BAC Information

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BAC

Clone NameB6Ng01-266E02
Chromosome16 (Build37)
Map Location 41,662,151 - 41,804,156
singlet/doubletdoublet
Overlap geneLsamp
Upstream geneEG667450
Downstream geneGap43
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266E02.bB6Ng01-266E02.g
ACCGA069695GA069696
length1,1921,124
definitionB6Ng01-266E02.b B6Ng01-266E02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,802,942 - 41,804,156)(41,662,151 - 41,663,263)
sequence
gaattctccacctgagaaatctcccagatgtctctcaagcttcttgagtc
tttgtttaaaaaaaaaaaaaattatgtctggtccttctccattgtaacca
acagggagttttcctgaattttaaaatgtttagtaccatggtagaatgag
acacaagagaataaaattataaaacaaaataaaaacagaccccacagaat
ttttcagggagaagacatatactaaatcttctggacatcttttttttttt
tttcaccatcattttatgaggaataatagaagagattttttttaaacttg
atttttctcacagttgagaaaagattgctgttaaaatattgaaaattcta
atttagttagcaagtccttaattagtaactactctatgattgatggtgcc
ctaattatttggagaataagttatttagtaagataccggctctggcttgt
gaaactgaggggggcacacactcttataactacctttgagtatatatggc
agatggtgttgagttcaaacagagagctacagttaaaccaatggcagtct
tgagtggtggaagaaaagtttagagtctaaaagagaaacttatgaagtat
tgaattcaacgtaagcgcatgatctctttttgattgtaatcattttgatg
gtcctttgtatgtacatgtgtatgtgtacataaacgtatgcatatacaaa
ttattaaagtatgcaaaattatgaacatttttatcttacatgcttacaaa
tatgcatatgcatgcagaaaaggaagcaatttttaaagagaaatattgga
cgggcaatataattttggactaatcttcaaaactggggaagcattagaaa
gaataaaaaagatggggtggaaactatggaggagaaaataggaaatgata
catgagacaggtaggtggtagatatgtcttcattactgttcaattattgt
gagatatatcatgagccaagccaccctttagaagaaagcattgatgatgt
cttgcccatagttcagagggtagtccatgactattgaagtgtgcacagca
gtttcaagcagcagcatgtgtttagcatagctgagaccctcaatatgctc
tgcagtgcagagaaggtatcactcccaagctcagtatccgactgtccaga
cccacccttatctctagagttccatctactgggagcaccaaa
gaattccatcccatctggctctaccccttttctctctctcattacaaaac
aaactggcttctgtgggataattgtaaagtatgagataaggtgagatgag
atgagataagcaaaagctagcatgttgaatttggagtaaacaagagaggg
gaaaccacctaagagaaggtgcaagtagcagagacccacttgtttgcaca
ttcagaaattcccattaagaactctaaactgcaactatatatgtgaatgg
cttatagaatgaaagagagagaaaaagaaaaatatgctaataaaataaaa
atagaaaataagatataattaataaaaaggaaagaacatggcaggacatt
ataagataagaaacctccaaagatgccattgagtttgctttctgtttgaa
tatccactgataggcatgcttacccttaagagcagtctgtttgtcagtga
gactcccttggaggaaactgaaactttatttgtaagtggttatcaattgg
aggtatgatgcgtactcttatgcagaaggaaatgggcattgcttatcatc
ctacacaataggaatattttgaaacactttgacaacggcaaaaactgtgt
tgatttattttgctgagatgtgtgttccacagggtgaatctttgaggacc
ccacagacctcagaggtgaatttcagagaaagaaggattttaggaacact
gagagcagatttatattatttaagacaaacacaaatgatatcgtttattg
tgcccactgcgtctcaggcatttttcaaacgtattaaacctcctcataat
aacagcatttgacatgtgtcatggtttatgcttcacaagtagagaaggag
aagtcattctctctggataaaatatctaataattgatacaaacactattt
aaatgtgcagagccacatactggcaactgtaccctaaagaatatagtggc
tatgatattgtggaatcaatttatgacgtgattttttttttctttttatg
ggtatatcataagctgtttctcaattcataaaatctccataaaatgtttt
ttatagtataaacatatttatgtattataatttatttattcagtagcttt
tatgttctagaaaatttgtagcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_41802942_41804156
seq2: B6Ng01-266E02.b_46_1237 (reverse)

seq1  TTTGGT--TTCCAGTAGATGGACTTCTTAGGAAGAATTAAGAGGTGTGGT  48
      ||||||  | ||||||||||||  |||     |||  |||| |||| |||
seq2  TTTGGTGCTCCCAGTAGATGGAACTCT-----AGAGATAAG-GGTG-GGT  43

seq1  CTTTTTGGACAAGTCGTATTACTGAGTTTGTGAGTGATACTCTCTTCCTG  98
      |    ||||| ||||| | ||||||| ||| |||||||||  |||  |||
seq2  C----TGGAC-AGTCGGA-TACTGAGCTTGGGAGTGATACCTTCT--CTG  85

seq1  CAACTTGCAGAGCATATATGA-GGTCTCAGCTATTGCTTAAACACCATGC  147
      ||   |||||||||||| ||| ||||||||||| ||| |||||| |||| 
seq2  CA--CTGCAGAGCATAT-TGAGGGTCTCAGCTA-TGC-TAAACA-CATG-  128

seq1  CTGCTGGCTTGAAACTGCTGTGCACACTTTCATAGTCATGGACTAACCCT  197
      ||||| |||||||||||||||||||||||  ||||||||||||| |||||
seq2  CTGCT-GCTTGAAACTGCTGTGCACACTTCAATAGTCATGGACT-ACCCT  176

seq1  CTGAACCTATGAGCAAGACATCATCAAATGCTTTCTTCTAAA-GGTTGCT  246
      ||||| ||||| ||||||||||||| |||||||||||||||| ||| |||
seq2  CTGAA-CTATGGGCAAGACATCATC-AATGCTTTCTTCTAAAGGGTGGCT  224

seq1  TTGCTCATGATATATCTTCACAATAATTGAACAGTAATGAAGACATATCT  296
      | |||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGGCTCATGATATATC-TCACAATAATTGAACAGTAATGAAGACATATCT  273

seq1  ACCACCTACCTGTCTCATGTATCATTTCCTATTTTCTCCTCCATAGTTTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTACCTGTCTCATGTATCATTTCCTATTTTCTCCTCCATAGTTTC  323

seq1  CACCCCATCTTTTTTATTCTTTCTAATGCTTCCCCAGTTTTGAAGATTAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCATCTTTTTTATTCTTTCTAATGCTTCCCCAGTTTTGAAGATTAG  373

seq1  TCCAAAATTATATTGCCCGTCCAATATTTCTCTTTAAAAATTGCTTCCTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAATTATATTGCCCGTCCAATATTTCTCTTTAAAAATTGCTTCCTT  423

seq1  TTCTGCATGCATATGCATATTTGTAAGCATGTAAGATAAAAATGTTCATA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCATGCATATGCATATTTGTAAGCATGTAAGATAAAAATGTTCATA  473

seq1  ATTTTGCATACTTTAATAATTTGTATATGCATACGTTTATGTACACATAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCATACTTTAATAATTTGTATATGCATACGTTTATGTACACATAC  523

seq1  ACATGTACATACAAAGGACCATCAAAATGATTACAATCAAAAAGAGATCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTACATACAAAGGACCATCAAAATGATTACAATCAAAAAGAGATCA  573

seq1  TGCGCTTACGTTGAATTCAATACTTCATAAGTTTCTCTTTTAGACTCTAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCTTACGTTGAATTCAATACTTCATAAGTTTCTCTTTTAGACTCTAA  623

seq1  ACTTTTCTTCCACCACTCAAGACTGCCATTGGTTTAACTGTAGCTCTCTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCTTCCACCACTCAAGACTGCCATTGGTTTAACTGTAGCTCTCTG  673

seq1  TTTGAACTCAACACCATCTGCCATATATACTCAAAGGTAGTTATAAGAGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACTCAACACCATCTGCCATATATACTCAAAGGTAGTTATAAGAGT  723

seq1  GTGTGCCCCCCTCAGTTTCACAAGCCAGAGCCGGTATCTTACTAAATAAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCCCCCCTCAGTTTCACAAGCCAGAGCCGGTATCTTACTAAATAAC  773

seq1  TTATTCTCCAAATAATTAGGGCACCATCAATCATAGAGTAGTTACTAATT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTCCAAATAATTAGGGCACCATCAATCATAGAGTAGTTACTAATT  823

seq1  AAGGACTTGCTAACTAAATTAGAATTTTCAATATTTTAACAGCAATCTTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTTGCTAACTAAATTAGAATTTTCAATATTTTAACAGCAATCTTT  873

seq1  TCTCAACTGTGAGAAAAATCAAGTTTAAAAAAAATCTCTTCTATTATTCC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACTGTGAGAAAAATCAAGTTTAAAAAAAATCTCTTCTATTATTCC  923

seq1  TCATAAAATGATGGTGAAAAAAAAAAAAAAGATGTCCAGAAGATTTAGTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAATGATGGTGAAAAAAAAAAAAAAGATGTCCAGAAGATTTAGTA  973

seq1  TATGTCTTCTCCCTGAAAAATTCTGTGGGGTCTGTTTTTATTTTGTTTTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTTCTCCCTGAAAAATTCTGTGGGGTCTGTTTTTATTTTGTTTTA  1023

seq1  TAATTTTATTCTCTTGTGTCTCATTCTACCATGGTACTAAACATTTTAAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTATTCTCTTGTGTCTCATTCTACCATGGTACTAAACATTTTAAA  1073

seq1  ATTCAGGAAAACTCCCTGTTGGTTACAATGGAGAAGGACCAGACATAATT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGAAAACTCCCTGTTGGTTACAATGGAGAAGGACCAGACATAATT  1123

seq1  TTTTTTTTTTTTAAACAAAGACTCAAGAAGCTTGAGAGACATCTGGGAGA  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTAAACAAAGACTCAAGAAGCTTGAGAGACATCTGGGAGA  1173

seq1  TTTCTCAGGTGGAGAATTC  1215
      |||||||||||||||||||
seq2  TTTCTCAGGTGGAGAATTC  1192

seq1: chr16_41662151_41663263
seq2: B6Ng01-266E02.g_73_1188

seq1  TCCCATCTGGCTCTACCCCTTTTCTCTCTCTCATTACAAAACAAACTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATCTGGCTCTACCCCTTTTCTCTCTCTCATTACAAAACAAACTGGC  50

seq1  TTCTGTGGGATAATTGTAAAGTATGAGATAAGGTGAGATGAGATGAGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGGGATAATTGTAAAGTATGAGATAAGGTGAGATGAGATGAGATA  100

seq1  AGCAAAAGCTAGCATGTTGAATTTGGAGTAAACAAGAGAGGGGAAACCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAGCTAGCATGTTGAATTTGGAGTAAACAAGAGAGGGGAAACCAC  150

seq1  CTAAGAGAAGGTGCAAGTAGCAGAGACCCACTTGTTTGCACATTCAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGAAGGTGCAAGTAGCAGAGACCCACTTGTTTGCACATTCAGAAA  200

seq1  TTCCCATTAAGAACTCTAAACTGCAACTATATATGTGAATGGCTTATAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATTAAGAACTCTAAACTGCAACTATATATGTGAATGGCTTATAGA  250

seq1  ATGAAAGAGAGAGAAAAAGAAAAATATGCTAATAAAATAAAAATAGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGAGAGAGAAAAAGAAAAATATGCTAATAAAATAAAAATAGAAAA  300

seq1  TAAGATATAATTAATAAAAAGGAAAGAACATGGCAGGACATTATAAGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATATAATTAATAAAAAGGAAAGAACATGGCAGGACATTATAAGATA  350

seq1  AGAAACCTCCAAAGATGCCATTGAGTTTGCTTTCTGTTTGAATATCCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCTCCAAAGATGCCATTGAGTTTGCTTTCTGTTTGAATATCCACT  400

seq1  GATAGGCATGCTTACCCTTAAGAGCAGTCTGTTTGTCAGTGAGACTCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGCATGCTTACCCTTAAGAGCAGTCTGTTTGTCAGTGAGACTCCCT  450

seq1  TGGAGGAAACTGAAACTTTATTTGTAAGTGGTTATCAATTGGAGGTATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAAACTGAAACTTTATTTGTAAGTGGTTATCAATTGGAGGTATGA  500

seq1  TGCGTACTCTTATGCAGAAGGAAATGGGCATTGCTTATCATCCTACACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTACTCTTATGCAGAAGGAAATGGGCATTGCTTATCATCCTACACAA  550

seq1  TAGGAATATTTTGAAACACTTTGACAACGGCAAAAACTGTGTTGATTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATATTTTGAAACACTTTGACAACGGCAAAAACTGTGTTGATTTAT  600

seq1  TTTGCTGAGATGTGTGTTCCACAGGGTGAATCTTTGAGGACCCCACAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGAGATGTGTGTTCCACAGGGTGAATCTTTGAGGACCCCACAGAC  650

seq1  CTCAGAGGTGAATTTCAGAGAAAGAAGGATTTTAGGAACACTGAGAGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGGTGAATTTCAGAGAAAGAAGGATTTTAGGAACACTGAGAGCAG  700

seq1  ATTTATATTATTTAAGACAAACACAAATGATATCGTTTATTGTGCCCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATTATTTAAGACAAACACAAATGATATCGTTTATTGTGCCCACT  750

seq1  GCGTCTCAGGCATTTTTCAAACGTATTAAACCTCCTCATAATAACAGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCTCAGGCATTTTTCAAACGTATTAAACCTCCTCATAATAACAGCAT  800

seq1  TTGACATGTGTCATGGTTTATGCTTCACAAGTAGAGAAGGAGAAGTCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATGTGTCATGGTTTATGCTTCACAAGTAGAGAAGGAGAAGTCATT  850

seq1  CTCTCTGGATAAAATATCTAATAATTGATACAAACACTATTTAAATGTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGGATAAAATATCTAATAATTGATACAAACACTATTTAAATGTGC  900

seq1  AGAGCCACATACTGGCAACTGTACCCTAAAGAATATAGTGGCTATGATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCACATACTGGCAACTGTACCCTAAAGAATATAGTGGCTATGATAT  950

seq1  TGTGGAATCAATTTTATGACGTGA--TTTTTTTTCTTTTTAT-GGTATAT  997
      ||||||||||| ||||||||||||  |||||||||||||||| |||||||
seq2  TGTGGAATCAA-TTTATGACGTGATTTTTTTTTTCTTTTTATGGGTATAT  999

seq1  CATAAGCTGTTTCTCATTTCATTAAAATTCTCCAT-AAATG-TTTTTATA  1045
      |||||||||||||||| |||||  ||| ||||||| ||||| ||||||||
seq2  CATAAGCTGTTTCTCAATTCAT--AAAATCTCCATAAAATGTTTTTTATA  1047

seq1  GTATAAACATATTTATGTATTATAATTTATTTATTTAAGTAGCCTTTTAT  1095
      ||||||||||||||||||||||||||||||||| || ||||| |||||||
seq2  GTATAAACATATTTATGTATTATAATTTATTTA-TTCAGTAG-CTTTTAT  1095

seq1  G-TCTAGATA--TTGTAGCCA  1113
      | |||||| |  |||||||||
seq2  GTTCTAGAAAATTTGTAGCCA  1116