatatacaca
cacacacacacacacacacacacatacacacacacacacatacatatgga
tgtcctgcaaattaatttattttatttgttttatatttacaatgtactca
aatattccagcaacagtgtgcctcctatgtaaagtaagagcacagactga
aaactcatcagacatacaccccaatcattctcacagccttgagtcagaaa
ccgtgatttcttagaggagacttgctggatctgaaggggcaatcaccgca
aagttctcatggcctggcagaagacctaaaagaaagaataaaataccaga
aattattgtcataagctatgctaatatgcatataaaagtatgtataagac
actggatccaacacttttacaagagagaagagcttttgtccacagcttta
tcttttctgtctttcattatatcttacattgacaattttataatctagag
cttaatcaacttcaaaggctttttaatgctttagatgcagccttttgcaa
acacccaaactttcctatgcagagttttaattagaaaccttacatttacc
catagatatccaagccatggtttaatggtaaaatgcttagattctattca
gaacctccgagcgttcccataatgaagaaatatatatattatatatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_63467054_63468212
seq2: B6Ng01-261I10.b_47_1210

seq1  GAATTCCTGGAGGTTGGGCTCTCAACTCTGTCTGTTCAAGTTTCAAGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGAGGTTGGGCTCTCAACTCTGTCTGTTCAAGTTTCAAGCAA  50

seq1  ACACTGATTTTTCTAGGTGTTGGGTAGCAGTTTGGAGAAAGAGCAATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGATTTTTCTAGGTGTTGGGTAGCAGTTTGGAGAAAGAGCAATATT  100

seq1  CTTCTAGGTATTTTTTTTAATGTCATCATTGTGAGCAACTTTAGACTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGGTATTTTTTTTAATGTCATCATTGTGAGCAACTTTAGACTTTG  150

seq1  TTTTGAAGATGTTTATTATAAATACTTATAACGAGCTTCTAGGACTGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAGATGTTTATTATAAATACTTATAACGAGCTTCTAGGACTGCAT  200

seq1  TTCTTCAATATGCTGCTACCTGCTTACCGCTGGAATATCTGCACACTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAATATGCTGCTACCTGCTTACCGCTGGAATATCTGCACACTGTG  250

seq1  TAATAGTTATGTGAGGATACTAAAATTTCCCTCCCTTCCAACACTGTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTTATGTGAGGATACTAAAATTTCCCTCCCTTCCAACACTGTCCT  300

seq1  TATGTAACTGAAATTTTGTATCCTTCTTGTGATGTTGAGCTATATCCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAACTGAAATTTTGTATCCTTCTTGTGATGTTGAGCTATATCCTAG  350

seq1  ATTGTTTTAAACATGGGCAGTTCTATGGTATAGGAGCACTGAAGAAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTAAACATGGGCAGTTCTATGGTATAGGAGCACTGAAGAAAATT  400

seq1  TTTTTCTGCTTCCCATCACATGGCTGCCAGCATTAGGATTTTATGGTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGCTTCCCATCACATGGCTGCCAGCATTAGGATTTTATGGTTTC  450

seq1  TAAGGATGAATGATATTCCATCGTGTATTATTGTGGTTGGAACCCAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGATGAATGATATTCCATCGTGTATTATTGTGGTTGGAACCCAGAAT  500

seq1  GTTATCCAAATCGATCCTATTTTGATTTCTTGTTCCCTAGTTTGGTGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCCAAATCGATCCTATTTTGATTTCTTGTTCCCTAGTTTGGTGGCA  550

seq1  CTGTGGGAGTGCTGAGGTGTTGGGGCTTACAAGTCACAATTAATCACTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGAGTGCTGAGGTGTTGGGGCTTACAAGTCACAATTAATCACTCC  600

seq1  TGACAGGAGGGACGCAGGTAATGAGGGAAGAACCCCAAGCCTGAGAGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGAGGGACGCAGGTAATGAGGGAAGAACCCCAAGCCTGAGAGCCA  650

seq1  CTCCTGCAGTTCAGTGAATGAGTCCAACCATGTGGGAAAAGCACCAGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCAGTTCAGTGAATGAGTCCAACCATGTGGGAAAAGCACCAGACC  700

seq1  AATACCTCCTGAAAAGAGTGCAAGTGCCTTGTGCACAATAATGTTATAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTCCTGAAAAGAGTGCAAGTGCCTTGTGCACAATAATGTTATAAT  750

seq1  ATGATCTGTGATAGCAGGAGGGAGCTGGGTGCTTTGGCAGAAATTTGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTGTGATAGCAGGAGGGAGCTGGGTGCTTTGGCAGAAATTTGAGG  800

seq1  TTCTCCATTAAACTGGAGACCTATTTCCATATTAGAAACCTTAACATGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCATTAAACTGGAGACCTATTTCCATATTAGAAACCTTAACATGTA  850

seq1  ACTTCTGACCTTGAACATCATAATTCCTTAAAATAGAGTTTCTCCCACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGACCTTGAACATCATAATTCCTTAAAATAGAGTTTCTCCCACCA  900

seq1  AATAAATAAATAAATAAATAAATAAATAAATAAAAATTTGGTTGGCTTTA  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AATAAATAAATAAATAAATAAATAAATAAATAAAAATTTGGGTGGCTTTA  950

seq1  TGCTTAGAGAAGTGAACTGACACAGATGTTTATTTATTTTTTTAATAGCA  1000
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGCTTAGAGAAGTGAACTGACACAGATGTTTATTTATTTTTTTTATAGCA  1000

seq1  TACAGTACCTGAGGGCTGATGGCCCATATCAGATGTAAATTACAAGCTTC  1050
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TACAGTACCTGAGGGCTGATGGCCCATATCAGATGTAATTTACAAGCTTC  1050

seq1  GTCATAATTTGTTATGATTGTGAATTTATCAAAATATACATGA-CTTAAA  1099
      ||||||||||||||||| |||| ||||||| |||||||  ||| ||||||
seq2  GTCATAATTTGTTATGA-TGTG-ATTTATCCAAATATAACTGACCTTAAA  1098

seq1  CTTTACAATACTGTTT-GATGGGT--GGACAG-CCATT-GAACCATTTC-  1143
      |||  || |||||||| |||||||  | |||| ||||| || ||||||| 
seq2  CTTACCATTACTGTTTGGATGGGTTGGAACAGCCCATTGGACCCATTTCT  1148

seq1  TTTTGAGGGGGGGGGG  1159
      ||||||||||||||||
seq2  TTTTGAGGGGGGGGGG  1164


seq1: chr16_63620312_63621456
seq2: B6Ng01-261I10.g_66_1214 (reverse)

seq1  TTCATATATAA-ATATATATTTCTTCATTATTGGAAACGCTCTGATG-TC  48
      ||||||||||| |||||||||||||||||| ||| ||||||| || | ||
seq2  TTCATATATAATATATATATTTCTTCATTA-TGGGAACGCTCGGAGGTTC  49

seq1  TGAATAGAATCTTAAGCATTTTACCA-TAAACCATGGGCTTGGGATATCT  97
      ||||||||||| |||||||||||||| |||||||| ||||| ||||||||
seq2  TGAATAGAATC-TAAGCATTTTACCATTAAACCAT-GGCTT-GGATATCT  96

seq1  ATGGGGTAAATGTAAGGTTTCTAATTAAAACTCTGCATAGGAAAGTTT-G  146
      || ||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AT-GGGTAAATGTAAGGTTTCTAATTAAAACTCTGCATAGGAAAGTTTGG  145

seq1  GTGTTTGCAAAAGGCTGCATCTAAAGCA-TAAAAAGCCTTTGAAGTTGAT  195
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTGTTTGCAAAAGGCTGCATCTAAAGCATTAAAAAGCCTTTGAAGTTGAT  195

seq1  TAAGCTCTAGATTAT-AAATTGTCAATGTAAGATATAATGAAAGACAGAA  244
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TAAGCTCTAGATTATAAAATTGTCAATGTAAGATATAATGAAAGACAGAA  245

seq1  AAGATAAAGCTGTGGACAAAAGCTCTTCTCTCTTGT-AAAGTGTTGGATC  293
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAGATAAAGCTGTGGACAAAAGCTCTTCTCTCTTGTAAAAGTGTTGGATC  295

seq1  CAGTGTCTTATACATACTTTTATATGCATATTAGCATAGCTTATGACAAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCTTATACATACTTTTATATGCATATTAGCATAGCTTATGACAAT  345

seq1  AATTTCTGGTATTTTATTCTTTC-TTTAGGTCTTCTGCCAGGCCATGAGA  392
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AATTTCTGGTATTTTATTCTTTCTTTTAGGTCTTCTGCCAGGCCATGAGA  395

seq1  AC-TTGCGGTGATTGCCCCTTCAGATCCAGCAAGTCTCCTCTAAGAAATC  441
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCGGTGATTGCCCCTTCAGATCCAGCAAGTCTCCTCTAAGAAATC  445

seq1  ACGGTTTCTGACTCAAGGCTGTGAGAATGATTGGGGTGTATGTCTGATGA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTTTCTGACTCAAGGCTGTGAGAATGATTGGGGTGTATGTCTGATGA  495

seq1  GTTTTCAGTCTGTGCTCTTACTTTACATAGGAGGCACACTGTTGCTGGAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAGTCTGTGCTCTTACTTTACATAGGAGGCACACTGTTGCTGGAA  545

seq1  TATTTGAGTACATTGTAAATATAAAACAAATAAAATAAATTAATTTGCAG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAGTACATTGTAAATATAAAACAAATAAAATAAATTAATTTGCAG  595

seq1  GACATCCATATGTATGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCCATATGTATGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTG  645

seq1  TGTGTGTGTATATATATATATATATATATATATATATATATATATATATT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTATATATATATATATATATATATATATATATATATATATATT  695

seq1  CATTTTTTAAAAAAATCTATTGCATTTGAAACATAACATCCTCAAATTCC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTAAAAAAATCTATTGCATTTGAAACATAACATCCTCAAATTCC  745

seq1  TAAACAGATAAATAGGTCTGAGTTCAAGTTTGAAATGCAGTATTTACCAG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGATAAATAGGTCTGAGTTCAAGTTTGAAATGCAGTATTTACCAG  795

seq1  TTTATATCTGAATATCTGAAAATATCTGCTTTGTGTTCTAAGTATTTGTC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATCTGAATATCTGAAAATATCTGCTTTGTGTTCTAAGTATTTGTC  845

seq1  TGATCCTAAAATTAGCAAAATGCATGCCAGAGGAACTAAAAAATAATCCA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTAAAATTAGCAAAATGCATGCCAGAGGAACTAAAAAATAATCCA  895

seq1  CATGCAGAAAATAGAATTTTTCCTCATATAATGCCAAAAATAGTTTGAGA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGAAAATAGAATTTTTCCTCATATAATGCCAAAAATAGTTTGAGA  945

seq1  AACTCCTTATTCCATTATGTTTCTAAATACGTTTGAATGTCCAGGACATA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTTATTCCATTATGTTTCTAAATACGTTTGAATGTCCAGGACATA  995

seq1  CTATTTAGTTTTGAGGATAACCAAATGTTTGATTCTAAAATAGGCAACAT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTAGTTTTGAGGATAACCAAATGTTTGATTCTAAAATAGGCAACAT  1045

seq1  TATGATTGGTTACAATTTACTAGTGATAATATTTAGAAAAATTTCTTTGT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTGGTTACAATTTACTAGTGATAATATTTAGAAAAATTTCTTTGT  1095

seq1  TGGAACTGGAAGAGCCCATGTCTATAACAGATAGTGGGCTGCTTTAGAGA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTGGAAGAGCCCATGTCTATAACAGATAGTGGGCTGCTTTAGAGA  1145

seq1  ATTC  1145
      ||||
seq2  ATTC  1149


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