BAC Information

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BAC

Clone NameB6Ng01-262J04
Chromosome16 (Build37)
Map Location 81,365,421 - 81,366,493
singlet/doubletsinglet
Overlap geneNcam2
Upstream geneLOC621365, LOC100039724
Downstream geneLOC621470, LOC435484, Pgk1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262J04.bB6Ng01-262J04.g
ACCGA066953GA066954
length1,0671,211
definitionB6Ng01-262J04.b B6Ng01-262J04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccataaattcattctttttaatagctgagtagtactccattgcgt
aaatgtaccacattttctgtatccattcctttactgagggacatctgtgt
tctttccagcatctggctattataaataaggctgctatgaacatagtgga
gcatgtgtccttcttaccagttcttttcaaagaggtatttcctttgggca
tcagtgaccttgataatccaggcctcatttaaaagatatatcactagcag
agggaatgaaggtgaatttccttcatgagtttcaaaagattggaaaacag
attagaaaaatatccatgagaatacatatatctggtgtgatagcatgcag
cctatgtcttattttgtggaaactttgccatgtctgtttgcttgtcctct
taggtaattctgagtcttattctatagtggtgtatgtgagatattaatgt
attttcccatccattctattaaatgaaatcctttaacttggcactttgaa
cactacaaggcatttaattcaatggtctatgcactctaataatggccatt
taaataatacaattcacatgtaattacatcatacatttaaactcgaaaag
ttcttttgggctccaaacttcttcaaatgatatatatatatatatatata
tatatatatatatataaattattttctcttttttctaattgacagtatag
ccaatctaatgattaaaaatgagtaaggagtgggaaagaataagaactta
aggtaattttgagaatggaccaactccgctgacagatcaaataactattc
tcctgaaactgtagtttgacctcaaataacagtgccctgaaagcacactt
tgaaaagggctctttcctttgaataacaatgagatggacttgcattgatg
tcaacactgggtaccaggaaacaccaggcactagttctcagaactctcat
gactcatgtcgaccaaaccccagcagtggttctgagaattccaaattaga
aaacaacataccaggagaaagtcaaatttctgtcatatttcatagtggct
actggctttttattgta

gaattccctgcttccagaaatcttcaacataagaaagcaggtactgatat
catcaaaggggtctagggtccatccctatttggcagacaatcacataagt
attgctcaagtggtactgtttttggtggtatgaaagtttcaagaatgaag
gacacacagaatcttcttgtatgatttcagaaaagacttaaggccagcta
atagtggtagagatccactgcagtactctgagaagtcatttctggacagg
gaaccttgatttagatgctgactatgagatgctggagatgtcagggctgt
gagatgtctgtcaaggatggatacacacaagcattaaatctagcataatg
gagagatccatgtttgtgctgactgtcttggttctttttaaccttagaca
gtcttgaccacatagaactgtttcaggcagcaaagctttaggggaagagc
catggaatcccctttacattggtaataatctaaaaagattttgttttagc
tcctctaggtctccaatttgctttggctgagtgttcccagattgtacttg
gaaatttaattctatggtttttagaaggaagtttttatgcttatagaatt
tgcaagatgtcacaattaagattctgtcttgattttcagaagagactttg
gactttcaaacagtatcaaaaatgctatgtactacgagacacttaaaatt
tgattacattcattatgcattatgatatcaccatgatccttcaaaagctc
attgtataatggccatgagttagaatcatgacactgtaggctcacgtgct
tgaacatttgtccccagctggtaacactgttcgaggaggacattcagcct
tattgaaggaagtacacagctataggtgggattttgagagtttatagtct
tgtgcaaattccaattccaggttcaagaagtgatcttttatctttgtatt
catactttcctacctgacacttgatgatatgattatgtctgctagccatg
aagaactcctatgttttcacagccatagcttcttaaataaaatacttctt
tcaatttatcaaggcaaaagaaaagcaacaacacagttatagcaaaacag
atccttttctagtacaaatatttcctgacctcaaaacagtctccctggtg
cgaacctgggatgaactaaagtatcttatggtgatggcccagaccgtgtg
gccctcctcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_81365421_81366493
seq2: B6Ng01-262J04.b_44_1110

seq1  GAATTCCATAAATTCATTCTTTTTAATAGCTGAGTAGTACTCCATTGCGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAAATTCATTCTTTTTAATAGCTGAGTAGTACTCCATTGCGT  50

seq1  AAATGTACCACATTTTCTGTATCCATTCCTTTACTGAGGGACATCTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTACCACATTTTCTGTATCCATTCCTTTACTGAGGGACATCTGTGT  100

seq1  TCTTTCCAGCATCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCAGCATCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGA  150

seq1  GCATGTGTCCTTCTTACCAGTTCTTTTCAAAGAGGTATTTCCTTTGGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGTCCTTCTTACCAGTTCTTTTCAAAGAGGTATTTCCTTTGGGCA  200

seq1  TCAGTGACCTTGATAATCCAGGCCTCATTTAAAAGATATATCACTAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGACCTTGATAATCCAGGCCTCATTTAAAAGATATATCACTAGCAG  250

seq1  AGGGAATGAAGGTGAATTTCCTTCATGAGTTTCAAAAGATTGGAAAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATGAAGGTGAATTTCCTTCATGAGTTTCAAAAGATTGGAAAACAG  300

seq1  ATTAGAAAAATATCCATGAGAATACATATATCTGGTGTGATAGCATGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAAAATATCCATGAGAATACATATATCTGGTGTGATAGCATGCAG  350

seq1  CCTATGTCTTATTTTGTGGAAACTTTGCCATGTCTGTTTGCTTGTCCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGTCTTATTTTGTGGAAACTTTGCCATGTCTGTTTGCTTGTCCTCT  400

seq1  TAGGTAATTCTGAGTCTTATTCTATAGTGGTGTATGTGAGATATTAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAATTCTGAGTCTTATTCTATAGTGGTGTATGTGAGATATTAATGT  450

seq1  ATTTTCCCATCCATTCTATTAAATGAAATCCTTTAACTTGGCACTTTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCCATCCATTCTATTAAATGAAATCCTTTAACTTGGCACTTTGAA  500

seq1  CACTACAAGGCATTTAATTCAATGGTCTATGCACTCTAATAATGGCCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACAAGGCATTTAATTCAATGGTCTATGCACTCTAATAATGGCCATT  550

seq1  TAAATAATACAATTCACATGTAATTACATCATACATTTAAACTCGAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATACAATTCACATGTAATTACATCATACATTTAAACTCGAAAAG  600

seq1  TTCTTTTGGGCTCCAAACTTCTTCAAATGATATATATATATATATATATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTGGGCTCCAAACTTCTTCAAATGATATATATATATATATATATA  650

seq1  TATATATATATATATAAATTATTTTCTCTTTTTTCTAATTGACAGTATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATAAATTATTTTCTCTTTTTTCTAATTGACAGTATAG  700

seq1  CCAATCTAATGATTAAAAATGAGTAAGGAGTGGGAAAGAATAAGAACTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCTAATGATTAAAAATGAGTAAGGAGTGGGAAAGAATAAGAACTTA  750

seq1  AGGTAATTTTGAGAATGGACCAACTCCGCTGACAGATCAAATAACTATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAATTTTGAGAATGGACCAACTCCGCTGACAGATCAAATAACTATTC  800

seq1  TCCTGAAACTGTAGTTTGACCTCAAATAACAGTGCCCTGAAAGCACACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAACTGTAGTTTGACCTCAAATAACAGTGCCCTGAAAGCACACTT  850

seq1  TGAAAAGGGCTCTTTCCTTTGAATAACAATGAGATGGACTTGCATTGATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGGGCTCTTTCCTTTGAATAACAATGAGATGGACTTGCATTGATG  900

seq1  TCAACACTGGGTACCAGGAAACACCAGGCACTAGTTCTCAGAACTCTCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACACTGGGTACCAGGAAACACCAGGCACTAGTTCTCAGAACTCTCAT  950

seq1  GACTCATGTCGACCAAACCCCAGCAGTGGGTTCTGAGAATTCCAAATTAG  1000
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GACTCATGTCGACCAAACCCCAGCAGT-GGTTCTGAGAATTCCAAATTAG  999

seq1  AAAACAACATACCAGGAAGAAAGTTAAATTTTCTGTCATATTTCATTAGT  1050
      |||||||||||||||| ||||||| ||| |||||||||||||||| ||||
seq2  AAAACAACATACCAGG-AGAAAGTCAAA-TTTCTGTCATATTTCA-TAGT  1046

seq1  GGCTTAACTGGCTTTTTATTGTA  1073
      ||||  |||||||||||||||||
seq2  GGCT--ACTGGCTTTTTATTGTA  1067


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