BAC Information

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BAC

Clone NameB6Ng01-266C01
Chromosome16 (Build37)
Map Location 63,597,794 - 63,715,873
singlet/doubletdoublet
Overlap geneEpha3
Upstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
Downstream geneLOC100043540, Ckt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266C01.bB6Ng01-266C01.g
ACCGA069601GA069602
length1,1291,161
definitionB6Ng01-266C01.b B6Ng01-266C01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,714,721 - 63,715,873)(63,597,794 - 63,598,981)
sequence
gaattcagcatgatataagcatttaactgtctttcttgttagaagtcttt
taggttaagtggataaaactaagaatatagatatgacaaaattatatttg
tttaacatttttttaagatttttgtcaactctcaactactatttctgaaa
aagatttcttgaatgtcattgttttggttctttttcacaaaacttaagtg
ttaattgaaaattagaaataaggtctcagacactgacatagttcagtata
ttactaatattttcccttgttgattgagtatagaaagtaatagaaaaaaa
taggtattccctctttattttctagttgttatgcacataaaatgtacatt
atgattctttagtaattcttatttcttgacatctatacacagtttttttt
tgagtagtgagaaaaaacgcaaacaaacaaaataaaaaacaccatcacca
caaacaataacaaaatccatggattttctttattttttaaggataaattt
aagtctcacaacagtgagaaaggtttactgttaactcattctgatgcctt
tggtatctccaagtgggcataagctaagttaaagaaaaagatgcatagtt
aaaagtagtaaccccacgcggagttctactgacatttatagaaagttatt
catgtctagcaacagagagctgcattcttgaatgatttttgtagaaaatt
ccttcttaattttttatggtgaggatctacaaagtatgacttctctttta
cgaatccagatacatgtgcaagcttagccgcattttgtcttcagtgttaa
gtactgtgattatttggaaaaaaaaatttcagatctctgaatttatggtc
tagtcttagtcagctggtaacagaatcaaaacaaaccgcattctgtttta
tcttcttccatgtaccttcatttatcttgatagacgatagttgactgcac
cggttgaaataaagaaaagatagaaaacagaagagaagtagagagggaga
aataggaaagagaatgaggacagcagtataaataccagaaatgataactg
ccagaatacacaggtagaaagccattgagtgggtttgttgtacttagaat
agattcaatgtactatcttcaaatataat

gaattcaataaatgaaaggcagccatggtctgagagtctgtaagtctggc
acctttgaaataattacattccattaagtgctgtatttatttattgcctg
tctttgatcatgaaatcagaaaatgcctgtctccacagtagtacacctac
taacaagctcatgttcctgctgtagcgttcttactgttagtttggtagga
gaactattggcatgctagttacctgctccaacaactttgtcgatggatat
attggtggcatccaactccttcgcgaactcatgaactgcttgagtagggt
cttcatatgtatgtggatcaacataggtcctgagacctggaagttttact
gtcaacaaaaagaaaagcatgattttactgagcaaatttcaaaatcttac
tcgctaaaaaaaatctctatcacactaatttgtatcgatctgtaggctac
tctgtaatattaaaaaaaaaatctcatggagatatattaattgtaagaaa
aaagttttctgcattagagtacaaagaggaagcacaataaagtatcttct
ctgctaagatcctaggaggggataatgaaatgcagatctcaggaggaaga
ggtcaatagcatgagtgggcatggtagttactaccacaaaccaacaaacc
actgtgctgctaaacacttctggttcagaggcgctggaatagccaagtat
ttttacagtacaccatatgacagaaaatcaaaattcatgaatatgctcag
gaatcagaagagagtatagagtaattaaaacactaaagagaaaacagaac
atctctgatactactgtatgtatgttgttttaagtattcacaaatgagtt
tgccatttacatggaaaatggagtttaagctttacatttgatgtgcatac
cagcatactatcagtagactgagatcatgtttgactctgaacataactaa
aggcaacataaatgctgtttaaacgcttaattgttagctgagagcaattt
taaactagtcataaatgtactcataacacaattatttattcatatctgaa
ttgaatctcattgctctctgtacaaaatatccaaaacctaacgtatcatt
tatatatcattaaatcatgaaatcggttcatttgaaacctatcctcatta
agagagaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_63714721_63715873
seq2: B6Ng01-266C01.b_47_1175 (reverse)

seq1  ATTATTTTGAAAGATAGTACATGAAATTCTTAATACTAAGTACAACAAAA  50
      ||||| ||  ||||||||||||  || |||  || ||||||||||| |||
seq2  ATTATATTTGAAGATAGTACATTGAA-TCT--ATTCTAAGTACAAC-AAA  46

seq1  CCCACTCAATGGCCTTTCTTCCCTTGTGTTATTCCTGGCAGTTTATCATT  100
      |||||||||||| |||||| ||  |||| |||| ||||||| |||||| |
seq2  CCCACTCAATGG-CTTTCTACC--TGTG-TATT-CTGGCAG-TTATCA-T  89

seq1  TTCTGGGTATTTATACTGGCTGTTCCCTCATTTCTCTTTCCTATTTTCTC  150
      |||| |||||||||||| |||||  ||||| |||||||||||| ||||||
seq2  TTCT-GGTATTTATACT-GCTGT--CCTCA-TTCTCTTTCCTA-TTTCTC  133

seq1  CCTCTCTTACTTCTCTTTCTGTTTTTCTATTCTTTTTCTTTTATTTCAAC  200
      |||||| |||||||| ||||| ||||||| ||||||   |||||||||| 
seq2  CCTCTC-TACTTCTC-TTCTG-TTTTCTA-TCTTTT--CTTTATTTCAA-  176

seq1  CCGGTGCAGTCAACTATCGTCTATCAAGATAAATGAAGGTACATGGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTGCAGTCAACTATCGTCTATCAAGATAAATGAAGGTACATGGAAGA  226

seq1  AGATAAAACAGAATGCGGTTTGTTTTGATTCTGTTACCAGCTGACTAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAACAGAATGCGGTTTGTTTTGATTCTGTTACCAGCTGACTAAGA  276

seq1  CTAGACCATAAATTCAGAGATCTGAAATTTTTTTTTCCAAATAATCACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACCATAAATTCAGAGATCTGAAATTTTTTTTTCCAAATAATCACAG  326

seq1  TACTTAACACTGAAGACAAAATGCGGCTAAGCTTGCACATGTATCTGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAACACTGAAGACAAAATGCGGCTAAGCTTGCACATGTATCTGGAT  376

seq1  TCGTAAAAGAGAAGTCATACTTTGTAGATCCTCACCATAAAAAATTAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTAAAAGAGAAGTCATACTTTGTAGATCCTCACCATAAAAAATTAAGA  426

seq1  AGGAATTTTCTACAAAAATCATTCAAGAATGCAGCTCTCTGTTGCTAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTTTCTACAAAAATCATTCAAGAATGCAGCTCTCTGTTGCTAGAC  476

seq1  ATGAATAACTTTCTATAAATGTCAGTAGAACTCCGCGTGGGGTTACTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAACTTTCTATAAATGTCAGTAGAACTCCGCGTGGGGTTACTACT  526

seq1  TTTAACTATGCATCTTTTTCTTTAACTTAGCTTATGCCCACTTGGAGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTATGCATCTTTTTCTTTAACTTAGCTTATGCCCACTTGGAGATA  576

seq1  CCAAAGGCATCAGAATGAGTTAACAGTAAACCTTTCTCACTGTTGTGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGCATCAGAATGAGTTAACAGTAAACCTTTCTCACTGTTGTGAGA  626

seq1  CTTAAATTTATCCTTAAAAAATAAAGAAAATCCATGGATTTTGTTATTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATTTATCCTTAAAAAATAAAGAAAATCCATGGATTTTGTTATTGT  676

seq1  TTGTGGTGATGGTGTTTTTTATTTTGTTTGTTTGCGTTTTTTCTCACTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTGATGGTGTTTTTTATTTTGTTTGTTTGCGTTTTTTCTCACTAC  726

seq1  TCAAAAAAAAACTGTGTATAGATGTCAAGAAATAAGAATTACTAAAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAAAAACTGTGTATAGATGTCAAGAAATAAGAATTACTAAAGAAT  776

seq1  CATAATGTACATTTTATGTGCATAACAACTAGAAAATAAAGAGGGAATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGTACATTTTATGTGCATAACAACTAGAAAATAAAGAGGGAATAC  826

seq1  CTATTTTTTTCTATTACTTTCTATACTCAATCAACAAGGGAAAATATTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTTTTCTATTACTTTCTATACTCAATCAACAAGGGAAAATATTAG  876

seq1  TAATATACTGAACTATGTCAGTGTCTGAGACCTTATTTCTAATTTTCAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATACTGAACTATGTCAGTGTCTGAGACCTTATTTCTAATTTTCAAT  926

seq1  TAACACTTAAGTTTTGTGAAAAAGAACCAAAACAATGACATTCAAGAAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTTAAGTTTTGTGAAAAAGAACCAAAACAATGACATTCAAGAAAT  976

seq1  CTTTTTCAGAAATAGTAGTTGAGAGTTGACAAAAATCTTAAAAAAATGTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCAGAAATAGTAGTTGAGAGTTGACAAAAATCTTAAAAAAATGTT  1026

seq1  AAACAAATATAATTTTGTCATATCTATATTCTTAGTTTTATCCACTTAAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATATAATTTTGTCATATCTATATTCTTAGTTTTATCCACTTAAC  1076

seq1  CTAAAAGACTTCTAACAAGAAAGACAGTTAAATGCTTATATCATGCTGAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGACTTCTAACAAGAAAGACAGTTAAATGCTTATATCATGCTGAA  1126

seq1  TTC  1153
      |||
seq2  TTC  1129


seq1: chr16_63597794_63598981
seq2: B6Ng01-266C01.g_65_1225

seq1  GAATTCAATAAATGAAAGGCAGCCATGGTCTGAGAGTCTGTAAGTCTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAAATGAAAGGCAGCCATGGTCTGAGAGTCTGTAAGTCTGGC  50

seq1  ACCTTTGAAATAATTACATTCCATTAAGTGCTGTATTTATTTATTGCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGAAATAATTACATTCCATTAAGTGCTGTATTTATTTATTGCCTG  100

seq1  TCTTTGATCATGAAATCAGAAAATGCCTGTCTCCACAGTAGTACACCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGATCATGAAATCAGAAAATGCCTGTCTCCACAGTAGTACACCTAC  150

seq1  TAACAAGCTCATGTTCCTGCTGTAGCGTTCTTACTGTTAGTTTGGTAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGCTCATGTTCCTGCTGTAGCGTTCTTACTGTTAGTTTGGTAGGA  200

seq1  GAACTATTGGCATGCTAGTTACCTGCTCCAACAACTTTGTCGATGGATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTATTGGCATGCTAGTTACCTGCTCCAACAACTTTGTCGATGGATAT  250

seq1  ATTGGTGGCATCCAACTCCTTCGCGAACTCATGAACTGCTTGAGTAGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTGGCATCCAACTCCTTCGCGAACTCATGAACTGCTTGAGTAGGGT  300

seq1  CTTCATATGTATGTGGATCAACATAGGTCCTGAGACCTGGAAGTTTTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATATGTATGTGGATCAACATAGGTCCTGAGACCTGGAAGTTTTACT  350

seq1  GTCAACAAAAAGAAAAGCATGATTTTACTGAGCAAATTTCAAAATCTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACAAAAAGAAAAGCATGATTTTACTGAGCAAATTTCAAAATCTTAC  400

seq1  TCGCTAAAAAAAATCTCTATCACACTAATTTGTATCGATCTGTAGGCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTAAAAAAAATCTCTATCACACTAATTTGTATCGATCTGTAGGCTAC  450

seq1  TCTGTAATATTAAAAAAAAAATCTCATGGAGATATATTAATTGTAAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAATATTAAAAAAAAAATCTCATGGAGATATATTAATTGTAAGAAA  500

seq1  AAAGTTTTCTGCATTAGAGTACAAAGAGGAAGCACAATAAAGTATCTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTCTGCATTAGAGTACAAAGAGGAAGCACAATAAAGTATCTTCT  550

seq1  CTGCTAAGATCCTAGGAGGGGATAATGAAATGCAGATCTCAGGAGGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAAGATCCTAGGAGGGGATAATGAAATGCAGATCTCAGGAGGAAGA  600

seq1  GGTCAATAGCATGAGTGGGCATGGTAGTTACTACCACAAACCAACAAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAATAGCATGAGTGGGCATGGTAGTTACTACCACAAACCAACAAACC  650

seq1  ACTGTGCTGCTAAACACTTCTGGTTCAGAGGCGCTGGAATAGCCAAGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGCTGCTAAACACTTCTGGTTCAGAGGCGCTGGAATAGCCAAGTAT  700

seq1  TTTTACAGTACACCATATGACAGAAAATCAAAATTCATGAATATGCTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAGTACACCATATGACAGAAAATCAAAATTCATGAATATGCTCAG  750

seq1  GAATCAGAAGAGAGTATAGAGTAATTAAAACACTAAAGAGAAAACAGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGAAGAGAGTATAGAGTAATTAAAACACTAAAGAGAAAACAGAAC  800

seq1  ATCTCTGATACTACTGTATGTATGTTGTTTTAAGTATTCACAAATGAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGATACTACTGTATGTATGTTGTTTTAAGTATTCACAAATGAGTT  850

seq1  TGCCATTTACATGGAAAATGGAGTTTAAGCTTTACATTTGATGTGCATAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTTACATGGAAAATGGAGTTTAAGCTTTACATTTGATGTGCATAC  900

seq1  CAGCATACTATCAGTAGACTGAGATCATGTTTGACTCTGAACATAACTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATACTATCAGTAGACTGAGATCATGTTTGACTCTGAACATAACTAA  950

seq1  AGGCAACATAAATGCTGTTTAAACGCTTAATTGTTAGGCTGAGAAGCAAT  1000
      |||||||||||||||||||||||||||||||||||| |||||| ||||||
seq2  AGGCAACATAAATGCTGTTTAAACGCTTAATTGTTA-GCTGAG-AGCAAT  998

seq1  TTTAAACCTAAGTCATAAATGTAACTTCATAACACAATTATTTATTCCAT  1050
      |||||||   |||||||||||||   |||||||||||||||||||| |||
seq2  TTTAAAC--TAGTCATAAATGTA--CTCATAACACAATTATTTATT-CAT  1043

seq1  TATTCTGAATTTGAAATTCTCATGGCTCTCTGTAAACAAAATATCAAAAA  1100
         |||||| |||||  |||||| |||||||||  |||||||||| ||||
seq2  --ATCTGAA-TTGAA--TCTCATTGCTCTCTGT--ACAAAATATCCAAAA  1086

seq1  CCCAAAAGGTAAATCATTTATATATCATTTAATATCATGAAATACGTTTC  1150
      ||   || ||  |||||||||||||||||  | |||||||||| || |||
seq2  CC--TAACGT--ATCATTTATATATCATT--AAATCATGAAAT-CGGTTC  1129

seq1  ATTTGGAAAAACTAT-CTCATTAAAGAGAATATGAAATG  1188
      |||||  ||| |||| |||||| ||||||    ||||||
seq2  ATTTG--AAACCTATCCTCATT-AAGAGA----GAAATG  1161


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