BAC Information

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BAC

Clone NameB6Ng01-264G17
Chromosome16 (Build37)
Map Location 66,543,990 - 66,545,135
singlet/doubletsinglet
Overlap genenone
Upstream geneChmp2b, EG383186, Vgll3, LOC664846, LOC100039035
Downstream geneCadm2, 9330155M09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264G17.bB6Ng01-264G17.g
ACCGA068330GA068331
length1,2201,132
definitionB6Ng01-264G17.b B6Ng01-264G17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttggttctccatccaaggtaattgaaagtttggctgggtatag
tagcctgggctggcatttgtgttctcttattgtctgtatcacatctatcc
aggatcttctggctttcatagtctctggtgaaaaatctggtgtaattctg
ataggcctgcctttatattttacttgacccttttcccttactgcttttaa
tattctatctttatttagtgcatttgttgttctgattattatgtgtcggg
aggaatttcttttctggtccaatctatttggagttctgtaggcttcttgt
atgttcatgggcatctctttctttaggtttggggagttttcttctataat
tttgttgaagatatttgctggccctttaaattgaaaatcttagttctcat
ctattccgattattcataggtttggtcttctcattgtgtcctggatttcc
tggatattttgagttaggatctttttgcattttgcactgtctttgattgt
tgtgctgatgttctctatggaatcttctgctcctgagattctttctttca
tctcttgtattctgttccttatgctcgcacctgtggttccagatttcttt
cctaggttttctatctccagtgttgcctcactttgggttttctttattgt
gtccacttccctttttaggtctagtatggttttgttcatttccatcatct
gtttggatgtgttttcctctttttctttaaggacttgtaattctttagca
gtgttctcctgtatttcattaagtgagttaataaagtccttcttgatgtc
ctccaccatcatcatgagatatgcctttaaatccggttctagtttttcag
gtgtgttgaggtacccaggactggctgaggtgggagtactaggttctgat
gatggtgagtggtcttggtttttgttagtaagattcttatgtctgccttt
ccgccatctggttaatctctggagtcagttgttaatagttgtcttctggt
tagaccttggttctttttgcaatcctgatagcctctaccagcagacatgg
gagactagctcctctcctgagtttcagttgatagagcactctctgcagca
gcctcttcctttgcagaagaatgtgcacagatatctgttgttcgaacttg
gccctctgtgccaaaatgatcctgaacagtgggttccagagctgttagct
ttgatatcacacctacttca

gaattctattgccatcaaaaaactgggtgactctattgcttatcttatct
catacacatatatttattttggatatgttgaagatatctaatcatacctt
aaaaaagaattaaattatgatctcaaaagaagtctttctttgtttctatt
catcacagaggagagttgttcttgttactaagctcataattaaagataca
gcctcagctgaatatcagtatagctgtgcttttccttatatagaaaccac
aatggtagtcttttgtagtattgttaatatacaatacatataaaatgata
gattttatttaaaaagtgatatgcctttagctggctttgcttgaatcaat
caactttcatctgagtctgatgcttctctgaaaagaaagtcaactttttt
aaagaacattaaatctataggagaaatatagagcctgctaattattttct
gtgatgataaattctaaagaaatagatttatactcattaaaatatgaagc
tttctagaaggtggattagttgcttttctatgccatattttagaggtaaa
ataggaatgcagatggctcagagtagctgtccataagagtcaggcttcac
atattcacaaggaatttggtagtactgaaggatactttgagagtttataa
tatctgcttattttacaggtaagtaacgacatcagaaagacacagctagt
tcaaattaaaggcaagtttcgagtctctatctaggttgaattaaattcag
tgtcagtccctagatgatttctattattctctgttactaaagcaccaaga
ggagaaaacagatgttatgaaacaaagaacattaaatgcaaagaaagaaa
agaactcagataaaaatatacatcaaagcttgattttgcttcaagcatgt
ggagattaaataaaatgttcaaactttctttctttataataggcttccat
aatcatccaaaaaacactgtggccaccgccagttgatctgcacttacccc
aaatggtcttcaatgcttgatttttagttctcctcccaccccacccccct
tcagtctcaatcactgactctctagcttactcttctatttcacagaaaat
attttttgtacaattaggccagagagcatggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_66543990_66545135
seq2: B6Ng01-264G17.g_66_1197

seq1  GAATTCTATTGCCATCAAAAAACTGGGTGACTCTATTGCTTATCTTATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTGCCATCAAAAAACTGGGTGACTCTATTGCTTATCTTATCT  50

seq1  CATACACATATATTTATTTTGGATATGTTGAAGATATCTAATCATACCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACATATATTTATTTTGGATATGTTGAAGATATCTAATCATACCTT  100

seq1  AAAAAAGAATTAAATTATGATCTCAAAAGAAGTCTTTCTTTGTTTCTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAATTAAATTATGATCTCAAAAGAAGTCTTTCTTTGTTTCTATT  150

seq1  CATCACAGAGGAGAGTTGTTCTTGTTACTAAGCTCATAATTAAAGATACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACAGAGGAGAGTTGTTCTTGTTACTAAGCTCATAATTAAAGATACA  200

seq1  GCCTCAGCTGAATATCAGTATAGCTGTGCTTTTCCTTATATAGAAACCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGCTGAATATCAGTATAGCTGTGCTTTTCCTTATATAGAAACCAC  250

seq1  AATGGTAGTCTTTTGTAGTATTGTTAATATACAATACATATAAAATGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTAGTCTTTTGTAGTATTGTTAATATACAATACATATAAAATGATA  300

seq1  GATTTTATTTAAAAAGTGATATGCCTTTAGCTGGCTTTGCTTGAATCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTATTTAAAAAGTGATATGCCTTTAGCTGGCTTTGCTTGAATCAAT  350

seq1  CAACTTTCATCTGAGTCTGATGCTTCTCTGAAAAGAAAGTCAACTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTCATCTGAGTCTGATGCTTCTCTGAAAAGAAAGTCAACTTTTTT  400

seq1  AAAGAACATTAAATCTATAGGAGAAATATAGAGCCTGCTAATTATTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACATTAAATCTATAGGAGAAATATAGAGCCTGCTAATTATTTTCT  450

seq1  GTGATGATAAATTCTAAAGAAATAGATTTATACTCATTAAAATATGAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGATAAATTCTAAAGAAATAGATTTATACTCATTAAAATATGAAGC  500

seq1  TTTCTAGAAGGTGGATTAGTTGCTTTTCTATGCCATATTTTAGAGGTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGAAGGTGGATTAGTTGCTTTTCTATGCCATATTTTAGAGGTAAA  550

seq1  ATAGGAATGCAGATGGCTCAGAGTAGCTGTCCATAAGAGTCAGGCTTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAATGCAGATGGCTCAGAGTAGCTGTCCATAAGAGTCAGGCTTCAC  600

seq1  ATATTCACAAGGAATTTGGTAGTACTGAAGGATACTTTGAGAGTTTATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCACAAGGAATTTGGTAGTACTGAAGGATACTTTGAGAGTTTATAA  650

seq1  TATCTGCTTATTTTACAGGTAAGTAACGACATCAGAAAGACACAGCTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCTTATTTTACAGGTAAGTAACGACATCAGAAAGACACAGCTAGT  700

seq1  TCAAATTAAAGGCAAGTTTCGAGTCTCTATCTAGGTTGAATTAAATTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTAAAGGCAAGTTTCGAGTCTCTATCTAGGTTGAATTAAATTCAG  750

seq1  TGTCAGTCCCTAGATGATTTCTATTATTCTCTGTTACTAAAGCACCAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTCCCTAGATGATTTCTATTATTCTCTGTTACTAAAGCACCAAGA  800

seq1  GGAGAAAACAGATGTTATGAAACAAAGAACATTAAATGCAAAGAAAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAACAGATGTTATGAAACAAAGAACATTAAATGCAAAGAAAGAAA  850

seq1  AGAACTCAGATAAAAATATACATCAAAGCTTGATTTTGCTTCAAGCATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCAGATAAAAATATACATCAAAGCTTGATTTTGCTTCAAGCATGT  900

seq1  GGAGATTAAATAAAATGTTCAAACTTTCTTTCTTTATAATAGGCTTCCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATTAAATAAAATGTTCAAACTTTCTTTCTTTATAATAGGCTTCCAT  950

seq1  AAATCATCCAAAAAACACTGTGGCCACCGCCAAGTTGATCTGCACTTACC  1000
       |||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  -AATCATCCAAAAAACACTGTGGCCACCGCC-AGTTGATCTGCACTTACC  998

seq1  CCAAATGGTCTTCAAATGCTTGATTTTTAGTTCTTCCTCCCCACCCCACC  1050
      ||||||||||||| ||||||||||||||||||| |||| ||||||||| |
seq2  CCAAATGGTCTTC-AATGCTTGATTTTTAGTTC-TCCT-CCCACCCCA-C  1044

seq1  CCCCCTTCAGTCCTCAAATCACTTGACTCTCTAGCTTTACTTCCTTCTTA  1100
      ||||||||||| ||| |||||| |||||||||||| |||||  |||| ||
seq2  CCCCCTTCAGT-CTC-AATCAC-TGACTCTCTAGC-TTACT--CTTC-TA  1087

seq1  TTTCACAG-AAATATTTTTGTTACAATTTTAGGGCCAGAGAG-ATGGC  1146
      |||||||| ||||||||||  |||||||    |||||||||| |||||
seq2  TTTCACAGAAAATATTTTTTGTACAATT---AGGCCAGAGAGCATGGC  1132


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