BAC Information

Click to search

BAC

Clone NameB6Ng01-270M14
Chromosome16 (Build37)
Map Location 91,372,797 - 91,512,189
singlet/doubletdoublet
Overlap geneIfnar2, Il10rb, Ifnar1
Upstream geneHunk, 2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2, Olig1
Downstream geneLOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653, Itsn1, Atp5o, Mrps6, Slc5a3, Kcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik, Clic6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270M14.bB6Ng01-270M14.g
ACCGA073038GA073039
length1,167539
definitionB6Ng01-270M14.b B6Ng01-270M14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,372,797 - 91,373,977)(91,511,645 - 91,512,189)
sequence
atcctcctgccaaggccttcctggaagaagagagtacacacccgcatcac
taggccaggcacccaacccattcgtatccagttagttctagggatcaggc
actacctagtcctccaaggaggcagcgataaacacaacaaccccgatccg
ttaactctggctccctggactgtacttgaagtgggtggggtcgtaatgga
tgcgaaagtgcccatttgtcgccggctccgcccgggccccgcctctcgcc
tcgttctctgttcaccgctaaccccgcggctgggaacccttggcctccgg
gagcctgcgtggtctagccctagaccaggggaaaccaggctgccagcgga
gactcttcgggtcgcggggcaccggccatcccgccgccgtccctttcgcc
tggctcggctcccgcctgcctccactgctcgccagccgcgcgcagctgcg
cctgatgcccagagcagctcggaggtggccccaggacatcccagaggggg
attcacgagacccggcgattcaggtactgtactgcgggcattacggggac
atgaatgggtgtcgctcgcctcgcggacagtaggactgggccgcctcccc
gctgccagttcccggaatccccttttcaattctcctcttcgggactccgc
ctcttcctgcctttcttccgtggagagtctgaggattctagctcccccga
cccacaagctgcgtatggggggccctcgtggcccccgcatgggcgccttc
ctttcaccgttcctttggtgaactctgggtttttgtgggctctctgcctt
cactccaccagcgtcgcctcaccgagggtgcatggggcaccttagcccga
gccattgccagatcctagggggtccacattccttaggatccactacgcct
tgccaagctagttatcatctccagcctctgggttctgttctgcgtctgac
accctccccttaacacacaccacacacacacacacacacacacacacaca
cacacacacacacctgcgcgcctgaaacttacctaaggtcccagggatcg
tttgttcagctcttacgaggtcactgaggtgtgacccgcagagatgccag
gaatggaatacagaaggcactgataatggttagccttgcatttcttattc
aagccagccaagtagtg
cttcttgcctttgttcctccaggtggagaaaaagacttatcccagtaaaa
aagcattccatcacagaaatccatgtgtattacgcatgccctcaagacca
gcaattctgtgatcactgtaagcctgagaagagttgtaagaaaaagctga
atggggcctggggacactgcccaccggacaagtgcttggtgtgcaagtgt
gaagtcctgagtacaaacctccaatacctaacaaaaaagccagacttcac
tgttcatacccagtcctagcattgggcacagacagggagattcccagagc
ttactggtcaaccagctaaggcagaatggtgagcttcctctcctgtgaga
ggtcttgtttcaagacgatagggtggaggacaacatcctatgtttacctt
cacatgtgcgcatgggtacggacatgtgtgacacctgtgtactcacattc
ctgctcaggagtgtgcacacccatgtgtacagcacagcagacacacaggg
gtgggggagagcgagagggggagggacaggggaagagcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_91372797_91373977
seq2: B6Ng01-270M14.b_52_1218

seq1  ATCCTCCTGCCAAGGCCTTCCTGGAAGAAGAGAGTACACACCCGCATCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCTGCCAAGGCCTTCCTGGAAGAAGAGAGTACACACCCGCATCAC  50

seq1  TAGGCCAGGCACCCAACCCATTCGTATCCAGTTAGTTCTAGGGATCAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCAGGCACCCAACCCATTCGTATCCAGTTAGTTCTAGGGATCAGGC  100

seq1  ACTACCTAGTCCTCCAAGGAGGCAGCGATAAACACAACAACCCCGATCCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCTAGTCCTCCAAGGAGGCAGCGATAAACACAACAACCCCGATCCG  150

seq1  TTAACTCTGGCTCCCTGGACTGTACTTGAAGTGGGTGGGGTCGTAATGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCTGGCTCCCTGGACTGTACTTGAAGTGGGTGGGGTCGTAATGGA  200

seq1  TGCGAAAGTGCCCATTTGTCGCCGGCTCCGCCCGGGCCCCGCCTCTCGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAAAGTGCCCATTTGTCGCCGGCTCCGCCCGGGCCCCGCCTCTCGCC  250

seq1  TCGTTCTCTGTTCACCGCTAACCCCGCGGCTGGGAACCCTTGGCCTCCGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTCTCTGTTCACCGCTAACCCCGCGGCTGGGAACCCTTGGCCTCCGG  300

seq1  GAGCCTGCGTGGTCTAGCCCTAGACCAGGGGAAACCAGGCTGCCAGCGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGCGTGGTCTAGCCCTAGACCAGGGGAAACCAGGCTGCCAGCGGA  350

seq1  GACTCTTCGGGTCGCGGGGCACCGGCCATCCCGCCGCCGTCCCTTTCGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTCGGGTCGCGGGGCACCGGCCATCCCGCCGCCGTCCCTTTCGCC  400

seq1  TGGCTCGGCTCCCGCCTGCCTCCACTGCTCGCCAGCCGCGCGCAGCTGCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCGGCTCCCGCCTGCCTCCACTGCTCGCCAGCCGCGCGCAGCTGCG  450

seq1  CCTGATGCCCAGAGCAGCTCGGAGGTGGCCCCAGGACATCCCAGAGGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGCCCAGAGCAGCTCGGAGGTGGCCCCAGGACATCCCAGAGGGGG  500

seq1  ATTCACGAGACCCGGCGATTCAGGTACTGTACTGCGGGCATTACGGGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACGAGACCCGGCGATTCAGGTACTGTACTGCGGGCATTACGGGGAC  550

seq1  ATGAATGGGTGTCGCTCGCCTCGCGGACAGTAGGACTGGGCCGCCTCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGGGTGTCGCTCGCCTCGCGGACAGTAGGACTGGGCCGCCTCCCC  600

seq1  GCTGCCAGTTCCCGGAATCCCCTTTTCAATTCTCCTCTTCGGGACTCCGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCAGTTCCCGGAATCCCCTTTTCAATTCTCCTCTTCGGGACTCCGC  650

seq1  CTCTTCCTGCCTTTCTTCCGTGGAGAGTCTGAGGATTCTAGCTCCCCCGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTGCCTTTCTTCCGTGGAGAGTCTGAGGATTCTAGCTCCCCCGA  700

seq1  CCCACAAGCTGCGTATGGGGGGCCCTCGTGGCCCCCGCATGGGCGCCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAAGCTGCGTATGGGGGGCCCTCGTGGCCCCCGCATGGGCGCCTTC  750

seq1  CTTTCACCGTTCCTTTGGTGAACTCTGGGTTTTTGTGGGCTCTCTGCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACCGTTCCTTTGGTGAACTCTGGGTTTTTGTGGGCTCTCTGCCTT  800

seq1  CACTCCACCAGCGTCGCCTCACCGAGGGTGCATGGGGCACCTTAGCCCGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCACCAGCGTCGCCTCACCGAGGGTGCATGGGGCACCTTAGCCCGA  850

seq1  GCCATTGCCAGATCCTAGGGGGTCCACATTCCTTAGGATCCACTACGCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTGCCAGATCCTAGGGGGTCCACATTCCTTAGGATCCACTACGCCT  900

seq1  TGCCAAGCTAGTTATCATCTCCAGCCTCTGGGTCCTGTTCTGCGTCCTGA  950
      ||||||||||||||||||||||||||||||||| ||||||||||| ||||
seq2  TGCCAAGCTAGTTATCATCTCCAGCCTCTGGGTTCTGTTCTGCGT-CTGA  949

seq1  CACCCCTCCCCCTACACACACACACACACACACACACACACACACACACA  1000
      || |||||||| || |||||||| ||||||||||||||||||||||||||
seq2  CA-CCCTCCCCTTA-ACACACAC-CACACACACACACACACACACACACA  996

seq1  CACACACACACACACACACTGCGCGCCCTGAAACCTACCTAAGGTCCCA-  1049
      ||||||||||||||||| ||||||| |||||||| |||||||||||||| 
seq2  CACACACACACACACAC-CTGCGCG-CCTGAAACTTACCTAAGGTCCCAG  1044

seq1  GGATCGTTTGTTCAAGCTCCTACGAGGTCACTGAAGGGGTTGTGGCCCGC  1099
      ||||||||||||| ||||| ||||||||||||||    | |||| |||||
seq2  GGATCGTTTGTTC-AGCTCTTACGAGGTCACTGA----GGTGTGACCCGC  1089

seq1  AGAAGATGGGCAGGGATGGGATACAGGAAAGGCACTGAGTTTATTGGTAG  1149
      || |||| | |||| |||| ||||||  ||||||||||  | || | |||
seq2  AG-AGAT-GCCAGGAATGGAATACAG--AAGGCACTGA--TAATGGTTAG  1133

seq1  -CTTGCATTTCTATTCCAAGCCAGCCAA-TAGTG  1181
       |||||||||||  | |||||||||||| |||||
seq2  CCTTGCATTTCTTATTCAAGCCAGCCAAGTAGTG  1167

seq1: chr16_91511645_91512189
seq2: B6Ng01-270M14.g_67_611 (reverse)

seq1  CGCTCTTCCCCTGTCCCTCCCCCTCTCGCTCTCCCCCACCCCTGTGTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTTCCCCTGTCCCTCCCCCTCTCGCTCTCCCCCACCCCTGTGTGTC  50

seq1  TGCTGTGCTGTACACATGGGTGTGCACACTCCTGAGCAGGAATGTGAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGCTGTACACATGGGTGTGCACACTCCTGAGCAGGAATGTGAGTA  100

seq1  CACAGGTGTCACACATGTCCGTACCCATGCGCACATGTGAAGGTAAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTGTCACACATGTCCGTACCCATGCGCACATGTGAAGGTAAACAT  150

seq1  AGGATGTTGTCCTCCACCCTATCGTCTTGAAACAAGACCTCTCACAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTTGTCCTCCACCCTATCGTCTTGAAACAAGACCTCTCACAGGAG  200

seq1  AGGAAGCTCACCATTCTGCCTTAGCTGGTTGACCAGTAAGCTCTGGGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCTCACCATTCTGCCTTAGCTGGTTGACCAGTAAGCTCTGGGAAT  250

seq1  CTCCCTGTCTGTGCCCAATGCTAGGACTGGGTATGAACAGTGAAGTCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGTCTGTGCCCAATGCTAGGACTGGGTATGAACAGTGAAGTCTGG  300

seq1  CTTTTTTGTTAGGTATTGGAGGTTTGTACTCAGGACTTCACACTTGCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTGTTAGGTATTGGAGGTTTGTACTCAGGACTTCACACTTGCACA  350

seq1  CCAAGCACTTGTCCGGTGGGCAGTGTCCCCAGGCCCCATTCAGCTTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCACTTGTCCGGTGGGCAGTGTCCCCAGGCCCCATTCAGCTTTTTC  400

seq1  TTACAACTCTTCTCAGGCTTACAGTGATCACAGAATTGCTGGTCTTGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAACTCTTCTCAGGCTTACAGTGATCACAGAATTGCTGGTCTTGAGG  450

seq1  GCATGCGTAATACACATGGATTTCTGTGATGGAATGCTTTTTTACTGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCGTAATACACATGGATTTCTGTGATGGAATGCTTTTTTACTGGGA  500

seq1  TAAGTCTTTTTCTCCACCTGGAGGAACAAAGGCAAGAAGGAATTC  545
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCTTTTTCTCCACCTGGAGGAACAAAGGCAAGAAGGAATTC  545