BAC Information

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BAC

Clone NameB6Ng01-269K24
Chromosome16 (Build37)
Map Location 90,101,538 - 90,285,324
singlet/doubletdoublet
Overlap geneLOC640694, LOC100040440, Sod1, Sfrs15
Upstream geneLOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik, Tiam1, LOC100040496
Downstream geneLOC545175, Hunk, 2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2, Olig1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269K24.bB6Ng01-269K24.g
ACCGA072215GA072216
length1,121727
definitionB6Ng01-269K24.b B6Ng01-269K24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,101,538 - 90,102,662)(90,284,598 - 90,285,324)
sequence
gaattcttgacctaacacaattgcttcaatcaagcccatctggagtcctt
ggaatgaggacagcaggagctgagtggagattttataaagaagaaggaag
caatcagtgaattggcctgacctcgacagaggttagaaacaagtgtctga
gctaggaagatgtccggtgaccactgcagctccccctcatcatggtgccc
acacagagaatagctgatgtgttctcagacccacagcccgggcactgcca
tccgcaaggatttctaccctgtctgattacttcccatcacagcaggcacc
agcctcggtctgcctttccatccagagctcacgtcccttcctctatggtg
ctatggtgctctctgcaacccattcttgctctctcttgtgttctctctct
ctctttctctctatggtgctctctgcaacccattcttgctctctctggtg
ttctctctctctctctctctctctctctctctcacacacacacacacaca
cccaccttccttatctacttaaaattttatgagaaagtgaccatagctta
aaattcagaattttgacccttttcaatgcctaatatccaagcattcaaga
cactgaagcaggaggatctcaagtttagggacatcctggactacatatga
agttccaaagccggccaggacaatttaacaacattctgtttcaatgacaa
ataaacacaggactagagagacggctcaatggttaagagcactgctcttc
cagagaaccatggttcactccctaatacccacgtggtagcttacaaccat
ctagaactccagttctaaggggtctgatgctcgcttctgacctcgatggg
caccaggcacagacatggtatacacacatacatgcaggcaaaacactctt
acaaataaaataaacaaatctaaaaaccgtttaaacaaacaagaggctaa
ggggatgacttggtgggtacagctcactgtgcagacatgagaacctaagt
tctagcatccatatagagctgagcgtgacgaccacacgccagcccagcac
cgagagttgaggacgaaagggcgcgatggcttcacttgtcaggcaactgc
caatcagctccattccaggtt
gaattcttttaggatgctcgcccttttctacgggaagtagtccccaactt
ccagtacgagtcaggccttctagcttttatactcatgctccacaaaagtg
aggtttctacagaaaaactttcatttttcacacacccaacagacagcggt
cgcagcgcgcggcaggcggtgagaactcaagtgaatcagaacacacttct
gccgagagcgacccaacggggtttggggagattagcgttaggggttcagg
agcccagtcctcggaagttgctcagggcgtccaccaggtccgcacgcaag
tcgaagcaggggacttggagactgcagacgctcaccctccgcgctttgtt
tgtcgcagcagcagggcgcagtcctgcccggacacaatgcaccccgggag
ccgtcgtccggatcctgagcccagaagacgggaactctccgcagccgcaa
ccggcgggaaagcgcgcgacaacgcgcggtcacacgctagcggctcggcg
ccggtggggcgcggaggggcggggcgtgggcggagccaagcacgagcggg
gcggagccgggctcaggaagcgcttggaggcccgagctgtcccagggtgc
ttcgcgcggcgtgcactcgggtcgctgccgccatcctgctggcgaaagag
aggagagagacagagaggcccgcccgctcgccggccgggccagtgtgggc
cagtgcgtgagggagggcgcggggggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_90101538_90102662
seq2: B6Ng01-269K24.b_48_1168

seq1  GAATTCTTGACCTAACACAATTGCTTCAATCAAGCCCATCTGGAGTCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGACCTAACACAATTGCTTCAATCAAGCCCATCTGGAGTCCTT  50

seq1  GGAATGAGGACAGCAGGAGCTGAGTGGAGATTTTATAAAGAAGAAGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGAGGACAGCAGGAGCTGAGTGGAGATTTTATAAAGAAGAAGGAAG  100

seq1  CAATCAGTGAATTGGCCTGACCTCGACAGAGGTTAGAAACAAGTGTCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGTGAATTGGCCTGACCTCGACAGAGGTTAGAAACAAGTGTCTGA  150

seq1  GCTAGGAAGATGTCCGGTGACCACTGCAGCTCCCCCTCATCATGGTGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGAAGATGTCCGGTGACCACTGCAGCTCCCCCTCATCATGGTGCCC  200

seq1  ACACAGAGAATAGCTGATGTGTTCTCAGACCCACAGCCCGGGCACTGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGAATAGCTGATGTGTTCTCAGACCCACAGCCCGGGCACTGCCA  250

seq1  TCCGCAAGGATTTCTACCCTGTCTGATTACTTCCCATCACAGCAGGCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCAAGGATTTCTACCCTGTCTGATTACTTCCCATCACAGCAGGCACC  300

seq1  AGCCTCGGTCTGCCTTTCCATCCAGAGCTCACGTCCCTTCCTCTATGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCGGTCTGCCTTTCCATCCAGAGCTCACGTCCCTTCCTCTATGGTG  350

seq1  CTATGGTGCTCTCTGCAACCCATTCTTGCTCTCTCTTGTGTTCTCTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGTGCTCTCTGCAACCCATTCTTGCTCTCTCTTGTGTTCTCTCTCT  400

seq1  CTCTTTCTCTCTATGGTGCTCTCTGCAACCCATTCTTGCTCTCTCTGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTCTCTATGGTGCTCTCTGCAACCCATTCTTGCTCTCTCTGGTG  450

seq1  TTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACA  500

seq1  CCCACCTTCCTTATCTACTTAAAATTTTATGAGAAAGTGACCATAGCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTTCCTTATCTACTTAAAATTTTATGAGAAAGTGACCATAGCTTA  550

seq1  AAATTCAGAATTTTGACCCTTTTCAATGCCTAATATCCAAGCATTCAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAGAATTTTGACCCTTTTCAATGCCTAATATCCAAGCATTCAAGA  600

seq1  CACTGAAGCAGGAGGATCTCAAGTTTAGGGACATCCTGGACTACATATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAGCAGGAGGATCTCAAGTTTAGGGACATCCTGGACTACATATGA  650

seq1  AGTTCCAAAGCCGGCCAGGACAATTTAACAACATTCTGTTTCAATGACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAAAGCCGGCCAGGACAATTTAACAACATTCTGTTTCAATGACAA  700

seq1  ATAAACACAGGACTAGAGAGACGGCTCAATGGTTAAGAGCACTGCTCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACACAGGACTAGAGAGACGGCTCAATGGTTAAGAGCACTGCTCTTC  750

seq1  CAGAGAACCATGGTTCACTCCCTAATACCCACGTGGTAGCTTACAACCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAACCATGGTTCACTCCCTAATACCCACGTGGTAGCTTACAACCAT  800

seq1  CTAGAACTCCAGTTCTAAGGGGTCTGATGCTCGCTTCTGACCTCGATGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACTCCAGTTCTAAGGGGTCTGATGCTCGCTTCTGACCTCGATGGG  850

seq1  CACCAGGCACAGACATGGTATACACACATACATGCAGGCAAAACACTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGGCACAGACATGGTATACACACATACATGCAGGCAAAACACTCTT  900

seq1  ACAAATAAAATAAACAAATCTAAAAAACCGTTTAAACAAACAAGAGGCTA  950
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACAAATAAAATAAACAAATCT-AAAAACCGTTTAAACAAACAAGAGGCTA  949

seq1  AGGGGATGACTTGGTGGGTACAAGCTCACTGTGCAGACATGAGAACCTAA  1000
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGGGGATGACTTGGTGGGTAC-AGCTCACTGTGCAGACATGAGAACCTAA  998

seq1  GTTCTAGCATCCATATAGAGCTGAGCGTGACGACCACACGCAAGCCCAGC  1050
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTTCTAGCATCCATATAGAGCTGAGCGTGACGACCACACGCCAGCCCAGC  1048

seq1  ACCGAGAGGTGGAGACAGAAAGGCCGGCATGGC-TCACTGGTCAGCCAAC  1099
      |||||||| ||  ||| |||||| ||  ||||| ||||| ||||| ||||
seq2  ACCGAGAGTTGAGGAC-GAAAGGGCGCGATGGCTTCACTTGTCAGGCAAC  1097

seq1  CTGGCCAATCAGCTCCATTCCAGGTT  1125
         |||||||||||||||||||||||
seq2  --TGCCAATCAGCTCCATTCCAGGTT  1121

seq1: chr16_90284598_90285324
seq2: B6Ng01-269K24.g_69_795 (reverse)

seq1  GCCCCCCGCGCCCTCCCTCACGCACTGGCCCACACTGGCCCGGCCGGCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCCGCGCCCTCCCTCACGCACTGGCCCACACTGGCCCGGCCGGCGA  50

seq1  GCGGGCGGGCCTCTCTGTCTCTCTCCTCTCTTTCGCCAGCAGGATGGCGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGCGGGCCTCTCTGTCTCTCTCCTCTCTTTCGCCAGCAGGATGGCGG  100

seq1  CAGCGACCCGAGTGCACGCCGCGCGAAGCACCCTGGGACAGCTCGGGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGACCCGAGTGCACGCCGCGCGAAGCACCCTGGGACAGCTCGGGCCT  150

seq1  CCAAGCGCTTCCTGAGCCCGGCTCCGCCCCGCTCGTGCTTGGCTCCGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCGCTTCCTGAGCCCGGCTCCGCCCCGCTCGTGCTTGGCTCCGCCC  200

seq1  ACGCCCCGCCCCTCCGCGCCCCACCGGCGCCGAGCCGCTAGCGTGTGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCCCGCCCCTCCGCGCCCCACCGGCGCCGAGCCGCTAGCGTGTGACC  250

seq1  GCGCGTTGTCGCGCGCTTTCCCGCCGGTTGCGGCTGCGGAGAGTTCCCGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGTTGTCGCGCGCTTTCCCGCCGGTTGCGGCTGCGGAGAGTTCCCGT  300

seq1  CTTCTGGGCTCAGGATCCGGACGACGGCTCCCGGGGTGCATTGTGTCCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGGCTCAGGATCCGGACGACGGCTCCCGGGGTGCATTGTGTCCGG  350

seq1  GCAGGACTGCGCCCTGCTGCTGCGACAAACAAAGCGCGGAGGGTGAGCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACTGCGCCCTGCTGCTGCGACAAACAAAGCGCGGAGGGTGAGCGT  400

seq1  CTGCAGTCTCCAAGTCCCCTGCTTCGACTTGCGTGCGGACCTGGTGGACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTCTCCAAGTCCCCTGCTTCGACTTGCGTGCGGACCTGGTGGACG  450

seq1  CCCTGAGCAACTTCCGAGGACTGGGCTCCTGAACCCCTAACGCTAATCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGCAACTTCCGAGGACTGGGCTCCTGAACCCCTAACGCTAATCTC  500

seq1  CCCAAACCCCGTTGGGTCGCTCTCGGCAGAAGTGTGTTCTGATTCACTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACCCCGTTGGGTCGCTCTCGGCAGAAGTGTGTTCTGATTCACTTG  550

seq1  AGTTCTCACCGCCTGCCGCGCGCTGCGACCGCTGTCTGTTGGGTGTGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCACCGCCTGCCGCGCGCTGCGACCGCTGTCTGTTGGGTGTGTGA  600

seq1  AAAATGAAAGTTTTTCTGTAGAAACCTCACTTTTGTGGAGCATGAGTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAAGTTTTTCTGTAGAAACCTCACTTTTGTGGAGCATGAGTATA  650

seq1  AAAGCTAGAAGGCCTGACTCGTACTGGAAGTTGGGGACTACTTCCCGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAGAAGGCCTGACTCGTACTGGAAGTTGGGGACTACTTCCCGTAG  700

seq1  AAAAGGGCGAGCATCCTAAAAGAATTC  727
      |||||||||||||||||||||||||||
seq2  AAAAGGGCGAGCATCCTAAAAGAATTC  727