BAC Information

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BAC

Clone NameB6Ng01-262L19
Chromosome16 (Build37)
Map Location 87,367,136 - 87,480,731
singlet/doubletdoublet
Overlap geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16
Upstream genenone
Downstream geneCct8, B130034C11Rik, LOC435486, ORF63, Bach1, LOC100039901, Grik1, EG622373
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262L19.bB6Ng01-262L19.g
ACCGA067074GA067075
length1,1141,100
definitionB6Ng01-262L19.b B6Ng01-262L19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,479,614 - 87,480,731)(87,367,136 - 87,368,254)
sequence
gaattccagacaccaaaacattttacgatatctttgagaactttcacatc
agcaggatgcctggaggtacttggcatatctcccttcataagaaatgacc
acaatgagaggaaacacggtttgctcagagactatcagaaacagtattag
gcctatggattttggcttgcttgccattgtctgctctaaaattaaatccc
taaaagcaacattacttattctttatattattttacatgtaaagaaatga
ctttagggagctggcaagatggctcagtggtaagagcactgactgctctt
ccaaagattgtgagttcaaatcccagaacatggtagctcacaactacccg
aattagatctaatgccctcttctggcatgtctgaagacagttacagtgta
cttatgtataataataaataaatcttgagagagagagaaagaaggaagga
aggaaggaagaagaaaaagagaaagaaagaactttagaatacttcaactg
caatgaaaatcttcaacagtctgtgacactgtactccctttcaatccatg
ccatgcagtttttttttctttttactaacacaattacaagcatgagagta
cttgtgactctccaaacccagatgtgataattcacaattattctacctgc
aaaatacacactttaatatcaacttttacaacaagaaaaataaatacctt
ttatatttgcctttggtccattacactgccgtcttgaacacacttcacaa
agcagtttattggcatcttgaagtttctcattccgggtgaactgatataa
gcaatgttgaatggaacactcatcagtactaaacgcttctcggttcgcga
gggtacagaaagcagtttctgggtcctcgttcatgacctcatataccttg
ggtgcagaatgactgtcattcggaatctctatattatttcatcaggatca
cagcagcattcaattaaggttttttaaaccattgataatgtctagttctc
cactggtcctttcttccaggatgcacattgaatccctaggacattcagga
gcaagcgtccacatcccagatcacctcctcggtgttagcacttttcacct
cttaggtcttctgg
gaattcatttatactctggacactgttaggattcagctcgtccaaatttt
cattgacctttcccataaagaatatatggtagagactgacaccaaccagc
taaaacttgatcacctgttataataacaaggttacataatgattctgtgt
agtcggaagtgggctagcactacaaactaggcccttgagggctggagaga
tggctcattgactgctcttccagaggtcccgagttcaattcccagcaacc
acatagtggctcacaacaatctgtaattgtatctgatgccctctttttgt
gtatctgaagatagcaacagtgtactcatatagataaataaatcttaaaa
aaaaaaaaccaaaaaactaggcccttacgtctgtcagaatcctcggacct
tcataaagttgtgtcccagatctcccaggtccaagcttgaggtaacaaac
atttgcctggcttacactgtttaatcagaggaattttttgtgtttatctt
cctactaaattgctcagtgatcatggatatcaccaaatgatttaattgaa
ttttacttttatttttcattttagaggaaatctttaaaacaatgaagaca
agaggtctgcaagggaccacagcactttgcaggcaagcaggccaagaagc
cctgtcagtcctcaggttcagcaagtcctagtgtcctgaaagccacagaa
gtaaacaagagctgccggcagctgaacaatcgctcagtaggtttcagact
gatgccattgcctggccaagaaattttattagaaatctgtcatttaaaaa
aaaaaaaaaaagtggagccagggtggtggtggcacacacctctaattcca
gcactctggagacagaggcggagaatccctgaattcaaggccagccgaaa
tgcagagtgagttccaggacagtcagggctgcacagagaaaccctgtctc
aaaacctaaaccaaccaaacaagtgaagaaaggcaagaaaccgtgaggct
gatggatagattgctcagagctgaaacactgacggctagtacaagatggg
gctcagttcctcagcaccacatgtagggtagtccaagggatctgctattc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_87479614_87480731
seq2: B6Ng01-262L19.b_48_1161 (reverse)

seq1  CCAGAGGACCTAGGA-GTGAAAAGTGCTAACACCGAG--AGTGATCTGGG  47
      ||||| |||||| || |||||||||||||||||||||   ||||||| ||
seq2  CCAGAAGACCTAAGAGGTGAAAAGTGCTAACACCGAGGAGGTGATCT-GG  49

seq1  GATTGTGACGCCTGCTCCTGAATGTCCTAGGGATTTCAATGGTGCCTTCC  97
      |||   ||||| ||||||||||||||||||||| |||||| ||| | |||
seq2  GATGTGGACGCTTGCTCCTGAATGTCCTAGGGA-TTCAAT-GTG-CATCC  96

seq1  TGGAAGAAAGGACCAGTGGAGAACTAGACATTATCAATGGTTTAAAAAAC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAAAGGACCAGTGGAGAACTAGACATTATCAATGGTTTAAAAAAC  146

seq1  CTTAATTTGAATGCTGCTGTTGATCCTGATGAAATAAATATAGAGATTCC  197
      ||||| ||||||||||||| ||||||||||||||| ||||||||||||||
seq2  CTTAA-TTGAATGCTGCTG-TGATCCTGATGAAAT-AATATAGAGATTCC  193

seq1  GAATGACAGTCATTCTGCACCCAAGGTATATGAGGTCATGAACGAGGACC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGACAGTCATTCTGCACCCAAGGTATATGAGGTCATGAACGAGGACC  243

seq1  CAGAAACTGCTTTCTGTACCCTCGCGAACCGAGAAGCGTTTAGTACTGAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACTGCTTTCTGTACCCTCGCGAACCGAGAAGCGTTTAGTACTGAT  293

seq1  GAGTGTTCCATTCAACATTGCTTATATCAGTTCACCCGGAATGAGAAACT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTCCATTCAACATTGCTTATATCAGTTCACCCGGAATGAGAAACT  343

seq1  TCAAGATGCCAATAAACTGCTTTGTGAAGTGTGTTCAAGACGGCAGTGTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGATGCCAATAAACTGCTTTGTGAAGTGTGTTCAAGACGGCAGTGTA  393

seq1  ATGGACCAAAGGCAAATATAAAAGGTATTTATTTTTCTTGTTGTAAAAGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACCAAAGGCAAATATAAAAGGTATTTATTTTTCTTGTTGTAAAAGT  443

seq1  TGATATTAAAGTGTGTATTTTGCAGGTAGAATAATTGTGAATTATCACAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTAAAGTGTGTATTTTGCAGGTAGAATAATTGTGAATTATCACAT  493

seq1  CTGGGTTTGGAGAGTCACAAGTACTCTCATGCTTGTAATTGTGTTAGTAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTTGGAGAGTCACAAGTACTCTCATGCTTGTAATTGTGTTAGTAA  543

seq1  AAAGAAAAAAAAACTGCATGGCATGGATTGAAAGGGAGTACAGTGTCACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAAAAAACTGCATGGCATGGATTGAAAGGGAGTACAGTGTCACA  593

seq1  GACTGTTGAAGATTTTCATTGCAGTTGAAGTATTCTAAAGTTCTTTCTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTGAAGATTTTCATTGCAGTTGAAGTATTCTAAAGTTCTTTCTTT  643

seq1  CTCTTTTTCTTCTTCCTTCCTTCCTTCCTTCTTTCTCTCTCTCTCAAGAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTCTTCTTCCTTCCTTCCTTCCTTCTTTCTCTCTCTCTCAAGAT  693

seq1  TTATTTATTATTATACATAAGTACACTGTAACTGTCTTCAGACATGCCAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTATTATACATAAGTACACTGTAACTGTCTTCAGACATGCCAG  743

seq1  AAGAGGGCATTAGATCTAATTCGGGTAGTTGTGAGCTACCATGTTCTGGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGCATTAGATCTAATTCGGGTAGTTGTGAGCTACCATGTTCTGGG  793

seq1  ATTTGAACTCACAATCTTTGGAAGAGCAGTCAGTGCTCTTACCACTGAGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAACTCACAATCTTTGGAAGAGCAGTCAGTGCTCTTACCACTGAGC  843

seq1  CATCTTGCCAGCTCCCTAAAGTCATTTCTTTACATGTAAAATAATATAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGCCAGCTCCCTAAAGTCATTTCTTTACATGTAAAATAATATAAA  893

seq1  GAATAAGTAATGTTGCTTTTAGGGATTTAATTTTAGAGCAGACAATGGCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGTAATGTTGCTTTTAGGGATTTAATTTTAGAGCAGACAATGGCA  943

seq1  AGCAAGCCAAAATCCATAGGCCTAATACTGTTTCTGATAGTCTCTGAGCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCCAAAATCCATAGGCCTAATACTGTTTCTGATAGTCTCTGAGCA  993

seq1  AACCGTGTTTCCTCTCATTGTGGTCATTTCTTATGAAGGGAGATATGCCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGTGTTTCCTCTCATTGTGGTCATTTCTTATGAAGGGAGATATGCCA  1043

seq1  AGTACCTCCAGGCATCCTGCTGATGTGAAAGTTCTCAAAGATATCGTAAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCTCCAGGCATCCTGCTGATGTGAAAGTTCTCAAAGATATCGTAAA  1093

seq1  ATGTTTTGGTGTCTGGAATTC  1118
      |||||||||||||||||||||
seq2  ATGTTTTGGTGTCTGGAATTC  1114

seq1: chr16_87367136_87368254
seq2: B6Ng01-262L19.g_66_1165

seq1  GAATTCATTTATACTCTGGACACTGTTAGGATTCAGCTCGTCCAAATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTATACTCTGGACACTGTTAGGATTCAGCTCGTCCAAATTTT  50

seq1  CATTGACCTTTCCCATAAAGAATATATGGTAGAGACTGACACCAACCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGACCTTTCCCATAAAGAATATATGGTAGAGACTGACACCAACCAGC  100

seq1  TAAAACTTGATCACCTGTTATAATAACAAGGTTACATAATGATTCTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTTGATCACCTGTTATAATAACAAGGTTACATAATGATTCTGTGT  150

seq1  AGTCGGAAGTGGGCTAGCACTACAAACTAGGCCCTTGAGGGCTGGAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGGAAGTGGGCTAGCACTACAAACTAGGCCCTTGAGGGCTGGAGAGA  200

seq1  TGGCTCATTGACTGCTCTTCCAGAGGTCCCGAGTTCAATTCCCAGCAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCATTGACTGCTCTTCCAGAGGTCCCGAGTTCAATTCCCAGCAACC  250

seq1  ACATAGTGGCTCACAACAATCTGTAATTGTATCTGATGCCCTCTTTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTGGCTCACAACAATCTGTAATTGTATCTGATGCCCTCTTTTTGT  300

seq1  GTATCTGAAGATAGCAACAGTGTACTCATATAGATAAATAAATCTTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGAAGATAGCAACAGTGTACTCATATAGATAAATAAATCTTAAAA  350

seq1  AAAAAAAACCAAAAAACTAGGCCCTTACGTCTGTCAGAATCCTCGGACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACCAAAAAACTAGGCCCTTACGTCTGTCAGAATCCTCGGACCT  400

seq1  TCATAAAGTTGTGTCCCAGATCTCCCAGGTCCAAGCTTGAGGTAACAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAGTTGTGTCCCAGATCTCCCAGGTCCAAGCTTGAGGTAACAAAC  450

seq1  ATTTGCCTGGCTTACACTGTTTAATCAGAGGAATTTTTTGTGTTTATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCCTGGCTTACACTGTTTAATCAGAGGAATTTTTTGTGTTTATCTT  500

seq1  CCTACTAAATTGCTCAGTGATCATGGATATCACCAAATGATTTAATTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTAAATTGCTCAGTGATCATGGATATCACCAAATGATTTAATTGAA  550

seq1  TTTTACTTTTATTTTTCATTTTAGAGGAAATCTTTAAAACAATGAAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTTTATTTTTCATTTTAGAGGAAATCTTTAAAACAATGAAGACA  600

seq1  AGAGGTCTGCAAGGGACCACAGCACTTTGCAGGCAAGCAGGCCAAGAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCTGCAAGGGACCACAGCACTTTGCAGGCAAGCAGGCCAAGAAGC  650

seq1  CCTGTCAGTCCTCAGGTTCAGCAAGTCCTAGTGTCCTGAAAGCCACAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCAGTCCTCAGGTTCAGCAAGTCCTAGTGTCCTGAAAGCCACAGAA  700

seq1  GTAAACAAGAGCTGCCGGCAGCTGAACAATCGCTCAGTAGGTTTCAGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACAAGAGCTGCCGGCAGCTGAACAATCGCTCAGTAGGTTTCAGACT  750

seq1  GATGCCATTGCCTGGCCAAGAAATTTTATTAGAAATCTGTCATTTAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCATTGCCTGGCCAAGAAATTTTATTAGAAATCTGTCATTTAAAAA  800

seq1  AAAAAAAAAAAGTGGAGCCA-GGTGGTGGTGGCACACACCTCTAATTCCA  849
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAGTGGAGCCAGGGTGGTGGTGGCACACACCTCTAATTCCA  850

seq1  GCACTCTGGAGACAGAGGCGGAGAATCCCTGAATTCAAGGCCAGCCGAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCTGGAGACAGAGGCGGAGAATCCCTGAATTCAAGGCCAGCCGAAA  900

seq1  TGCAGAGTGAGTTCCAGGACAGTCAGGGCTGCACAGAGAAACCCTGTCTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGTGAGTTCCAGGACAGTCAGGGCTGCACAGAGAAACCCTGTCTC  950

seq1  AAAAACCTAAAACCAACCAAACCAAAGTGAAAAGAAAAGGCAAGAAACCC  999
       ||||||| |||||||||||||  |||||||    |||||||||||| ||
seq2  -AAAACCT-AAACCAACCAAAC--AAGTGAA---GAAAGGCAAGAAA-CC  992

seq1  GTGAGGGCTGAATGGATAGATGGCTCAGAGGCTGAGACACTGACCGCTAG  1049
      |||| ||||| |||||||||| ||||||| ||||| |||||||| |||||
seq2  GTGA-GGCTG-ATGGATAGATTGCTCAGA-GCTGAAACACTGACGGCTAG  1039

seq1  TACAAAGGATTGGGGCTCAGTT-CTCAGCACCCACATGGTAGGGTAGTTC  1098
      |||||  || |||||||||||| ||||||| |||||| ||||||||||  
seq2  TACAA--GA-TGGGGCTCAGTTCCTCAGCA-CCACAT-GTAGGGTAGT--  1082

seq1  ACAAGGGATCCTGCCCTATTC  1119
       |||||||| |||  ||||||
seq2  CCAAGGGAT-CTG--CTATTC  1100