BAC Information

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BAC

Clone NameB6Ng01-272B05
Chromosome16 (Build37)
Map Location 75,592,487 - 75,711,829
singlet/doubletdoublet
Overlap geneRbm11
Upstream geneLOC665042, D930038D03Rik
Downstream geneStch, LOC546667, Samsn1, 4930578N18Rik, LOC100039457, Nrip1, LOC100039316
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272B05.bB6Ng01-272B05.g
ACCGA073991GA073992
length1,0941,153
definitionB6Ng01-272B05.b B6Ng01-272B05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,592,487 - 75,593,612)(75,710,672 - 75,711,829)
sequence
gaattcctactactccaccaaacaaagaccaaatcaagttctcattactg
aatgatctttccagggtgattccaaggtcctttcgggaactttttttttt
taatgactcatttatacacagtgttttcttgagttcagtgcccttttcag
agcccacagaaaaatttcaaagacctatctcggtattacttaaaggctaa
ataaactttaattttagtcttttcttgtatcagtagccatacacggagac
atttcttttcatgctataacttaacttcacagcgttactgatctaccaat
ttaactctttggaagcaaattaattttttatatctccccctaggcacgtc
gatactgaagttagtcaatctgaatatcaacttcctagtcattgtatttc
caacgttgcttaaaaaaaaaaaaaagcaaactaaaatcacccattaatct
tgttcataaagaggtagaagcactgtgccaagtggacgactgatgccctc
aggtcagtaagtcagtctttctagtcagggagggcggggctgcgaggtgg
tgggcgggtcccgcgggacggtgggcgtgacttcacgccccgcccctggc
gcgcgcccgcctcgggctccgctgcccaggcggagccgcgcagtaaagcg
gagcgaggggggcggggcttcggcacctcctccatccctggctgcggacc
gcagggatgttcccggctcaggaggaggctgacaggaccgtgtttgtggg
caatttagaggcccgagtgcgggaagagattctttacgagctgttccttc
agtaccgtccgcggggaaggccgggcggcggctgcggagccccgggaccc
cgcccaccggagctccgctctccttcctcgcttagctcgcaagtgtgcag
ccggggatgagcggctcgtactctccttcctctgcagccccagtgggcaa
cgactcccacccccaccccaccctggcagcccagcagactccgagctctc
gggccctgatgtgctgcggaacacgaccacccgtcactgtcctaccggat
ggtagcaccttctgtcactgaaatggcacctgcgagaagatact

gaattcccttgataacttccatgtgcttcctttctggcctctgaccatga
gcttcccacttttccattgctcgactaagcatctccctttttctacggca
gcttcttcagtatttatggctggtgatggatcttcctaaccttgattctc
tagccacatagccgtttacatagacacttatcactctgaaatcccttcaa
gcatcccccttttatatttattcactgtcatctcagtagactttgtgtgg
taagtaaagtaaatgatccactcagtcattttaaactgggagcaaagcac
actccttaaacatcgagcttggaaaatgcagcatccatattttacatgtt
cgagaaaggggaactcctaaaggtaagatataaagctcaatagatgagta
tgtgcaggctgtccctgaaaatcaaaagcaaagagctgagacctagtaga
aaaaaatgttcagggctatttctttcttccaagatgagctgagatcttta
ttgttgttataaaatataaatgtaaaggtttctgcttcagtagttcaatt
ttgttgaatgttaggcttctaggatattcatagtaaacctctactatgaa
tacatgaaagttgcacttgggctttaaatatgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgcctttctgagtttatgggcattgcatacatgcagaagctc
aaagagacctgtagaagaaatagttccccaaaattgatattaaatgtgag
cctcttgttgtgagttctgggaactgaactgggtcccttgcaagaagaat
aagcttttcatttactgcggaaccacctctctggccccatttttctgtta
agttcttttttttttttttaattaattgagctaagtgacactagggagcc
tttcattggatcaagtttcatcagatgtagctatgctaggcgttcttgaa
tgaaaagtaagaaattcattgtcttcacttaagaacactttctattataa
aatgtatttcatttgtttagaaacatccttacttagcatatagaagagat
tcgaatgttaagtttaaaggatgacaattagagttgtgtatgtgttccaa
tgactgcagccatgcctaggcagcagtcagctaattcaggaggaaattcc
tta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_75592487_75593612
seq2: B6Ng01-272B05.b_45_1138

seq1  GAATTCCTACTACTCCACCAAACAAAGACCAAATCAAGTTCTCATTACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACTACTCCACCAAACAAAGACCAAATCAAGTTCTCATTACTG  50

seq1  AATGATCTTTCCAGGGTGATTCCAAGGTCCTTTCGGGAACTTTTTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCTTTCCAGGGTGATTCCAAGGTCCTTTCGGGAACTTTTTTTTTT  100

seq1  TAATGACTCATTTATACACAGTGTTTTCTTGAGTTCAGTGCCCTTTTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACTCATTTATACACAGTGTTTTCTTGAGTTCAGTGCCCTTTTCAG  150

seq1  AGCCCACAGAAAAATTTCAAAGACCTATCTCGGTATTACTTAAAGGCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCACAGAAAAATTTCAAAGACCTATCTCGGTATTACTTAAAGGCTAA  200

seq1  ATAAACTTTAATTTTAGTCTTTTCTTGTATCAGTAGCCATACACGGAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTTTAATTTTAGTCTTTTCTTGTATCAGTAGCCATACACGGAGAC  250

seq1  ATTTCTTTTCATGCTATAACTTAACTTCACAGCGTTACTGATCTACCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTTCATGCTATAACTTAACTTCACAGCGTTACTGATCTACCAAT  300

seq1  TTAACTCTTTGGAAGCAAATTAATTTTTTATATCTCCCCCTAGGCACGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCTTTGGAAGCAAATTAATTTTTTATATCTCCCCCTAGGCACGTC  350

seq1  GATACTGAAGTTAGTCAATCTGAATATCAACTTCCTAGTCATTGTATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGAAGTTAGTCAATCTGAATATCAACTTCCTAGTCATTGTATTTC  400

seq1  CAACGTTGCTTAAAAAAAAAAAAAAGCAAACTAAAATCACCCATTAATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGTTGCTTAAAAAAAAAAAAAAGCAAACTAAAATCACCCATTAATCT  450

seq1  TGTTCATAAAGAGGTAGAAGCACTGTGCCAAGTGGACGACTGATGCCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATAAAGAGGTAGAAGCACTGTGCCAAGTGGACGACTGATGCCCTC  500

seq1  AGGTCAGTAAGTCAGTCTTTCTAGTCAGGGAGGGCGGGGCTGCGAGGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGTAAGTCAGTCTTTCTAGTCAGGGAGGGCGGGGCTGCGAGGTGG  550

seq1  TGGGCGGGTCCCGCGGGACGGTGGGCGTGACTTCACGCCCCGCCCCTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCGGGTCCCGCGGGACGGTGGGCGTGACTTCACGCCCCGCCCCTGGC  600

seq1  GCGCGCCCGCCTCGGGCTCCGCTGCCCAGGCGGAGCCGCGCAGTAAAGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGCCCGCCTCGGGCTCCGCTGCCCAGGCGGAGCCGCGCAGTAAAGCG  650

seq1  GAGCGAGGGGGGCGGGGCTTCGGCACCTCCTCCATCCCTGGCTGCGGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGAGGGGGGCGGGGCTTCGGCACCTCCTCCATCCCTGGCTGCGGACC  700

seq1  GCAGGGATGTTCCCGGCTCAGGAGGAGGCTGACAGGACCGTGTTTGTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGATGTTCCCGGCTCAGGAGGAGGCTGACAGGACCGTGTTTGTGGG  750

seq1  CAATTTAGAGGCCCGAGTGCGGGAAGAGATTCTTTACGAGCTGTTCCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTAGAGGCCCGAGTGCGGGAAGAGATTCTTTACGAGCTGTTCCTTC  800

seq1  AGGTACCGTCCGCGGGGAAGGCCGGGCGGCGGCTGCGGAGCCCCGGGACC  850
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-GTACCGTCCGCGGGGAAGGCCGGGCGGCGGCTGCGGAGCCCCGGGACC  849

seq1  CCGCCCCACCGGAGCTCCGCTCTCCCTTCCCTCGCTTAGGCTCGCAAGTG  900
      ||| |||||||||||||||||||||  | ||||||||| |||||||||||
seq2  CCG-CCCACCGGAGCTCCGCTCTCC--TTCCTCGCTTA-GCTCGCAAGTG  895

seq1  TGCAGCCGGGGATGAGCGGCTCGTACTCTCCTTCCTCTGCAGCCCCGGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  TGCAGCCGGGGATGAGCGGCTCGTACTCTCCTTCCTCTGCAGCCCC-AGT  944

seq1  GGGCAACGACCTCCCACCCCCCACCCCCCACCCTGGCAGCCCCAGGCCAG  1000
      ||||||||| ||||||||||   | |||||||||||||| |||||  || 
seq2  GGGCAACGA-CTCCCACCCC---CACCCCACCCTGGCAG-CCCAG--CA-  986

seq1  GACTCCCGGAGCCTCTCCGGGCCCTGGATGTGCTGCGGGAACACGAAACA  1050
      ||||||  ||| |||| |||||||| |||||||||| ||||||||  || 
seq2  GACTCC--GAG-CTCT-CGGGCCCT-GATGTGCTGC-GGAACACG--ACC  1028

seq1  ACCCCGTCACTGTCCTCACGGGATAGTAAGCACCCTTCTGTCCAACCTAG  1100
      | |||||||||||||| || |||| || |||| |||||||||  ||    
seq2  A-CCCGTCACTGTCCT-ACCGGATGGT-AGCA-CCTTCTGTC--AC---T  1069

seq1  AAAATGGCACCTGCGAGAAAGATACT  1126
       |||||||||||||||| ||||||||
seq2  GAAATGGCACCTGCGAG-AAGATACT  1094


seq1: chr16_75710672_75711829
seq2: B6Ng01-272B05.g_65_1217 (reverse)

seq1  TAAGG-ATTTCCTCCTG-ATTGGCTGGCTTGCTG-CTAAGCATTGCTTGC  47
      ||||| ||||||||||| ||| |||| | ||||| ||| |||| || |||
seq2  TAAGGAATTTCCTCCTGAATTAGCTGAC-TGCTGCCTAGGCATGGC-TGC  48

seq1  AGTCATTG--ACACATACACATTTTCTAATTTGTCAT-CTTTAACTTTTA  94
      ||||||||  |||||||||||   ||||| ||||||| ||||||  || |
seq2  AGTCATTGGAACACATACACA-ACTCTAA-TTGTCATCCTTTAAACTTAA  96

seq1  CATTTCGAATCTCTTCTATATGCTAAGTAAGGATTGTTTTCTAAACAATT  144
      || |||||||||||||||||||||||||||||||   ||||||||||| |
seq2  CA-TTCGAATCTCTTCTATATGCTAAGTAAGGAT--GTTTCTAAACAAAT  143

seq1  GAAAATTACATTTTTTATAATAGGAAAGTGTTCTTTAAGTGAAAACATTG  194
      ||||  ||||  |||||||||| |||||||||| ||||||||| ||| ||
seq2  GAAA--TACA--TTTTATAATA-GAAAGTGTTC-TTAAGTGAAGACAATG  187

seq1  AATTTCTTACTTTTCATTCAAGAACGCCTAGCATAGCTACATCTGATGAA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTTACTTTTCATTCAAGAACGCCTAGCATAGCTACATCTGATGAA  237

seq1  ACTTGATCCAATGAAAGGCTCCCTAGTGTCACCTTAGCTCAATTAATT--  292
      ||||||||||||||||||||||||||||||| ||||||||||||||||  
seq2  ACTTGATCCAATGAAAGGCTCCCTAGTGTCA-CTTAGCTCAATTAATTAA  286

seq1  AAAAAAAAAAAAGAACTTAAACAGAAAAATGGGGCCAGAGAGGTGGTTCC  342
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAGAACTT-AACAGAAAAATGGGGCCAGAGAGGTGGTTCC  335

seq1  GCAGT-AATG-AAAGCTTATTCTTCTTGCAAGGGACCCAGTTCAGTTCCC  390
      ||||| |||| |||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAAATGAAAAGCTTATTCTTCTTGCAAGGGACCCAGTTCAGTTCCC  385

seq1  AGAACTCACAACAAGAGGCTCACATTTAATATCAATTTTGGGGAACTATT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCACAACAAGAGGCTCACATTTAATATCAATTTTGGGGAACTATT  435

seq1  TCTTCTACAGGTCTCTTTGAGCTTCTGCATGTATGCAATGCCCATAAACT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTACAGGTCTCTTTGAGCTTCTGCATGTATGCAATGCCCATAAACT  485

seq1  CAGAAAGGCACACACACACACACACACACACACACACATATTTAAAGCCC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGGCACACACACACACACACACACACACACACATATTTAAAGCCC  535

seq1  AAGTGCAACTTTCATGTATTCATAGTAGAGGTTTACTATGAATATCCTAG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCAACTTTCATGTATTCATAGTAGAGGTTTACTATGAATATCCTAG  585

seq1  AAGCCTAACATTCAACAAAATTGAACTACTGAAGCAGAAACCTTTACATT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTAACATTCAACAAAATTGAACTACTGAAGCAGAAACCTTTACATT  635

seq1  TATATTTTATAACAACAATAAAGATCTCAGCTCATCTTGGAAGAAAGAAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTATAACAACAATAAAGATCTCAGCTCATCTTGGAAGAAAGAAA  685

seq1  TAGCCCTGAACATTTTTTTCTACTAGGTCTCAGCTCTTTGCTTTTGATTT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTGAACATTTTTTTCTACTAGGTCTCAGCTCTTTGCTTTTGATTT  735

seq1  TCAGGGACAGCCTGCACATACTCATCTATTGAGCTTTATATCTTACCTTT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGACAGCCTGCACATACTCATCTATTGAGCTTTATATCTTACCTTT  785

seq1  AGGAGTTCCCCTTTCTCGAACATGTAAAATATGGATGCTGCATTTTCCAA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTCCCCTTTCTCGAACATGTAAAATATGGATGCTGCATTTTCCAA  835

seq1  GCTCGATGTTTAAGGAGTGTGCTTTGCTCCCAGTTTAAAATGACTGAGTG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGATGTTTAAGGAGTGTGCTTTGCTCCCAGTTTAAAATGACTGAGTG  885

seq1  GATCATTTACTTTACTTACCACACAAAGTCTACTGAGATGACAGTGAATA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATTTACTTTACTTACCACACAAAGTCTACTGAGATGACAGTGAATA  935

seq1  AATATAAAAGGGGGATGCTTGAAGGGATTTCAGAGTGATAAGTGTCTATG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAAAGGGGGATGCTTGAAGGGATTTCAGAGTGATAAGTGTCTATG  985

seq1  TAAACGGCTATGTGGCTAGAGAATCAAGGTTAGGAAGATCCATCACCAGC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACGGCTATGTGGCTAGAGAATCAAGGTTAGGAAGATCCATCACCAGC  1035

seq1  CATAAATACTGAAGAAGCTGCCGTAGAAAAAGGGAGATGCTTAGTCGAGC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATACTGAAGAAGCTGCCGTAGAAAAAGGGAGATGCTTAGTCGAGC  1085

seq1  AATGGAAAAGTGGGAAGCTCATGGTCAGAGGCCAGAAAGGAAGCACATGG  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAAAGTGGGAAGCTCATGGTCAGAGGCCAGAAAGGAAGCACATGG  1135

seq1  AAGTTATCAAGGGAATTC  1158
      ||||||||||||||||||
seq2  AAGTTATCAAGGGAATTC  1153


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