BAC Information

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BAC

Clone NameB6Ng01-265B13
Chromosome1 (Build37)16 (Build37)
Map Location 44,028,146 - 44,028,21583,707,948 - 83,709,141
singlet/doubletsingletsinglet
Overlap geneTpp2
Upstream geneGpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644, Nck2, 1500015O10Rik, Uxs1, LOC666676, LOC100042303, EG666690
Downstream geneA530098C11Rik, EG666713, 1700029F09Rik, Kdelc1, Bivm, Ercc5, 4832428D23Rik, LOC435619, Txn-ps1, Gulp1, LOC100041738, LOC100041752
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265B13.bB6Ng01-265B13.g
ACCGA068836GA068837
length6721,175
definitionB6Ng01-265B13.b B6Ng01-265B13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(44,028,146 - 44,028,215)(83,707,948 - 83,709,141)
sequence
gaattcaccagagacctgggagttgagagactcccagaactcaaagggaa
gaaccttagatgaaatgctggacagtagggagagagaaatatagagccta
cctccagtgggaagactggacatgaagtgaggaatagggttgccatccca
aagtcacgtctctgacccacaattgttcctgtctgaaagaattacaggga
tagaaatggatagaagcctgaggaaaagaaggtccagagacaggcccaaa
atagaatccagctcaaggggagttccctaggcctgacactattattgagg
ctatggagagcccacaaaaagggatctatcatgactgccctctgaaagac
ccaacaagcagctgaaagagtcagatccagatatttgcacccaaccaatg
ggcaggagctattgtcccctgttgctgaatttgggaatgctgaaagaatc
tgaggagaagggcaattctgtaggaggatcagcagtctcaattaacctgg
accctgagatctctcaaacacaagaccaccaaaaagacagcatacaccag
ctgatatgaggcctccaacacacatacagcagaggacttcccggtctgta
ttcattcagagatgaagcaactatccctcaagagacataaggccccaggg
agttagaggtcaggtggggtgg
gaattcacttcaacctccctctagcttcaagagaagttgtcactcatcct
gtctctgcttacgccacccttgtttctcattttctcagaggaattttcta
actgcattacctcaataatgaacaatcacagtttttttttccaattaact
caagtgtatgctcataactgaaacaaaagtatatttcttaaatacttgct
aacttaggggttacataattagcatatattatggataaagaaatatagat
attaccagagccaaaggagagaacagaggatagctaagtatgtttagacc
ttatggaatcacaattaaaattaaaaaatcactactgctaaaatatagat
attgtgttgatgagcttcttgtggtgagttcatagagagaaactcaccaa
cgtatttctcacgaggaacctgtggcttctttctgtttccactgactcct
gctggttggtgagccttgaagtttcttctgtattgaaatgcccttgctga
tttgtgtggtatctgccaagtggactaactgcagctgcctgttcaggttt
ggtgtttgctaatggactggactaaggacaatgaagattggaatcacccc
aaagaactatttctaaacatgtccacttcctgcatatcctaataaccttt
tcttttccactattgatgctgggtggggtgctagaggggaggttgaatcc
tataaatgtaggttcagaaacaaacaaacaaacaaacaaacaagagtgtc
acaccattcctgaacggagatctctccattatataagccatctagaaatg
taagtcaacttacccattgtgtttctgccattttcctagagttaaaactc
atataaattaatttaatttagaaaacatgggaagtcattatattatttta
ttttattgttcaatagctcactctgtattaaggtagaataagctgaaagt
aatgcatagactaaatacaaatgtgcccatgtgtcaatatgtagataaac
ttcatttcatatagagtatgactgatatgaaatagtataagtataataat
atagtatgtgataccactattggagatcagtatttaaaagcataaataaa
caatgttcttctaggttagattgtaaacatcaagtactagtaagaagtac
attatataattgaaggcaattttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_44028146_44028215
seq2: B6Ng01-265B13.b_651_716 (reverse)

seq1  CCACCCCACCTGACCTCTAAACTCCCTGGGGCCTGCAGTCTCTTGAGGGT  50
      |||||||||||||||||| |||||||||||||||   |||||||||||  
seq2  CCACCCCACCTGACCTCT-AACTCCCTGGGGCCTTATGTCTCTTGAGG--  47

seq1  TGTTAGGTGTATCATCTCTG  70
       | ||| ||  |||||||||
seq2  -GATAGTTGCTTCATCTCTG  66

seq1: chr16_83707948_83709141
seq2: B6Ng01-265B13.g_66_1240

seq1  GAATTCACTTCAACCTCCCTCTAGCTTCAAGAGAAGTTGTCACTCATCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCAACCTCCCTCTAGCTTCAAGAGAAGTTGTCACTCATCCT  50

seq1  GTCTCTGCTTACGCCACCCTTGTTTCTCATTTTCTCAGAGGAATTTTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGCTTACGCCACCCTTGTTTCTCATTTTCTCAGAGGAATTTTCTA  100

seq1  ACTGCATTACCTCAATAATGAACAATCACAGTTTTTTTTTCCAATTAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATTACCTCAATAATGAACAATCACAGTTTTTTTTTCCAATTAACT  150

seq1  CAAGTGTATGCTCATAACTGAAACAAAAGTATATTTCTTAAATACTTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTATGCTCATAACTGAAACAAAAGTATATTTCTTAAATACTTGCT  200

seq1  AACTTAGGGGTTACATAATTAGCATATATTATGGATAAAGAAATATAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAGGGGTTACATAATTAGCATATATTATGGATAAAGAAATATAGAT  250

seq1  ATTACCAGAGCCAAAGGAGAGAACAGAGGATAGCTAAGTATGTTTAGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCAGAGCCAAAGGAGAGAACAGAGGATAGCTAAGTATGTTTAGACC  300

seq1  TTATGGAATCACAATTAAAATTAAAAAATCACTACTGCTAAAATATAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGAATCACAATTAAAATTAAAAAATCACTACTGCTAAAATATAGAT  350

seq1  ATTGTGTTGATGAGCTTCTTGTGGTGAGTTCATAGAGAGAAACTCACCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTTGATGAGCTTCTTGTGGTGAGTTCATAGAGAGAAACTCACCAA  400

seq1  CGTATTTCTCACGAGGAACCTGTGGCTTCTTTCTGTTTCCACTGACTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATTTCTCACGAGGAACCTGTGGCTTCTTTCTGTTTCCACTGACTCCT  450

seq1  GCTGGTTGGTGAGCCTTGAAGTTTCTTCTGTATTGAAATGCCCTTGCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTTGGTGAGCCTTGAAGTTTCTTCTGTATTGAAATGCCCTTGCTGA  500

seq1  TTTGTGTGGTATCTGCCAAGTGGACTAACTGCAGCTGCCTGTTCAGGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTGGTATCTGCCAAGTGGACTAACTGCAGCTGCCTGTTCAGGTTT  550

seq1  GGTGTTTGCTAATGGACTGGACTAAGGACAATGAAGATTGGAATCACCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTGCTAATGGACTGGACTAAGGACAATGAAGATTGGAATCACCCC  600

seq1  AAAGAACTATTTCTAAACATGTCCACTTCCTGCATATCCTAATAACCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACTATTTCTAAACATGTCCACTTCCTGCATATCCTAATAACCTTT  650

seq1  TCTTTTCCACTATTGATGCTGGGTGGGGTGCTAGAGGGGAGGTTGAATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCACTATTGATGCTGGGTGGGGTGCTAGAGGGGAGGTTGAATCC  700

seq1  TATAAATGTAGGTTCAGAAACAAACAAACAAACAAACAAACAAGAGTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATGTAGGTTCAGAAACAAACAAACAAACAAACAAACAAGAGTGTC  750

seq1  ACACCATTCCTGAACGGAGATCTCTCCATTATATAAGCCATCTAGAAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATTCCTGAACGGAGATCTCTCCATTATATAAGCCATCTAGAAATG  800

seq1  TAAGTCAACTTACCCATTGTGTTTCTGCCATTTTCCTAGAGTTAAAACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCAACTTACCCATTGTGTTTCTGCCATTTTCCTAGAGTTAAAACTC  850

seq1  ATATAAATTAATTTAATTTAGAAAACAT-GGAAGTCATTATATTATTTTT  899
      |||||||||||||||||||||||||||| |||||||||||||||| ||||
seq2  ATATAAATTAATTTAATTTAGAAAACATGGGAAGTCATTATATTA-TTTT  899

seq1  ATTTTATTGTTCAATAGCTCACTCTGTATTAAGGTAGAATAAGCTGAAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTGTTCAATAGCTCACTCTGTATTAAGGTAGAATAAGCTGAAAG  949

seq1  TAATGCATAGACTAAATACAAATGTGCCCATGTGTCAAATTATGTAGATA  999
      ||||||||||||||||||||||||||||||||||||||  ||||||||| 
seq2  TAATGCATAGACTAAATACAAATGTGCCCATGTGTCAA--TATGTAGAT-  996

seq1  AAACTTCATTTCATATAGAGTAATGGACTGATTATGAAATAAGTATTAAG  1049
      ||||||||||||||||||||||   |||||| |||||||| |||| ||||
seq2  AAACTTCATTTCATATAGAGTA--TGACTGA-TATGAAAT-AGTA-TAAG  1041

seq1  GTTATAATAATATAGTAATGTGATA-CACTAAT-GAGATCAAGTATTTAA  1097
        |||||||||||||| |||||||| ||||| | |||||| |||||||||
seq2  --TATAATAATATAGT-ATGTGATACCACTATTGGAGATC-AGTATTTAA  1087

seq1  AAGCATAAATAACAAATGTTCTCTTAAGTGTAG-TTGTAAAACAATCAAA  1146
      ||||||||||||  ||||||||  || || ||| |||||||   ||||| 
seq2  AAGCATAAATAAACAATGTTCTTCTAGGT-TAGATTGTAAA--CATCAAG  1134

seq1  TTATCTTAGGTTATAGAAATTACCATATATAATTGACAGCAATTTTAA  1194
      |  |  || |       || |||  |||||||||||  ||||||||||
seq2  TACTAGTAAG-------AAGTACATTATATAATTGAAGGCAATTTTAA  1175