BAC Information

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BAC

Clone NameB6Ng01-268L13
ChromosomeX (Build37)16 (Build37)
Map Location 117,470,128 - 117,470,98066,272,819 - 66,273,955
singlet/doubletsingletsinglet
Overlap genePcdh11x
Upstream geneLOC385417, Pabpc5, LOC236983, LOC674318, EG545741, LOC100039461, H2afb3
Downstream geneLOC245576, LOC385419, EG434907
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268L13.bB6Ng01-268L13.g
ACCGA071505GA071506
length1,0091,130
definitionB6Ng01-268L13.b B6Ng01-268L13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(117,470,128 - 117,470,980)(66,272,819 - 66,273,955)
sequence
gaattctccctgggcacgtgtgaattgtacctggagcatttcacccccat
accggctgctgatcaagggcttctcaatgctgaatcttgaccctgaatct
cagttttatgatgacagttcctggtatctactggctgggggaggggggtg
ttttgtccatattcaaaaagtgcacaccacatacctctaatcaagaaaga
tctggcaacttttaaaatgggtcttcctgccttgtttctaacctgcaaaa
agtatctttgcttaaagattcatttaaatatttcaacattatttctgtgc
atgtttttgtttttgtttctgtaaggttaaaaaacaaggctaattggtga
cttttttttttttttactttacttaataataataaataaataaataacag
gtgaacaacagatggtgtatgcaatcataatactacattttagtgtatct
ctactaatggtgcattttaataatgaataaagaattctccatttaaaaag
agtataacagtacccgggcctgacctcgggcacaagccccttccgctcca
ctcgagccccgagctatcttgccagcggagttgcctgacacccgcaaggg
cccacacaggattccccacgggatcctaagacctctggtgagtggaacac
agcaccggccccaatccaatcgcccagaacctgagactgtggtacatagg
gaagcagactacccaggcctgacctggggcacaagccccttccgctccac
tcgagccccgggctaccttgccagcgaagtcgcctgacacccgcaagggc
ccacacaggattccaacagggatcctaagacctctagtgagtagaacaca
acttctaccaggagtccgggttcgaacaccagatatctgggtaccttccc
tgcaagaagagagctttcctgcagagatactctacccactgaaactaagg
agagtgctaccctcccaggttctgcttatagaggctaacagagtcacctg
gagaacaag
gaattctctcaacccttcaaaccttagcatcggttctccatgggtcttag
tattttctctcagaagagatggtccagggtacctagagagtgcaacagta
aagagggcttaggagtggacttcttttattctttgagagaacattggatg
cacttgaaattgacagaccataaaattttatagaaccttttgccttctga
gctattaagtggctggtaaaaggcaaaggttaataaactcctcttgctca
ctttatgctattgcaaattatttccctctcacttgcgaacttgctaatgt
tttgtcttaagcatacttcttaaatctgtcttactctcggctttaccact
atcctaatgcagactattagcaattttaaaagtcgattctgaaccgcgcc
attgccagcagattcaatatttttctccataaaaacacgaagacttcagt
ctaataaaatgtaaacgtgagtgaaaccgcttgttccccccctcccccca
agcagtggaacaatctacgctcttccttctgaaggatgctgtgtagctca
catgcacaattcaaatgttgttgagggaataatagatgatgcgcagacaa
agagaatgtaaaactaagacatttcatctatcccggtttctgcctgcctt
tcctgtttgtgtcatccatgctgtaacccctaccccaatggaataagaga
tattttatttaccacagcccagaaagatgaaatcgtatcatcccaatatc
atattgtaatgtggtagccattttatgaagtatttctgtaggagcagaag
aaaagttagtcataaatacacttttggaaaactaagggaaaatagcagta
gcagggtagagcaaagtagagacatctctgctaagagcctcagaactgct
agtcgttgtgttactggggaaatgaaattggattccttcgtagtcttgtt
atgtgccgtagagctcagagtgtgattgtacataccaaagagctgagttg
tatcccctgcacttccggggctgcagcactcaagttccgattcacatcag
cagagctcatatcttccatatgctagctcgtttgtctactcttgccagaa
ttgatgaactcatactagagagatagaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_117470128_117470980
seq2: B6Ng01-268L13.b_199_1052 (reverse)

seq1  CTTGTTCTTCAGGTGACTCTGTTAGCCTCTATAAGCAG-ACCTGGGAGGG  49
      |||||||| ||||||||||||||||||||||||||||| |||||||||||
seq2  CTTGTTCTCCAGGTGACTCTGTTAGCCTCTATAAGCAGAACCTGGGAGGG  50

seq1  TAGCACTCTCCTTAGTTTCAGTGGGTAGAGTATTCTCTGCAGGAAAGCTC  99
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAGCACTCTCCTTAGTTTCAGTGGGTAGAGTA-TCTCTGCAGGAAAGCTC  99

seq1  TCTTCTTGCAGGGAAGGTACCCAGATATCTGGTGTTCGAA-CCGGACTCC  148
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCTTCTTGCAGGGAAGGTACCCAGATATCTGGTGTTCGAACCCGGACTCC  149

seq1  TGGTAGAAGTTGTGTTCTACTCACTAGAGGTCTTAGGATCCCTGTTGGAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGAAGTTGTGTTCTACTCACTAGAGGTCTTAGGATCCCTGTTGGAA  199

seq1  TCCTGTGTGGGCCCTTGCGGGTGTCAGGCGACTTCGCTGGCAAGGTAGCC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGTGGGCCCTTGCGGGTGTCAGGCGACTTCGCTGGCAAGGTAGCC  249

seq1  CGGGGCTCGAGTGGAGCGGAAGGGGCTTGTGCCCCAGGTCAGGCCTGGGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGCTCGAGTGGAGCGGAAGGGGCTTGTGCCCCAGGTCAGGCCTGGGT  299

seq1  AGTCTGCTTCCCTATGTACCACAGTCTCAGGTTCTGGGCGATTGGATTGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCTTCCCTATGTACCACAGTCTCAGGTTCTGGGCGATTGGATTGG  349

seq1  GGCCGGTGCTGTGTTCCACTCACCAGAGGTCTTAGGATCCCGTGGGGAAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGGTGCTGTGTTCCACTCACCAGAGGTCTTAGGATCCCGTGGGGAAT  399

seq1  CCTGTGTGGGCCCTTGCGGGTGTCAGGCAACTCCGCTGGCAAGATAGCTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTGGGCCCTTGCGGGTGTCAGGCAACTCCGCTGGCAAGATAGCTC  449

seq1  GGGGCTCGAGTGGAGCGGAAGGGGCTTGTGCCCGAGGTCAGGCCCGGGTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTCGAGTGGAGCGGAAGGGGCTTGTGCCCGAGGTCAGGCCCGGGTA  499

seq1  CTGTTATACTCTTTTTAAATGGAGAATTCTTTATTCATTATTAAAATGCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATACTCTTTTTAAATGGAGAATTCTTTATTCATTATTAAAATGCA  549

seq1  CCATTAGTAGAGATACACTAAAATGTAGTATTATGATTGCATACACCATC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAGTAGAGATACACTAAAATGTAGTATTATGATTGCATACACCATC  599

seq1  TGTTGTTCACCTGTTATTTATTTATTTATTATTATTAAGTAAAGTAAAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTCACCTGTTATTTATTTATTTATTATTATTAAGTAAAGTAAAAA  649

seq1  AAAAAAAAAGTCACCAATTAGCCTTGTTTTTTAACCTTACAGAAACAAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGTCACCAATTAGCCTTGTTTTTTAACCTTACAGAAACAAAA  699

seq1  ACAAAAACATGCACAGAAATAATGTTGAAATATTTAAATGAATCTTTAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACATGCACAGAAATAATGTTGAAATATTTAAATGAATCTTTAAG  749

seq1  CAAAGATACTTTTTGCAGGTTAGAAACAAGGCAGGAAGACCCATTTTAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATACTTTTTGCAGGTTAGAAACAAGGCAGGAAGACCCATTTTAAA  799

seq1  AGTTGCCAGATCTTTCTTGATTAGAGGTATGTGGTGTGCACTTTTTGAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCCAGATCTTTCTTGATTAGAGGTATGTGGTGTGCACTTTTTGAAT  849

seq1  ATGGA  853
      |||||
seq2  ATGGA  854

seq1: chr16_66272819_66273955
seq2: B6Ng01-268L13.g_63_1192 (reverse)

seq1  GGTTCTATCTCT-AGGTATGAGGTCATCATATCTGGCAAGAGTAAGACAA  49
      ||||||||||||   ||||||| ||||||  |||||||||||| ||||||
seq2  GGTTCTATCTCTCTAGTATGAGTTCATCAATTCTGGCAAGAGT-AGACAA  49

seq1  AGAAAGCAAG-ATATGGAAGATATGAGCTCCTGCTGGAATGTGGAATCCG  98
      |   ||| || |||||||||||||||||| ||||||  |||| ||||| |
seq2  A-CGAGCTAGCATATGGAAGATATGAGCT-CTGCTG--ATGT-GAATCGG  94

seq1  GACCTGAGTGCTGCCAAGCCCCGGAAGTGCAGGGGATACAACTCAGCTCC  148
       || ||||||||||  ||||||||||||||||||||||||||||||||| 
seq2  AACTTGAGTGCTGC--AGCCCCGGAAGTGCAGGGGATACAACTCAGCTCT  142

seq1  TTGGTATGTACAATCAACACTCTGAGCTCTACGCCACATAACAAGACTAC  198
      ||||||||||||||| ||||||||||||||||| ||||||||||||||||
seq2  TTGGTATGTACAATC-ACACTCTGAGCTCTACGGCACATAACAAGACTAC  191

seq1  GAAGGAATCCAATTTCATTTCCCCAGTAACACAACGACTAGCAGTTCTGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAATCCAATTTCATTTCCCCAGTAACACAACGACTAGCAGTTCTGA  241

seq1  GGCTCTTAGCAGAGATGTCTCTACTTTGCTCTACCCTGCTACCTGCTATT  298
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGCTCTTAGCAGAGATGTCTCTACTTTGCTCTACCCTGCTA-CTGCTATT  290

seq1  TT-CCTTAGTTTTCCAAAAGTGTATTTATGACTAACTTTTCTTCTGCTCC  347
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTAGTTTTCCAAAAGTGTATTTATGACTAACTTTTCTTCTGCTCC  340

seq1  TACAGAAATACTTCATAAAATGGCTACCACATTACAATATGATATTGGGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAATACTTCATAAAATGGCTACCACATTACAATATGATATTGGGA  390

seq1  TGATACGATTTCATCTTTCTGGGCTGTGGTAAATAAAATATCTCTTATTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACGATTTCATCTTTCTGGGCTGTGGTAAATAAAATATCTCTTATTC  440

seq1  CATTGGGGTAGGGGTTACAGCATGGATGACACAAACAGGAAAGGCAGGCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGGTAGGGGTTACAGCATGGATGACACAAACAGGAAAGGCAGGCA  490

seq1  GAAACCGGGATAGATGAAATGTCTTAGTTTTACATTCTCTTTGTCTGCGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCGGGATAGATGAAATGTCTTAGTTTTACATTCTCTTTGTCTGCGC  540

seq1  ATCATCTATTATTCCCTCAACAACATTTGAATTGTGCATGTGAGCTACAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTATTATTCCCTCAACAACATTTGAATTGTGCATGTGAGCTACAC  590

seq1  AGCATCCTTCAGAAGGAAGAGCGTAGATTGTTCCACTGCTTGGGGGGAGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCTTCAGAAGGAAGAGCGTAGATTGTTCCACTGCTTGGGGGGAGG  640

seq1  GGGGGAACAAGCGGTTTCACTCACGTTTACATTTTATTAGACTGAAGTCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAACAAGCGGTTTCACTCACGTTTACATTTTATTAGACTGAAGTCT  690

seq1  TCGTGTTTTTATGGAGAAAAATATTGAATCTGCTGGCAATGGCGCGGTTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGTTTTTATGGAGAAAAATATTGAATCTGCTGGCAATGGCGCGGTTC  740

seq1  AGAATCGACTTTTAAAATTGCTAATAGTCTGCATTAGGATAGTGGTAAAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCGACTTTTAAAATTGCTAATAGTCTGCATTAGGATAGTGGTAAAG  790

seq1  CCGAGAGTAAGACAGATTTAAGAAGTATGCTTAAGACAAAACATTAGCAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGAGTAAGACAGATTTAAGAAGTATGCTTAAGACAAAACATTAGCAA  840

seq1  GTTCGCAAGTGAGAGGGAAATAATTTGCAATAGCATAAAGTGAGCAAGAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGCAAGTGAGAGGGAAATAATTTGCAATAGCATAAAGTGAGCAAGAG  890

seq1  GAGTTTATTAACCTTTGCCTTTTACCAGCCACTTAATAGCTCAGAAGGCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTATTAACCTTTGCCTTTTACCAGCCACTTAATAGCTCAGAAGGCA  940

seq1  AAAGGTTCTATAAAATTTTATGGTCTGTCAATTTCAAGTGCATCCAATGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTCTATAAAATTTTATGGTCTGTCAATTTCAAGTGCATCCAATGT  990

seq1  TCTCTCAAAGAATAAAAGAAGTCCACTCCTAAGCCCTCTTTACTGTTGCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCAAAGAATAAAAGAAGTCCACTCCTAAGCCCTCTTTACTGTTGCA  1040

seq1  CTCTCTAGGTACCCTGGACCATCTCTTCTGAGAGAAAATACTAAGACCCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTAGGTACCCTGGACCATCTCTTCTGAGAGAAAATACTAAGACCCA  1090

seq1  TGGAGAACCGATGCTAAGGTTTGAAGGGTTGAGAGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAACCGATGCTAAGGTTTGAAGGGTTGAGAGAATTC  1130