BAC Information

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BAC

Clone NameB6Ng01-266D01
Chromosome16 (Build37)
Map Location 53,098,004 - 53,231,377
singlet/doubletdoublet
Overlap genenone
Upstream geneCblb, Alcam, LOC100043430, LOC667895
Downstream geneLOC433027, LOC100043442
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266D01.bB6Ng01-266D01.g
ACCGA069648GA069649
length1,1921,092
definitionB6Ng01-266D01.b B6Ng01-266D01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,098,004 - 53,099,201)(53,230,264 - 53,231,377)
sequence
gaattctagaggaaaaatagttaagtgtaagtgagccagggtgttagctg
gcagaaagcattccttcatgacttcttcctgtgggtttttgccttgagtt
tttgtcatgaattcccttcatgacagatgatggcacagagtttaggtcaa
agaatcatttccagttacaggttgcttttttgtcaaaactactcgccata
ccaatcagatagaactaaattaataactttgaaaagctaataatctgcct
ttctgggcacaccatgacaatggcatggatttcctaatacacttgaacca
aaagtagaccaaagttaaaccattctggacagaggaatgagaatccctag
taagtttcaaatcacatctggggtcattcttctactgtcttgaacaatag
cccctggattgttccttgcaactgtctagtctctatcaaatctttggaca
tgtattctgaaaacatgtttctcattattttcaataacgataaactgaaa
gttgccaacacctttatttcttgctccttgtcccgtaccagtttcatctt
taagttaatgttgttcttgaatttggctatgcgtagtcaagagcagacag
gtgactcctataacatttttctaagagaattcttcggttaaagatctggt
tttatcacctccatgttgtactttgcacagaacattgcgaatacaactca
cttcagcctatttcgtgaatgttttgtgaaagaacatcctgtccttcaca
atcaacaaagcagcaattaaacatttataagtggtatctcgccataatgg
attttctggtcatttttttggagtcctcataagtttggtctatgtgtcct
gttcctcaagtcttatgacatatatctgaaaactccttcggcctctatct
attttacagctctcaggatacttctgcaagttcacggacttcttagatga
ctgtctcacttactacatgtgtgtctgacagtgtcctcactgctataaaa
gagcgacatagtggcaaagcttaaaaagtatgtactggtcagcatttttt
gtcactatgaccaatagccacaaaacagcttaaaggagaaagatttactt
tagcccattgtttcagactcatagtacaggtctttgccactgttgacctt
acctcaagtgaagcgaggagttatgaagaagctactctctac

gaattctgcctttgtgtacatggtttttagggaatatgaacaaataatat
taaacattatcatagtcactatgtaaatgtgatataaaagtttataatca
gatctggacaagatagtatttcttttctagaatataaaactgaggtaaca
ttcatttcttaggaataaagtggcattttttttctttcctgccttatgaa
gagaacttatgtaaaccttaaagggatgatgccttccaagtagaaataaa
cagtaaacttagctcggttcttttctgtgattcagaacatgtgccccagt
tgtaaatttcctcatatgccatgttaagccacttgaaatttcttcttcca
aaagcataaaaattccagactattttacttccagcctttcactattactt
tagcaatagactgcaaatgtcaatactggttaggatacctggtatttagt
agacacatatgtaagtacttcttcaattcatatgtaattacatcatagtt
aataaaaagcaattattagaatgtggactcatcaacttaattttatttta
agtttgctttgcacataacactaaataaaagaatcccaaaactcttaatt
ttctaataaaaaatgagaaattaatattttagcagagtaaggacaatgta
aactgatcagtttttatatcttagaatatttttcttttcaaaataattta
atcattttattgtattttttcttacatctatagtatgtgaaatgttttgg
gcctcaaccagaaacaaagaactatagctaactgagttggaatgcccaga
gtggcctatttaacattctgcagggaagaagagcagaccactggttatct
attactcaatggccagcctaagaaacctgcatatacacagcatttcacag
atggagataatactcataaatatatttgtgtatacataatgcatgtaaag
acactagtgacaaatgagagatcacggatttgaaatgccagggagcagtg
tgaggagtttgcaggagaaagagagagaatgacgattactttatatctca
aacagaaaattcaaaagtaatatgaggtgatttaaacatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_53098004_53099201
seq2: B6Ng01-266D01.b_47_1238

seq1  GAATTCTAGAGGAAAAATAGTTAAGTGTAAGTGAGCCAGGGTGTTAGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAGGAAAAATAGTTAAGTGTAAGTGAGCCAGGGTGTTAGCTG  50

seq1  GCAGAAAGCATTCCTTCATGACTTCTTCCTGTGGGTTTTTGCCTTGAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAGCATTCCTTCATGACTTCTTCCTGTGGGTTTTTGCCTTGAGTT  100

seq1  TTTGTCATGAATTCCCTTCATGACAGATGATGGCACAGAGTTTAGGTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCATGAATTCCCTTCATGACAGATGATGGCACAGAGTTTAGGTCAA  150

seq1  AGAATCATTTCCAGTTACAGGTTGCTTTTTTGTCAAAACTACTCGCCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCATTTCCAGTTACAGGTTGCTTTTTTGTCAAAACTACTCGCCATA  200

seq1  CCAATCAGATAGAACTAAATTAATAACTTTGAAAAGCTAATAATCTGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCAGATAGAACTAAATTAATAACTTTGAAAAGCTAATAATCTGCCT  250

seq1  TTCTGGGCACACCATGACAATGGCATGGATTTCCTAATACACTTGAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGCACACCATGACAATGGCATGGATTTCCTAATACACTTGAACCA  300

seq1  AAAGTAGACCAAAGTTAAACCATTCTGGACAGAGGAATGAGAATCCCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGACCAAAGTTAAACCATTCTGGACAGAGGAATGAGAATCCCTAG  350

seq1  TAAGTTTCAAATCACATCTGGGGTCATTCTTCTACTGTCTTGAACAATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTCAAATCACATCTGGGGTCATTCTTCTACTGTCTTGAACAATAG  400

seq1  CCCCTGGATTGTTCCTTGCAACTGTCTAGTCTCTATCAAATCTTTGGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGATTGTTCCTTGCAACTGTCTAGTCTCTATCAAATCTTTGGACA  450

seq1  TGTATTCTGAAAACATGTTTCTCATTATTTTCAATAACGATAAACTGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCTGAAAACATGTTTCTCATTATTTTCAATAACGATAAACTGAAA  500

seq1  GTTGCCAACACCTTTATTTCTTGCTCCTTGTCCCGTACCAGTTTCATCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCAACACCTTTATTTCTTGCTCCTTGTCCCGTACCAGTTTCATCTT  550

seq1  TAAGTTAATGTTGTTCTTGAATTTGGCTATGCGTAGTCAAGAGCAGACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTAATGTTGTTCTTGAATTTGGCTATGCGTAGTCAAGAGCAGACAG  600

seq1  GTGACTCCTATAACATTTTTCTAAGAGAATTCTTCGGTTAAAGATCTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCCTATAACATTTTTCTAAGAGAATTCTTCGGTTAAAGATCTGGT  650

seq1  TTTATCACCTCCATGTTGTACTTTGCACAGAACATTGCGAATACAACTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCACCTCCATGTTGTACTTTGCACAGAACATTGCGAATACAACTCA  700

seq1  CTTCAGCCTATTTCGTGAATGTTTTGTGAAAGAACATCCTGTCCTTCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCCTATTTCGTGAATGTTTTGTGAAAGAACATCCTGTCCTTCACA  750

seq1  ATCAACAAAGCAGCAATTAAACATTTATAAGTGGTATCTCGCCATAATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACAAAGCAGCAATTAAACATTTATAAGTGGTATCTCGCCATAATGG  800

seq1  ATTTTCTGGTCATTTTTTTGGAGTCCTCATAAGTTTGGTCTATGTGTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGGTCATTTTTTTGGAGTCCTCATAAGTTTGGTCTATGTGTCCT  850

seq1  GTTCCTCAAGTCTTATGACATATATCTGAAAACTCCTTCGGCCTCTATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCAAGTCTTATGACATATATCTGAAAACTCCTTCGGCCTCTATCT  900

seq1  ATTTTACAGCTCTCAGGATACTTCTGCAAGTTCACGGACTTCTTAGATGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACAGCTCTCAGGATACTTCTGCAAGTTCACGGACTTCTTAGATGA  950

seq1  CTGTCTCACTTACTACATGTGTGTCTGACAGTGTCCTCACTGCTATAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCACTTACTACATGTGTGTCTGACAGTGTCCTCACTGCTATAAAA  1000

seq1  GAGCGACATAGTGGCAAAGCTTAAAAAGTAATGTACTGGTCAGCA-TTTT  1049
      ||||||||||||||||||||||||||||| ||||||||||||||| ||||
seq2  GAGCGACATAGTGGCAAAGCTTAAAAAGT-ATGTACTGGTCAGCATTTTT  1049

seq1  TGTCACTATGACCAAATAGCCAACAAAACAGCTTAAAGGAGAAAGAATTT  1099
      ||||||||||||| ||||||| ||||||||||||||||||||||| ||||
seq2  TGTCACTATGACC-AATAGCC-ACAAAACAGCTTAAAGGAGAAAG-ATTT  1096

seq1  ACTTTAGCTCATTGTTTCAGACTCATTAGTTAACA-GTCTTTGCCACTGT  1148
      |||||||| |||||||||||||||| ||||  ||| ||||||||||||||
seq2  ACTTTAGCCCATTGTTTCAGACTCA-TAGT--ACAGGTCTTTGCCACTGT  1143

seq1  TGACTCTACCTCAGGTG-AGCGAGGAGTTTATGAAAGAAGCTACTCTCTA  1197
      ||||  ||||||| ||| ||||||||| ||||| ||||||||||||||||
seq2  TGACCTTACCTCAAGTGAAGCGAGGAG-TTATG-AAGAAGCTACTCTCTA  1191

seq1  C  1198
      |
seq2  C  1192


seq1: chr16_53230264_53231377
seq2: B6Ng01-266D01.g_65_1156 (reverse)

seq1  TTCATGTTTTTAAATTCACCTCCATATTACTTTTTGAAATTTTTCTTGTT  50
      |||||||||   || |||||| |||||||| |||||||  ||||||   |
seq2  TTCATGTTT---AAATCACCT-CATATTAC-TTTTGAA--TTTTCT--GT  41

seq1  TTGAGATTATAAAGTAATTCCGTCATTTCCTCCTTCTCTTTCCTCCCTGC  100
      |||||| |||||||||||  |||||||  |||  ||||||||   |||||
seq2  TTGAGA-TATAAAGTAAT--CGTCATT--CTC--TCTCTTTC--TCCTGC  82

seq1  AAACTTCCCTCACACTGCTCCCTGGCATTTTCAAATCCGTGATCTCTTCA  150
      |||||  |||||||||||||||||||| |||||||||||||||||| |||
seq2  AAACT--CCTCACACTGCTCCCTGGCA-TTTCAAATCCGTGATCTC-TCA  128

seq1  TTTGTCACTAGTGTCTTTACATGCATTATGTATACACAAATATATTTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCACTAGTGTCTTTACATGCATTATGTATACACAAATATATTTATG  178

seq1  AGTATTATCTCCATCTGTGAAATGCTGTGTATATGCAGGTTTCTTAGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTATCTCCATCTGTGAAATGCTGTGTATATGCAGGTTTCTTAGGCT  228

seq1  GGCCATTGAGTAATAGATAACCAGTGGTCTGCTCTTCTTCCCTGCAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATTGAGTAATAGATAACCAGTGGTCTGCTCTTCTTCCCTGCAGAAT  278

seq1  GTTAAATAGGCCACTCTGGGCATTCCAACTCAGTTAGCTATAGTTCTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATAGGCCACTCTGGGCATTCCAACTCAGTTAGCTATAGTTCTTTG  328

seq1  TTTCTGGTTGAGGCCCAAAACATTTCACATACTATAGATGTAAGAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGTTGAGGCCCAAAACATTTCACATACTATAGATGTAAGAAAAAA  378

seq1  TACAATAAAATGATTAAATTATTTTGAAAAGAAAAATATTCTAAGATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATAAAATGATTAAATTATTTTGAAAAGAAAAATATTCTAAGATATA  428

seq1  AAAACTGATCAGTTTACATTGTCCTTACTCTGCTAAAATATTAATTTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGATCAGTTTACATTGTCCTTACTCTGCTAAAATATTAATTTCTC  478

seq1  ATTTTTTATTAGAAAATTAAGAGTTTTGGGATTCTTTTATTTAGTGTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTATTAGAAAATTAAGAGTTTTGGGATTCTTTTATTTAGTGTTAT  528

seq1  GTGCAAAGCAAACTTAAAATAAAATTAAGTTGATGAGTCCACATTCTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAAGCAAACTTAAAATAAAATTAAGTTGATGAGTCCACATTCTAAT  578

seq1  AATTGCTTTTTATTAACTATGATGTAATTACATATGAATTGAAGAAGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTTTTTATTAACTATGATGTAATTACATATGAATTGAAGAAGTAC  628

seq1  TTACATATGTGTCTACTAAATACCAGGTATCCTAACCAGTATTGACATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATATGTGTCTACTAAATACCAGGTATCCTAACCAGTATTGACATTT  678

seq1  GCAGTCTATTGCTAAAGTAATAGTGAAAGGCTGGAAGTAAAATAGTCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCTATTGCTAAAGTAATAGTGAAAGGCTGGAAGTAAAATAGTCTGG  728

seq1  AATTTTTATGCTTTTGGAAGAAGAAATTTCAAGTGGCTTAACATGGCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTATGCTTTTGGAAGAAGAAATTTCAAGTGGCTTAACATGGCATA  778

seq1  TGAGGAAATTTACAACTGGGGCACATGTTCTGAATCACAGAAAAGAACCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAATTTACAACTGGGGCACATGTTCTGAATCACAGAAAAGAACCG  828

seq1  AGCTAAGTTTACTGTTTATTTCTACTTGGAAGGCATCATCCCTTTAAGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAGTTTACTGTTTATTTCTACTTGGAAGGCATCATCCCTTTAAGGT  878

seq1  TTACATAAGTTCTCTTCATAAGGCAGGAAAGAAAAAAAATGCCACTTTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATAAGTTCTCTTCATAAGGCAGGAAAGAAAAAAAATGCCACTTTAT  928

seq1  TCCTAAGAAATGAATGTTACCTCAGTTTTATATTCTAGAAAAGAAATACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGAAATGAATGTTACCTCAGTTTTATATTCTAGAAAAGAAATACT  978

seq1  ATCTTGTCCAGATCTGATTATAAACTTTTATATCACATTTACATAGTGAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTCCAGATCTGATTATAAACTTTTATATCACATTTACATAGTGAC  1028

seq1  TATGATAATGTTTAATATTATTTGTTCATATTCCCTAAAAACCATGTACA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATAATGTTTAATATTATTTGTTCATATTCCCTAAAAACCATGTACA  1078

seq1  CAAAGGCAGAATTC  1114
      ||||||||||||||
seq2  CAAAGGCAGAATTC  1092


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