BAC Information

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BAC

Clone NameB6Ng01-266A01
Chromosome16 (Build37)
Map Location 29,969,836 - 30,123,592
singlet/doubletdoublet
Overlap geneGm1968, LOC100043102, 9030404E10Rik, Hes1
Upstream geneHrasls, Atp13a5, Atp13a4, Opa1
Downstream geneEG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44, Lsg1, BC022623, LOC100043122, AI480653, Centb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266A01.bB6Ng01-266A01.g
ACCGA069507GA069508
length1,2461,060
definitionB6Ng01-266A01.b B6Ng01-266A01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,969,836 - 29,971,061)(30,122,517 - 30,123,592)
sequence
gaattctttctcctcccagatgttctaccttctattacctgtctaagcca
tgggccatatataggctttttaattgacaggtgatgcatccaaagaatat
gtgaggtatcactctacatctatgttagggaagttcaagggaaattctca
aaggtccagaggcccttgacatagggtgatgagaggagagacgctggtcg
tcaatagaacaatggtagtgggtgacaggactgctgggtggcgtttggat
tctaagaaacctgcctttgtgaaggaattgcttttggaatcaggttcttt
ctctctagagactggcttagttaccacttagttactactgctggctgtca
gtaggtgaggctggacctgtattttgtctctcgcatgctccacatttctg
tttttcaccatgaactggttcagcaccaggtcttcatctgaagtggccat
ctgatgttggcttctagccctccagaatcatgattcaaaattaatctctt
tcctttataaatcactcagtgtcaggtgttttgttacaggaaccttgaaa
atgtttaaagatggacactaaatgggaacttgcactgtaaacttggaaga
attgatgggtggatgcatggagcacgtgatgaggaacagaagagagaaga
tgtgaagggccggagagatggctcagcaggtacttgctgtacaagtgtga
agaacagagtttgaatccccaatacatttgttaaaaacaaaaaattgtgt
tacctccatgtaaaactgagtgcaccacacatgcacacaaacactcagac
acacaggcacacacgtgtatacacacatacacatgtaaaattataattct
aaaagaaagaggaaagaagatgtggatttcctcaagagagagtgtgcaca
aagtgaaagcaaatatcgtgcagtcctgaaactaagaacgttcccgtggt
gtgtcagctctaagactgccactgaacacttggatagctacatcctgcgg
tcttcatcattttaaaatgaatcagaacctcaatggagagaaggtgtttt
tgaatgaacaatggttaagcaccaagctgcgggaacgaaaccaacgagga
gtcacaaaccagcctccacgcttgaacgtccttgaggtcattcatattct
atatctaacctatcagggccaagaatttacacgctgtaggccactcaaga
cagaagccctctcgctcgtgggccaaggaagcccatgatttttata
gaattcagctgaagttgtagaaatcagaaccgcaattgttggatctgggt
ggggtagattgcctggaatgagaaaagggactttttttttttttaaaaag
gggatgtgtgttttgttctctgtcttgactggttggtgcgttgagacatt
tatttgccaaattgaacgcagtaagcatgcctaggtatgcgtgttttgtc
tctatggtcctcaacattagaactaaaaagtcacactggcctgggctcct
ttgtattttccaggctggatatcatcagacctagagcacaggaagtggag
gtcacacgttctttagctggggcggcaggagtggggtgtttctcagacct
gtgggactgtgcacataagacccattttttttttttcacccaggcacttt
tatggatcttggtacacatttgcctctcccaagatcctcctagagtacgg
aaaaaaatgctcatctttcttgccttggcacttcagctccagtcttcttg
gctcttgttttgttctagaatccccaagtgctccagccgtgctgtttccg
aatcttcgaatcttcgccattccctcgctgggagttccagccgcacaccc
ggccttacttaaaggattgtctgacccctgccactggagtgtttcacttg
cctccagagtgactttagcaggaggaggagggcaggagccattgtctgaa
ccattaccaggttaaactttttttcttaacagaggaaaagaggaccggaa
atgtggtagaatcccacgcgggcccctgccgatgattgacagatatttaa
gcagacccggcctttgtgcggtgccatcggccgatacattaatagatata
atttgtaggcacccgaggagaggttaaaggggagagcagattcctttgag
cacacttggtgctcctgtcatctgtccccggctaatcaagtatcatatca
acgcgtgtctctgggactcggctctgttgtctgatgaggaaaaatttgca
accatttctagcagcgggagtggagctgcctgcagctgataaaagcacct
gtactagcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_29969836_29971061
seq2: B6Ng01-266A01.b_47_1292

seq1  GAATTCTTTCTCCTCCCAGATGTTCTACCTTCTATTACCTGTCTAAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTCCTCCCAGATGTTCTACCTTCTATTACCTGTCTAAGCCA  50

seq1  TGGGCCATATATAGGCTTTTTAATTGACAGGTGATGCATCCAAAGAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCATATATAGGCTTTTTAATTGACAGGTGATGCATCCAAAGAATAT  100

seq1  GTGAGGTATCACTCTACATCTATGTTAGGGAAGTTCAAGGGAAATTCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTATCACTCTACATCTATGTTAGGGAAGTTCAAGGGAAATTCTCA  150

seq1  AAGGTCCAGAGGCCCTTGACATAGGGTGATGAGAGGAGAGACGCTGGTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCCAGAGGCCCTTGACATAGGGTGATGAGAGGAGAGACGCTGGTCG  200

seq1  TCAATAGAACAATGGTAGTGGGTGACAGGACTGCTGGGTGGCGTTTGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAGAACAATGGTAGTGGGTGACAGGACTGCTGGGTGGCGTTTGGAT  250

seq1  TCTAAGAAACCTGCCTTTGTGAAGGAATTGCTTTTGGAATCAGGTTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGAAACCTGCCTTTGTGAAGGAATTGCTTTTGGAATCAGGTTCTTT  300

seq1  CTCTCTAGAGACTGGCTTAGTTACCACTTAGTTACTACTGCTGGCTGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTAGAGACTGGCTTAGTTACCACTTAGTTACTACTGCTGGCTGTCA  350

seq1  GTAGGTGAGGCTGGACCTGTATTTTGTCTCTCGCATGCTCCACATTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTGAGGCTGGACCTGTATTTTGTCTCTCGCATGCTCCACATTTCTG  400

seq1  TTTTTCACCATGAACTGGTTCAGCACCAGGTCTTCATCTGAAGTGGCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCACCATGAACTGGTTCAGCACCAGGTCTTCATCTGAAGTGGCCAT  450

seq1  CTGATGTTGGCTTCTAGCCCTCCAGAATCATGATTCAAAATTAATCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTTGGCTTCTAGCCCTCCAGAATCATGATTCAAAATTAATCTCTT  500

seq1  TCCTTTATAAATCACTCAGTGTCAGGTGTTTTGTTACAGGAACCTTGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTATAAATCACTCAGTGTCAGGTGTTTTGTTACAGGAACCTTGAAA  550

seq1  ATGTTTAAAGATGGACACTAAATGGGAACTTGCACTGTAAACTTGGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTAAAGATGGACACTAAATGGGAACTTGCACTGTAAACTTGGAAGA  600

seq1  ATTGATGGGTGGATGCATGGAGCACGTGATGAGGAACAGAAGAGAGAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATGGGTGGATGCATGGAGCACGTGATGAGGAACAGAAGAGAGAAGA  650

seq1  TGTGAAGGGCCGGAGAGATGGCTCAGCAGGTACTTGCTGTACAAGTGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGGGCCGGAGAGATGGCTCAGCAGGTACTTGCTGTACAAGTGTGA  700

seq1  AGAACAGAGTTTGAATCCCCAATACATTTGTTAAAAACAAAAAATTGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGAGTTTGAATCCCCAATACATTTGTTAAAAACAAAAAATTGTGT  750

seq1  TACCTCCATGTAAAACTGAGTGCACCACACATGCACACAAACACTCAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCCATGTAAAACTGAGTGCACCACACATGCACACAAACACTCAGAC  800

seq1  ACACAGGCACACACGTGTATACACACATACACATGTAAAATTATAATTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGCACACACGTGTATACACACATACACATGTAAAATTATAATTCT  850

seq1  AAAAGAAAGAGGAAAGAAGATGTGGATTTCCTCAAGAGAGAGTGTGCACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAGAGGAAAGAAGATGTGGATTTCCTCAAGAGAGAGTGTGCACA  900

seq1  AAGTGAAAGCAAATATCGTGCAGTCCTGAAACTAAGAACGTTCCCGTGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAAGCAAATATCGTGCAGTCCTGAAACTAAGAACGTTCCCGTGGT  950

seq1  GTGTCAGCTCTAAAGACTGCCACTGAACACTTGGATAAGCTACATCCTGC  1000
      ||||||||||| |||||||||||||||||||||||| |||||||||||||
seq2  GTGTCAGCTCT-AAGACTGCCACTGAACACTTGGAT-AGCTACATCCTGC  998

seq1  GGTCTCCATCATTTTAAAATGAATCAGAACCTC-ATGGAGAG-AGGTGTT  1048
      ||||| ||||||||||||||||||||||||||| |||||||| |||||||
seq2  GGTCTTCATCATTTTAAAATGAATCAGAACCTCAATGGAGAGAAGGTGTT  1048

seq1  TTTGAATGAACAATG--TTAGCA-CAAGCTGC-GGAACG-AACACACGAG  1093
      |||||||||||||||  | |||| |||||||| |||||| |||  |||||
seq2  TTTGAATGAACAATGGTTAAGCACCAAGCTGCGGGAACGAAACCAACGAG  1098

seq1  GAGTCACAACACAGCTTCCACGC-TGACAGTCCCTGAGGTCATTCAT-TT  1141
      |||||||||  |||| ||||||| |||  |||| ||||||||||||| ||
seq2  GAGTCACAAACCAGCCTCCACGCTTGAACGTCCTTGAGGTCATTCATATT  1148

seq1  CTA-ATCT-ACCTATCAGG--CCAGGATTTACACG-TG-AAGCCA-TCAA  1184
      ||| |||| ||||||||||  | || ||||||||| || | |||| ||||
seq2  CTATATCTAACCTATCAGGGCCAAGAATTTACACGCTGTAGGCCACTCAA  1198

seq1  GACAG-AGGCCTC-CGCT-GTGGGCCAGGGAAGCC---TAGTTTTATA  1226
      ||||| || |||| |||| |||||||| |||||||    | |||||||
seq2  GACAGAAGCCCTCTCGCTCGTGGGCCAAGGAAGCCCATGATTTTTATA  1246

seq1: chr16_30122517_30123592
seq2: B6Ng01-266A01.g_66_1125 (reverse)

seq1  TTGCTAGGTTACAGGTGCTTTTTATCCAGCCTCGCAGGGCAGCTCCAACT  50
      |||||||  ||||||||| |||||| ||||   ||| ||||||||| |||
seq2  TTGCTAG--TACAGGTGC-TTTTAT-CAGC--TGCA-GGCAGCTCC-ACT  42

seq1  CCCCGCTGCTAGAAATTTGTTTGCAAATTTTTTCCTCATTCAGAC-ACAG  99
       ||||||||||||||  || ||||||| |||||||||| |||||| ||||
seq2  -CCCGCTGCTAGAAA--TGGTTGCAAA-TTTTTCCTCA-TCAGACAACAG  87

seq1  AGCCGAGGTCCCAGAGACACCGCGTTGATATGATAACTTGATTAAGCCGG  149
      |||||| |||||||||||| |||||||||||||| |||||||| ||||||
seq2  AGCCGA-GTCCCAGAGACA-CGCGTTGATATGAT-ACTTGATT-AGCCGG  133

seq1  GGACAGATGACAGGAGCACCAAGTGTGCTCAAAGGAATCTGCTCTCCCCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGATGACAGGAGCACCAAGTGTGCTCAAAGGAATCTGCTCTCCCCT  183

seq1  TTAACCTCTCCTCGGGTGCCTACAAATTATATCTATTAATGTATCGGCCG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCTCTCCTCGGGTGCCTACAAATTATATCTATTAATGTATCGGCCG  233

seq1  ATGGCACCGCACAAAGGCCGGGTCTGCTTAAATATCTGTCAATCATCGGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACCGCACAAAGGCCGGGTCTGCTTAAATATCTGTCAATCATCGGC  283

seq1  AGGGGCCCGCGTGGGATTCTACCACATTTCCGGTCCTCTTTTCCTCTGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCCCGCGTGGGATTCTACCACATTTCCGGTCCTCTTTTCCTCTGTT  333

seq1  AAGAAAAAAAGTTTAACCTGGTAATGGTTCAGACAATGGCTCCTGCCCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAAAGTTTAACCTGGTAATGGTTCAGACAATGGCTCCTGCCCTC  383

seq1  CTCCTCCTGCTAAAGTCACTCTGGAGGCAAGTGAAACACTCCAGTGGCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCTGCTAAAGTCACTCTGGAGGCAAGTGAAACACTCCAGTGGCAG  433

seq1  GGGTCAGACAATCCTTTAAGTAAGGCCGGGTGTGCGGCTGGAACTCCCAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGACAATCCTTTAAGTAAGGCCGGGTGTGCGGCTGGAACTCCCAG  483

seq1  CGAGGGAATGGCGAAGATTCGAAGATTCGGAAACAGCACGGCTGGAGCAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGGAATGGCGAAGATTCGAAGATTCGGAAACAGCACGGCTGGAGCAC  533

seq1  TTGGGGATTCTAGAACAAAACAAGAGCCAAGAAGACTGGAGCTGAAGTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGATTCTAGAACAAAACAAGAGCCAAGAAGACTGGAGCTGAAGTGC  583

seq1  CAAGGCAAGAAAGATGAGCATTTTTTTCCGTACTCTAGGAGGATCTTGGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAAGAAAGATGAGCATTTTTTTCCGTACTCTAGGAGGATCTTGGG  633

seq1  AGAGGCAAATGTGTACCAAGATCCATAAAAGTGCCTGGGTGAAAAAAAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAAATGTGTACCAAGATCCATAAAAGTGCCTGGGTGAAAAAAAAA  683

seq1  AAATGGGTCTTATGTGCACAGTCCCACAGGTCTGAGAAACACCCCACTCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGTCTTATGTGCACAGTCCCACAGGTCTGAGAAACACCCCACTCC  733

seq1  TGCCGCCCCAGCTAAAGAACGTGTGACCTCCACTTCCTGTGCTCTAGGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGCCCCAGCTAAAGAACGTGTGACCTCCACTTCCTGTGCTCTAGGTC  783

seq1  TGATGATATCCAGCCTGGAAAATACAAAGGAGCCCAGGCCAGTGTGACTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATATCCAGCCTGGAAAATACAAAGGAGCCCAGGCCAGTGTGACTT  833

seq1  TTTAGTTCTAATGTTGAGGACCATAGAGACAAAACACGCATACCTAGGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTCTAATGTTGAGGACCATAGAGACAAAACACGCATACCTAGGCA  883

seq1  TGCTTACTGCGTTCAATTTGGCAAATAAATGTCTCAACGCACCAACCAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACTGCGTTCAATTTGGCAAATAAATGTCTCAACGCACCAACCAGT  933

seq1  CAAGACAGAGAACAAAACACACATCCCCTTTTTAAAAAAAAAAAAAGTCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACAGAGAACAAAACACACATCCCCTTTTTAAAAAAAAAAAAAGTCC  983

seq1  CTTTTCTCATTCCAGGCAATCTACCCCACCCAGATCCAACAATTGCGGTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTCATTCCAGGCAATCTACCCCACCCAGATCCAACAATTGCGGTT  1033

seq1  CTGATTTCTACAACTTCAGCTGAATTC  1076
      |||||||||||||||||||||||||||
seq2  CTGATTTCTACAACTTCAGCTGAATTC  1060