BAC Information

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BAC

Clone NameB6Ng01-271J04
Chromosome16 (Build37)
Map Location 27,979,639 - 28,113,101
singlet/doubletdoublet
Overlap genenone
Upstream geneGm606, Ostn, Uts2d, Ccdc50
Downstream geneFgf12, 1600021P15Rik, EG666717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271J04.bB6Ng01-271J04.g
ACCGA073616GA073617
length7491,114
definitionB6Ng01-271J04.b B6Ng01-271J04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,979,639 - 27,980,387)(28,111,979 - 28,113,101)
sequence
gaattccatttaggtttttcttaaccttgaatgtatgttgcagagactaa
gtcatggagaatgtgggaaaaaaaattccctatttgtatgtgtgctttgt
ccccagcaagtacgcaaaggctcttgagaaaaactgtgatgttattcaca
cagagacacgtgccttcttctgggatccatgtgagttctgaagcagcatt
acttcgtatgatggtgaagatttatacactactagcagatatgcagatgc
caccagacccttatcacttctgtggagcagcataaggagcttctgttcgg
ctcttctatttccttcttcagcattctcacccctctccaggcactagaaa
taacttaatagtgagactttcccttaggatttcaagctgaagaagtgaaa
aacttaatctaactcatcatttgtaatgtcagcgattggtcatcggcaaa
cacttcagatataatttaagtggagagtggtttatggcttatggttttga
tccaaggacaactgtatataacccttccagccttaggtaagagactatca
gtggaaggagacagaggcaaaagttcttcacttcatagtggccagagttc
agcgagggaagcaaagacagttgaaaaaacactacggacacattcccagt
gacccacgggacacaaacaccaaaacctccatttcatcccaagaattcta
tcaaaccaattccacacacaatggtgtgtgtgtgtgtgtgtgtgtgtgt

gaattcagaggcattttttctaagcagagcaattcagtcagaagcagaga
ggagccaatttgaatcaggttggagaggaatttgaaacagaatagctgag
ttgaaccagccagacacagttcagaaagagatagaaagtatgagattatc
cagcagtaattcttaaaggctgaaacactctagcactaggttagcagatg
aggctggaagttcaagccttcaaggtctgaccttttaggagattagattg
tatggaggctagaagactttgggcctctagttagaacaaagaatgcaatg
ctctgggtgcagctcagtattggcatagcttgggtatgactctcatttca
tcacttcatttgaggaaataaaagtgacatagatttgttcatctatagat
ccaaaaacaaatgcttttttatattgaccctatgaatttaggaatctcat
agacgattatgatggacaaagtctatgcaaactaaatccaaaatcataaa
aaaattcaaaaaacatatacagcttagatattcttgcagttatactcaag
taatcagaatactttattagagtgaatatttaattcttggaataggcctg
aaggcagtttagtttttttatgcatataattagttgtatgcctttgcatt
tttcccaaatagtccatttctagtacttttctctgcaggaatctattcaa
attaataaaaggaagatttgggttttatctttccattattccaacatatt
aaaatccagcatcaaagcaagaaggaagagatatgacacactcttcttaa
ttacagatgatgatcacaaagcctacatttttcttttcttggtgtctgtc
tcttagttctctatacaactggcagatgatattatagttactaagagtca
ggcagtacccagaaagcaagaaaaagactaaccatgaatatttgttagat
tcatttggctcataacttctgtagtttcactgtgtctctatttagtttct
gtttcatgatctgtctatgatgaggagtgggggtattgagttctccacta
tattgtgtggggtgtgatgtgtgctgacataaaaaggtttcttttatgaa
tgtggatgccttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_27979639_27980387
seq2: B6Ng01-271J04.b_46_794

seq1  GAATTCCATTTAGGTTTTTCTTAACCTTGAATGTATGTTGCAGAGACTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTAGGTTTTTCTTAACCTTGAATGTATGTTGCAGAGACTAA  50

seq1  GTCATGGAGAATGTGGGAAAAAAAATTCCCTATTTGTATGTGTGCTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGGAGAATGTGGGAAAAAAAATTCCCTATTTGTATGTGTGCTTTGT  100

seq1  CCCCAGCAAGTACGCAAAGGCTCTTGAGAAAAACTGTGATGTTATTCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCAAGTACGCAAAGGCTCTTGAGAAAAACTGTGATGTTATTCACA  150

seq1  CAGAGACACGTGCCTTCTTCTGGGATCCATGTGAGTTCTGAAGCAGCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACACGTGCCTTCTTCTGGGATCCATGTGAGTTCTGAAGCAGCATT  200

seq1  ACTTCGTATGATGGTGAAGATTTATACACTACTAGCAGATATGCAGATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCGTATGATGGTGAAGATTTATACACTACTAGCAGATATGCAGATGC  250

seq1  CACCAGACCCTTATCACTTCTGTGGAGCAGCATAAGGAGCTTCTGTTCGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGACCCTTATCACTTCTGTGGAGCAGCATAAGGAGCTTCTGTTCGG  300

seq1  CTCTTCTATTTCCTTCTTCAGCATTCTCACCCCTCTCCAGGCACTAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTATTTCCTTCTTCAGCATTCTCACCCCTCTCCAGGCACTAGAAA  350

seq1  TAACTTAATAGTGAGACTTTCCCTTAGGATTTCAAGCTGAAGAAGTGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTAATAGTGAGACTTTCCCTTAGGATTTCAAGCTGAAGAAGTGAAA  400

seq1  AACTTAATCTAACTCATCATTTGTAATGTCAGCGATTGGTCATCGGCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAATCTAACTCATCATTTGTAATGTCAGCGATTGGTCATCGGCAAA  450

seq1  CACTTCAGATATAATTTAAGTGGAGAGTGGTTTATGGCTTATGGTTTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCAGATATAATTTAAGTGGAGAGTGGTTTATGGCTTATGGTTTTGA  500

seq1  TCCAAGGACAACTGTATATAACCCTTCCAGCCTTAGGTAAGAGACTATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGACAACTGTATATAACCCTTCCAGCCTTAGGTAAGAGACTATCA  550

seq1  GTGGAAGGAGACAGAGGCAAAAGTTCTTCACTTCATAGTGGCCAGAGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGGAGACAGAGGCAAAAGTTCTTCACTTCATAGTGGCCAGAGTTC  600

seq1  AGCGAGGGAAGCAAAGACAGTTGAAAAAACACTACGGACACATTCCCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAGGGAAGCAAAGACAGTTGAAAAAACACTACGGACACATTCCCAGT  650

seq1  GACCCACGGGACACAAACACCAAAACCTCCATTTCATCCCAAGAATTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCACGGGACACAAACACCAAAACCTCCATTTCATCCCAAGAATTCTA  700

seq1  TCAAACCAATTCCACACACAATGGTGTGTGTGTGTGTGTGTGTGTGTGT  749
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCAATTCCACACACAATGGTGTGTGTGTGTGTGTGTGTGTGTGT  749


seq1: chr16_28111979_28113101
seq2: B6Ng01-271J04.g_65_1178 (reverse)

seq1  GCAAGGGCATCCACATTCATAAAAGAAACCTTACTAATGCTCCAAGCACA  50
      |||| |||||||||||||||||||||||||||  | ||| ||  ||||||
seq2  GCAA-GGCATCCACATTCATAAAAGAAACCTT-TTTATG-TC--AGCACA  45

seq1  CATCACACCCCACACAATAATAGTGGGAGACTTCAATA-CCCCACT-CTC  98
      |||||||||||||||||| ||||| |||||  |||||| ||||||| |||
seq2  CATCACACCCCACACAAT-ATAGT-GGAGAACTCAATACCCCCACTCCTC  93

seq1  ATCAATAGACAGATCATGGAAACAGAAACTAAATAGAGACACAGTGAAAC  148
      ||| ||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATC-ATAGACAGATCAT-GAAACAGAAACTAAATAGAGACACAGTGAAAC  141

seq1  TAACAGAAGTTATGAGCCAAATGAATCTAACAAATATTTCATGGTTAGTC  198
      | |||||||||||||||||||||||||||||||||| |||||||||||||
seq2  T-ACAGAAGTTATGAGCCAAATGAATCTAACAAATA-TTCATGGTTAGTC  189

seq1  TTTTTCTTGCTTTCTGGGTACTGCCTGACTCTTAGTAACTATAATATCAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTGCTTTCTGGGTACTGCCTGACTCTTAGTAACTATAATATCAT  239

seq1  CTGCCAGTTGTATAGAGAACTAAGAGACAGACACCAAGAAAAGAAAAATG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGTTGTATAGAGAACTAAGAGACAGACACCAAGAAAAGAAAAATG  289

seq1  TAGGCTTTGTGATCATCATCTGTAATTAAGAAGAGTGTGTCATATCTCTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTTTGTGATCATCATCTGTAATTAAGAAGAGTGTGTCATATCTCTT  339

seq1  CCTTCTTGCTTTGATGCTGGATTTTAATATGTTGGAATAATGGAAAGATA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTGCTTTGATGCTGGATTTTAATATGTTGGAATAATGGAAAGATA  389

seq1  AAACCCAAATCTTCCTTTTATTAATTTGAATAGATTCCTGCAGAGAAAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAAATCTTCCTTTTATTAATTTGAATAGATTCCTGCAGAGAAAAG  439

seq1  TACTAGAAATGGACTATTTGGGAAAAATGCAAAGGCATACAACTAATTAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGAAATGGACTATTTGGGAAAAATGCAAAGGCATACAACTAATTAT  489

seq1  ATGCATAAAAAAACTAAACTGCCTTCAGGCCTATTCCAAGAATTAAATAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATAAAAAAACTAAACTGCCTTCAGGCCTATTCCAAGAATTAAATAT  539

seq1  TCACTCTAATAAAGTATTCTGATTACTTGAGTATAACTGCAAGAATATCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTAATAAAGTATTCTGATTACTTGAGTATAACTGCAAGAATATCT  589

seq1  AAGCTGTATATGTTTTTTGAATTTTTTTATGATTTTGGATTTAGTTTGCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTATATGTTTTTTGAATTTTTTTATGATTTTGGATTTAGTTTGCA  639

seq1  TAGACTTTGTCCATCATAATCGTCTATGAGATTCCTAAATTCATAGGGTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTTGTCCATCATAATCGTCTATGAGATTCCTAAATTCATAGGGTC  689

seq1  AATATAAAAAAGCATTTGTTTTTGGATCTATAGATGAACAAATCTATGTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAAAAAGCATTTGTTTTTGGATCTATAGATGAACAAATCTATGTC  739

seq1  ACTTTTATTTCCTCAAATGAAGTGATGAAATGAGAGTCATACCCAAGCTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTATTTCCTCAAATGAAGTGATGAAATGAGAGTCATACCCAAGCTA  789

seq1  TGCCAATACTGAGCTGCACCCAGAGCATTGCATTCTTTGTTCTAACTAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAATACTGAGCTGCACCCAGAGCATTGCATTCTTTGTTCTAACTAGA  839

seq1  GGCCCAAAGTCTTCTAGCCTCCATACAATCTAATCTCCTAAAAGGTCAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAAAGTCTTCTAGCCTCCATACAATCTAATCTCCTAAAAGGTCAGA  889

seq1  CCTTGAAGGCTTGAACTTCCAGCCTCATCTGCTAACCTAGTGCTAGAGTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAAGGCTTGAACTTCCAGCCTCATCTGCTAACCTAGTGCTAGAGTG  939

seq1  TTTCAGCCTTTAAGAATTACTGCTGGATAATCTCATACTTTCTATCTCTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCCTTTAAGAATTACTGCTGGATAATCTCATACTTTCTATCTCTT  989

seq1  TCTGAACTGTGTCTGGCTGGTTCAACTCAGCTATTCTGTTTCAAATTCCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACTGTGTCTGGCTGGTTCAACTCAGCTATTCTGTTTCAAATTCCT  1039

seq1  CTCCAACCTGATTCAAATTGGCTCCTCTCTGCTTCTGACTGAATTGCTCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACCTGATTCAAATTGGCTCCTCTCTGCTTCTGACTGAATTGCTCT  1089

seq1  GCTTAGAAAAAATGCCTCTGAATTC  1123
      |||||||||||||||||||||||||
seq2  GCTTAGAAAAAATGCCTCTGAATTC  1114


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