BAC Information

Click to search

BAC

Clone NameB6Ng01-266M20
Chromosome16 (Build37)
Map Location 51,542,983 - 51,693,708
singlet/doubletdoublet
Overlap genenone
Upstream geneCcdc54, LOC672778, 5330426P16Rik, EG639820, LOC627543
Downstream geneCblb, Alcam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266M20.bB6Ng01-266M20.g
ACCGA070105GA070106
length1,0761,195
definitionB6Ng01-266M20.b B6Ng01-266M20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,542,983 - 51,544,059)(51,692,512 - 51,693,708)
sequence
gaattcatcttattaagcctggcttctgtcagttcttcaactctgtctgc
ccatcctgagttcacatgaataaagtgcatctgctgttgtcattgtcact
gacatcagttacaaagagctttaacaccaggtacaaagagcttctttctc
attagaaaatagccaccaatctctgcattaaagatcttctgtttttaagt
agtgaaaaggcaatcttctcctgggtcttgaccctgctccttaaaaacaa
tggtcaaacagtataggtctagacaacaccaggtttcaaggaaaggtttt
gcccatgtaaaaaatctagcatgccaaatggccagatttcagtttttaca
gcatattaatgtatcaccaaactattttttaactcagaaataaaatgtga
tatttgtaaatttagaataagagccatcattttcaatttgtaggaactat
gtcgtgcctgctgtatttttgtgtatgtaaaaatatgtttctgaaatgat
atacaaagtgaaattttagaaacaaacaaatgaaaacacatgaagtggaa
tagtgaaccaatagaatagttttatttgaatagagattttggcattttca
gtttggcataattcagttttcttaaggaaccatttttgcacatatgtatg
gctattaaatatcataaagtacatgcaaatgtatttatttgtgttgagca
gtaattgaagtatgtatatgtgtgtacatgtaagttcatactatttgaaa
tacagagaaactagaaagtatgcaaagtatgatgtgacagagataatcat
gttttcacagtcatcttggttgacagacagaacagatgaaatgagttcaa
ataggacagaggaccagcacactaatggtgctgatttcagagagaccaca
gttgacatctcagttttaccccttaatgagaatcatttcccttctctctc
aactgaaaataatctcatctgccttgggaatgttataattaattgtaagc
atgtgcttttggtttcatatttgcaccctcaacagtggcaggtgcatttt
ttatacatttgtcctgacatgtgaca

gaattctgtttagatctgtaccccatttttcaattttgttatttgtttct
tgttatgcaggtttttctgagtcctctctctattgtggatattagctttc
catctggatatgcacctaatacactctttttccattctataggctactgc
attgtcccaaagatggtgttctttactatttttttttattttcagtttta
ggaggtcccatttattaatttttgttcttattgactgtgctattcgtgtt
caattcaggaagtctttttctgtaacattgagctcaggattattccccac
tttctcttttatcagattcagtgcatctcgtcttatattgaggtttttga
ttcacttgttgttgagttttgttcatgatgataagtatggacctttttgc
actcttctccatgtctggccagccctgccatggactcacctgattttgtc
tctgaatatccctgcattcgcttagctggagtcatttttgttaaatagat
atattaactctaaaaacaaactttatcctaaatacccactattattacca
atatttgcctaagtattagtgagaaatttgactttacaacttactttatt
caaagaaaacaggcatgtgagattttgaggccaatgtatatttcagacag
gttgggagtaagtggactgaatctctttgtctattgattccttgaagata
acttgaagtacttgtagtaaatgctgtagataaaaatcatatacaaaagg
gaggctttctcttccactcacaagactatgcatcccagaccattagcctt
ctttacgttcttctctgtcattattccttcaggcttgcatcctctcgctt
taatcaagctaggcaattggaagcttctttagtctttggttcctaaagtg
ctccttgggttttgcccttcttgtttactgttttacatcacagaagagat
ctgaaccattgcacaataacttcctgagaggccatagattcccacttctt
cattccctgggtagttaagtgactgcatattattatgagtcaacaacaca
ggatatttctggctgtagctagtatttgcacaaagaatcaggaagctacc
tctcctctcaatggggagaagacttttatgaatcttactgcaaaacgatc
tggaattgactcttggagccagcaatcctgggctttcacatcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_51542983_51544059
seq2: B6Ng01-266M20.b_43_1118

seq1  GAATTCATCTTATTAAGCCTGGCTTCTGTCAGTTCTTCAACTCTGTCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTATTAAGCCTGGCTTCTGTCAGTTCTTCAACTCTGTCTGC  50

seq1  CCATCCTGAGTTCACATGAATAAAGTGCATCTGCTGTTGTCATTGTCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTGAGTTCACATGAATAAAGTGCATCTGCTGTTGTCATTGTCACT  100

seq1  GACATCAGTTACAAAGAGCTTTAACACCAGGTACAAAGAGCTTCTTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCAGTTACAAAGAGCTTTAACACCAGGTACAAAGAGCTTCTTTCTC  150

seq1  ATTAGAAAATAGCCACCAATCTCTGCATTAAAGATCTTCTGTTTTTAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAAATAGCCACCAATCTCTGCATTAAAGATCTTCTGTTTTTAAGT  200

seq1  AGTGAAAAGGCAATCTTCTCCTGGGTCTTGACCCTGCTCCTTAAAAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAAGGCAATCTTCTCCTGGGTCTTGACCCTGCTCCTTAAAAACAA  250

seq1  TGGTCAAACAGTATAGGTCTAGACAACACCAGGTTTCAAGGAAAGGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAAACAGTATAGGTCTAGACAACACCAGGTTTCAAGGAAAGGTTTT  300

seq1  GCCCATGTAAAAAATCTAGCATGCCAAATGGCCAGATTTCAGTTTTTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATGTAAAAAATCTAGCATGCCAAATGGCCAGATTTCAGTTTTTACA  350

seq1  GCATATTAATGTATCACCAAACTATTTTTTAACTCAGAAATAAAATGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTAATGTATCACCAAACTATTTTTTAACTCAGAAATAAAATGTGA  400

seq1  TATTTGTAAATTTAGAATAAGAGCCATCATTTTCAATTTGTAGGAACTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTAAATTTAGAATAAGAGCCATCATTTTCAATTTGTAGGAACTAT  450

seq1  GTCGTGCCTGCTGTATTTTTGTGTATGTAAAAATATGTTTCTGAAATGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTGCCTGCTGTATTTTTGTGTATGTAAAAATATGTTTCTGAAATGAT  500

seq1  ATACAAAGTGAAATTTTAGAAACAAACAAATGAAAACACATGAAGTGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAGTGAAATTTTAGAAACAAACAAATGAAAACACATGAAGTGGAA  550

seq1  TAGTGAACCAATAGAATAGTTTTATTTGAATAGAGATTTTGGCATTTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAACCAATAGAATAGTTTTATTTGAATAGAGATTTTGGCATTTTCA  600

seq1  GTTTGGCATAATTCAGTTTTCTTAAGGAACCATTTTTGCACATATGTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGCATAATTCAGTTTTCTTAAGGAACCATTTTTGCACATATGTATG  650

seq1  GCTATTAAATATCATAAAGTACATGCAAATGTATTTATTTGTGTTGAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTAAATATCATAAAGTACATGCAAATGTATTTATTTGTGTTGAGCA  700

seq1  GTAATTGAAGTATGTATATGTGTGTACATGTAAGTTCATACTATTTGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTGAAGTATGTATATGTGTGTACATGTAAGTTCATACTATTTGAAA  750

seq1  TACAGAG-AACTAGAAAGTATGCAAAGTATGATGTGACAGAGATAATCAT  799
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGAAACTAGAAAGTATGCAAAGTATGATGTGACAGAGATAATCAT  800

seq1  GTTTTCACAGTCATCTTGGTTGACAGACAGAACAGATGAAATGAGTTCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCACAGTCATCTTGGTTGACAGACAGAACAGATGAAATGAGTTCAA  850

seq1  ATAGGACAGAGGACCAGCACACTAATGGTGCTGATTTCAGAGAGACCACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGACAGAGGACCAGCACACTAATGGTGCTGATTTCAGAGAGACCACA  900

seq1  GTTGACATCTCAGTTTTACCCCTTAATGAGAATCAATTTCCTTCTCTCTC  949
      ||||||||||||||||||||||||||||||||||| || |||||||||||
seq2  GTTGACATCTCAGTTTTACCCCTTAATGAGAATCATTTCCCTTCTCTCTC  950

seq1  AACTGAAAATAATCTCATCTGCCTTGGGAATGTTATAATTAATTGTAAGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAAATAATCTCATCTGCCTTGGGAATGTTATAATTAATTGTAAGC  1000

seq1  ATGTGCTTTTGG-TTCATAATTTTGCACCCTC-ACAGTGGCAGGTGCA-T  1046
      |||||||||||| ||||||  ||||||||||| ||||||||||||||| |
seq2  ATGTGCTTTTGGTTTCATA--TTTGCACCCTCAACAGTGGCAGGTGCATT  1048

seq1  TTTTATACATTTGTCCTGGACATGGTTGACA  1077
      ||||||||||||||||| ||||||  |||||
seq2  TTTTATACATTTGTCCT-GACATG--TGACA  1076


seq1: chr16_51692512_51693708
seq2: B6Ng01-266M20.g_67_1261 (reverse)

seq1  AAAGA-GTGAAAG-CCAGGATTTGCTGGCTTCAGAGTTTCCATCTCAGAA  48
      ||||| ||||||| |||||| ||||||||| || ||  || ||  |||| 
seq2  AAAGATGTGAAAGCCCAGGA-TTGCTGGCTCCA-AGAGTCAATTCCAGA-  47

seq1  TTTCCTTCTCTGCTGGTAGATCAATAAAAGTCCTTCT-CCCATTGAGAGG  97
        || |  | ||| |  ||||  |||||||| ||||| ||||||||||||
seq2  --TCGT--TTTGCAGTAAGATTCATAAAAGT-CTTCTCCCCATTGAGAGG  92

seq1  AGA-GTAGCTTCCTGAT--CTTGTGCAAATACTTAGCTACAGCCAG-AAT  143
      ||| |||||||||||||   |||||||||||| ||||||||||||| |||
seq2  AGAGGTAGCTTCCTGATTCTTTGTGCAAATAC-TAGCTACAGCCAGAAAT  141

seq1  ATCCTGGTGTTGTTGACTCCATATAATATGCAGTCACTTAACTAACCAGG  193
      ||||| |||||||||||||   |||||||||||||||||||||| |||||
seq2  ATCCT-GTGTTGTTGACTCATAATAATATGCAGTCACTTAACTACCCAGG  190

seq1  GAATGAAGAAGTGGGAATCTATGGCCTCTCAGGAAGTTATTGTGCAATGG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAAGAAGTGGGAATCTATGGCCTCTCAGGAAGTTATTGTGCAATGG  240

seq1  TTCAGATCTCTTCTGTGATGTAAAACAGTAAACAAGAAGGGCAAAA-CCA  292
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTCAGATCTCTTCTGTGATGTAAAACAGTAAACAAGAAGGGCAAAACCCA  290

seq1  AGGAGCACTTTAGGAACCAAAGACTAAAGAAGCTTCCAATTGCCTAGCTT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCACTTTAGGAACCAAAGACTAAAGAAGCTTCCAATTGCCTAGCTT  340

seq1  GATTAAAGCGAGAGGATGCAAGCCTGAAGGAATAATGACAGAGAAGAACG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGCGAGAGGATGCAAGCCTGAAGGAATAATGACAGAGAAGAACG  390

seq1  TAAAGAAGGCTAATGGTCTGGGATGCATAGTCTTGTGAGTGGAAGAGAAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAGGCTAATGGTCTGGGATGCATAGTCTTGTGAGTGGAAGAGAAA  440

seq1  GCCTCCCTTTTGTATATGATTTTTATCTACAGCATTTACTACAAGTACTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCTTTTGTATATGATTTTTATCTACAGCATTTACTACAAGTACTT  490

seq1  CAAGTTATCTTCAAGGAATCAATAGACAAAGAGATTCAGTCCACTTACTC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTATCTTCAAGGAATCAATAGACAAAGAGATTCAGTCCACTTACTC  540

seq1  CCAACCTGTCTGAAATATACATTGGCCTCAAAATCTCACATGCCTGTTTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCTGTCTGAAATATACATTGGCCTCAAAATCTCACATGCCTGTTTT  590

seq1  CTTTGAATAAAGTAAGTTGTAAAGTCAAATTTCTCACTAATACTTAGGCA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAATAAAGTAAGTTGTAAAGTCAAATTTCTCACTAATACTTAGGCA  640

seq1  AATATTGGTAATAATAGTGGGTATTTAGGATAAAGTTTGTTTTTAGAGTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGGTAATAATAGTGGGTATTTAGGATAAAGTTTGTTTTTAGAGTT  690

seq1  AATATATCTATTTAACAAAAATGACTCCAGCTAAGCGAATGCAGGGATAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATCTATTTAACAAAAATGACTCCAGCTAAGCGAATGCAGGGATAT  740

seq1  TCAGAGACAAAATCAGGTGAGTCCATGGCAGGGCTGGCCAGACATGGAGA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGACAAAATCAGGTGAGTCCATGGCAGGGCTGGCCAGACATGGAGA  790

seq1  AGAGTGCAAAAAGGTCCATACTTATCATCATGAACAAAACTCAACAACAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGCAAAAAGGTCCATACTTATCATCATGAACAAAACTCAACAACAA  840

seq1  GTGAATCAAAAACCTCAATATAAGACGAGATGCACTGAATCTGATAAAAG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATCAAAAACCTCAATATAAGACGAGATGCACTGAATCTGATAAAAG  890

seq1  AGAAAGTGGGGAATAATCCTGAGCTCAATGTTACAGAAAAAGACTTCCTG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTGGGGAATAATCCTGAGCTCAATGTTACAGAAAAAGACTTCCTG  940

seq1  AATTGAACACGAATAGCACAGTCAATAAGAACAAAAATTAATAAATGGGA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAACACGAATAGCACAGTCAATAAGAACAAAAATTAATAAATGGGA  990

seq1  CCTCCTAAAACTGAAAATAAAAAAAAATAGTAAAGAACACCATCTTTGGG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTAAAACTGAAAATAAAAAAAAATAGTAAAGAACACCATCTTTGGG  1040

seq1  ACAATGCAGTAGCCTATAGAATGGAAAAAGAGTGTATTAGGTGCATATCC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCAGTAGCCTATAGAATGGAAAAAGAGTGTATTAGGTGCATATCC  1090

seq1  AGATGGAAAGCTAATATCCACAATAGAGAGAGGACTCAGAAAAACCTGCA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAAAGCTAATATCCACAATAGAGAGAGGACTCAGAAAAACCTGCA  1140

seq1  TAACAAGAAACAAATAACAAAATTGAAAAATGGGGTACAGATCTAAACAG  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGAAACAAATAACAAAATTGAAAAATGGGGTACAGATCTAAACAG  1190

seq1  AATTC  1197
      |||||
seq2  AATTC  1195


| Home | SequenceCutter | Blast | Download |