BAC Information

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BAC

Clone NameB6Ng01-272H14
Chromosome16 (Build37)
Map Location 6,188,962 - 6,313,333
singlet/doubletdoublet
Overlap geneA2bp1
Upstream geneNagpa, AU021092, Alg1, 5730409G15Rik, LOC100042436, LOC100042445
Downstream genenone
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272H14.bB6Ng01-272H14.g
ACCGA074291GA074292
length1,1681,097
definitionB6Ng01-272H14.b B6Ng01-272H14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,312,164 - 6,313,333)(6,188,962 - 6,190,064)
sequence
gaattcaaactatggactacatgattgtacagcatagccaccaactcagt
ccccaacagtttttttttcagaagcagtatttgatctctccttgcaccga
ctgttccctttccttctgcattgtttgtaaagagttccaaaggctctcca
ccttcccgattcaaacccatgtaatctataaacagcaacagtttagaaaa
ggcaagactgtctctctgtgccccaaccacgctccctattttctttgtca
atgtagcttcatataaaatcatctacatatctgctgaaattaggttatga
aaatgtattttccctcctttttctcattaaatcgtgatcaaatttaaaat
gcctacaaatggctgctttttctctcaactcaaaaatgaaatacgttcta
tagaatgaggttggaaatagagactacaaatgtgtttctcatttgggaaa
cacttaatagggtgtaatggtggagagcagaaagaatcttcagaatttac
acaagataagcatgtgttctgcatgtctttcgttgtatagtgacggcctg
caagacagctctgagtccgtgccaccccctctctgccactatagatgctg
gagtccaagttaggtttgaagaacatcagcaacaaacctgcatgtggttt
tgcgtgttggagggtggagatggggagccagttcagtaagtagagtgctt
gccttataagacctgagttcctgagtctgatacccagaatccacatacaa
aagctagttgttgtgatagagacttgtaattttagttctgcagtgtggag
acaagcagatgccttgggctcattgaacaaccagcctagacttcctggga
agctccaggccaaagagaaaccctatctcataaattaaaataaaataaaa
taaaataaaatctacagagtgagttccaggacagccagggattatacaga
gaaaccctgcctcgaaaaaaaaatgaaatcttaaataaaacaatttggaa
aaggacaggcggccatcttggggaatggatactggagtaacttctgggct
tctcttggcatctaacaggttggaacaattagaaggtacttatgtccaaa
ctggcctccgagggcccatgggcaatcctttgcatagacagcttgtgtgt
gttcatggttgtgtgctg

gaattcatctgtgctcggcaagaatatgctgaatatgctgtgattgatta
gaagtgtcttgcagcaacacagagggtggagtgaagtcttctattctact
ctagactggaaggcattttcccttgtgatcatagacggggaacgatttct
tctagagattgtatgtacttgtcttggtgactaaacatctctgtgaatta
ggttcatgttattgtcaaacaagagagaaaaatgtcatctcatagtccca
ggagcatgttaccattcagatggcattacttatcagacttctaaccaact
cttttttcagcatgatggtttaattgtaggaattttattcttgtgaattc
acctagggaattctgtttttatgaggctcaatccatttattgcattggat
tctgcagtagattttagtgttaaatgtaagaaaaacacagggggcatggc
ttgagtccatccagttcagaaaaagcaagttagaatggaatctagtggct
ttccacagctttaaatattggggtcacaagtgtaggatatttgtgttgta
tgcttctgtttcatactttaattcttctaaatagaaattatatcagagaa
gagatgagaggaaggtgcagaaatatactctcagtaaatagacctaggga
aaatgacattcctttaactgattctattaatcataacaagagatgtagta
aaatataattaaataaagattaaataaaatggaagatatagaagaatagc
ttacctgccttgtgatactttatagtttactgagccttgactgtttttct
tttttatttgctttggtttgttttgggtattgtgtgttttcatggacttg
tactgaatgctaagtggacagatggagggggtctgtgctggataaaaagt
tacagggctgtcagagttaagtcaacatctttgaagcatgcctcttggca
gttgtgaattttctgacactctgagctcctgtctcttcatctgacagtgg
atatgcaagcaggctcaagctctattagaggtcagatattttctagtttc
cctctatttgctaggattctatgaatcattgtttttatagatggttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_6312164_6313333
seq2: B6Ng01-272H14.b_43_1210 (reverse)

seq1  CAGCACACA--CATGCACACACACAAACTTGTCTATGCAAAAGGGATTGC  48
      |||||||||  |||| |||||||||| | ||||||||||||  |||||||
seq2  CAGCACACAACCATGAACACACACAAGC-TGTCTATGCAAA--GGATTGC  47

seq1  CCATGTGGGCCTCTGGAGGCCAGTTTTTGACATTAAGTAACTTTCTTAAT  98
      ||||| || |||| ||||||||| ||| |||| |||||| |||   ||||
seq2  CCATG-GGCCCTC-GGAGGCCAG-TTTGGACA-TAAGTACCTT--CTAAT  91

seq1  TGTTTCCAACCTG-TAGATGCC-AGAG-AGGCCAGAAGTTAACCTCAGGT  145
      || |||||||||| |||||||| |||| || ||||||||||  |||  ||
seq2  TG-TTCCAACCTGTTAGATGCCAAGAGAAGCCCAGAAGTTA--CTCCAGT  138

seq1  ATCCAT--CCCCAGATGGCCGCCTGT-CTTTTTCAAATTG-TTTATTT-A  190
      ||||||  ||| |||||||||||||| ||||| ||||||| ||||||| |
seq2  ATCCATTCCCCAAGATGGCCGCCTGTCCTTTTCCAAATTGTTTTATTTAA  188

seq1  GATTTCATTTTTTTTTTCGAGGCAGGGTTTCTCTGTAT-ATCCCTGGCTG  239
      ||||||| |||||||||||||||||||||||||||||| |||||||||||
seq2  GATTTCA-TTTTTTTTTCGAGGCAGGGTTTCTCTGTATAATCCCTGGCTG  237

seq1  TCCTGGAACTCACTCTGTAGATTTTATTTTATTTTATTTTATTTTATTTT  289
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCCTGGAACTCACTCTGTAGATTTTATTTTATTTTATTTTATTTTAATTT  287

seq1  ATGAGATAGGGTTTCTCTTTGGCCTGGAGCTTCCCAGGAAGTCTAGGCTG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATAGGGTTTCTCTTTGGCCTGGAGCTTCCCAGGAAGTCTAGGCTG  337

seq1  GTTGTTCAATGAGCCCAAGGCATCTGCTTGTCTCCACACTGCAGAACTAA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCAATGAGCCCAAGGCATCTGCTTGTCTCCACACTGCAGAACTAA  387

seq1  AATTACAAGTCTCTATCACAACAACTAGCTTTTGTATGTGGATTCTGGGT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACAAGTCTCTATCACAACAACTAGCTTTTGTATGTGGATTCTGGGT  437

seq1  ATCAGACTCAGGAACTCAGGTCTTATAAGGCAAGCACTCTACTTACTGAA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGACTCAGGAACTCAGGTCTTATAAGGCAAGCACTCTACTTACTGAA  487

seq1  CTGGCTCCCCATCTCCACCCTCCAACACGCAAAACCACATGCAGGTTTGT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCCCCATCTCCACCCTCCAACACGCAAAACCACATGCAGGTTTGT  537

seq1  TGCTGATGTTCTTCAAACCTAACTTGGACTCCAGCATCTATAGTGGCAGA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATGTTCTTCAAACCTAACTTGGACTCCAGCATCTATAGTGGCAGA  587

seq1  GAGGGGGTGGCACGGACTCAGAGCTGTCTTGCAGGCCGTCACTATACAAC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGTGGCACGGACTCAGAGCTGTCTTGCAGGCCGTCACTATACAAC  637

seq1  GAAAGACATGCAGAACACATGCTTATCTTGTGTAAATTCTGAAGATTCTT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACATGCAGAACACATGCTTATCTTGTGTAAATTCTGAAGATTCTT  687

seq1  TCTGCTCTCCACCATTACACCCTATTAAGTGTTTCCCAAATGAGAAACAC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCTCCACCATTACACCCTATTAAGTGTTTCCCAAATGAGAAACAC  737

seq1  ATTTGTAGTCTCTATTTCCAACCTCATTCTATAGAACGTATTTCATTTTT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTAGTCTCTATTTCCAACCTCATTCTATAGAACGTATTTCATTTTT  787

seq1  GAGTTGAGAGAAAAAGCAGCCATTTGTAGGCATTTTAAATTTGATCACGA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGAGAGAAAAAGCAGCCATTTGTAGGCATTTTAAATTTGATCACGA  837

seq1  TTTAATGAGAAAAAGGAGGGAAAATACATTTTCATAACCTAATTTCAGCA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGAGAAAAAGGAGGGAAAATACATTTTCATAACCTAATTTCAGCA  887

seq1  GATATGTAGATGATTTTATATGAAGCTACATTGACAAAGAAAATAGGGAG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGTAGATGATTTTATATGAAGCTACATTGACAAAGAAAATAGGGAG  937

seq1  CGTGGTTGGGGCACAGAGAGACAGTCTTGCCTTTTCTAAACTGTTGCTGT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGTTGGGGCACAGAGAGACAGTCTTGCCTTTTCTAAACTGTTGCTGT  987

seq1  TTATAGATTACATGGGTTTGAATCGGGAAGGTGGAGAGCCTTTGGAACTC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGATTACATGGGTTTGAATCGGGAAGGTGGAGAGCCTTTGGAACTC  1037

seq1  TTTACAAACAATGCAGAAGGAAAGGGAACAGTCGGTGCAAGGAGAGATCA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAAACAATGCAGAAGGAAAGGGAACAGTCGGTGCAAGGAGAGATCA  1087

seq1  AATACTGCTTCTGAAAAAAAAACTGTTGGGGACTGAGTTGGTGGCTATGC  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGCTTCTGAAAAAAAAACTGTTGGGGACTGAGTTGGTGGCTATGC  1137

seq1  TGTACAATCATGTAGTCCATAGTTTGAATTC  1170
      |||||||||||||||||||||||||||||||
seq2  TGTACAATCATGTAGTCCATAGTTTGAATTC  1168


seq1: chr16_6188962_6190064
seq2: B6Ng01-272H14.g_68_1164

seq1  GAATTCATCTGTGCTCGGCAAGAATATGCTGAATATGCTGTGATTGATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTGTGCTCGGCAAGAATATGCTGAATATGCTGTGATTGATTA  50

seq1  GAAGTGTCTTGCAGCAACACAGAGGGTGGAGTGAAGTCTTCTATTCTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTCTTGCAGCAACACAGAGGGTGGAGTGAAGTCTTCTATTCTACT  100

seq1  CTAGACTGGAAGGCATTTTCCCTTGTGATCATAGACGGGGAACGATTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTGGAAGGCATTTTCCCTTGTGATCATAGACGGGGAACGATTTCT  150

seq1  TCTAGAGATTGTATGTACTTGTCTTGGTGACTAAACATCTCTGTGAATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGATTGTATGTACTTGTCTTGGTGACTAAACATCTCTGTGAATTA  200

seq1  GGTTCATGTTATTGTCAAACAAGAGAGAAAAATGTCATCTCATAGTCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATGTTATTGTCAAACAAGAGAGAAAAATGTCATCTCATAGTCCCA  250

seq1  GGAGCATGTTACCATTCAGATGGCATTACTTATCAGACTTCTAACCAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATGTTACCATTCAGATGGCATTACTTATCAGACTTCTAACCAACT  300

seq1  CTTTTTTCAGCATGATGGTTTAATTGTAGGAATTTTATTCTTGTGAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTCAGCATGATGGTTTAATTGTAGGAATTTTATTCTTGTGAATTC  350

seq1  ACCTAGGGAATTCTGTTTTTATGAGGCTCAATCCATTTATTGCATTGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGGAATTCTGTTTTTATGAGGCTCAATCCATTTATTGCATTGGAT  400

seq1  TCTGCAGTAGATTTTAGTGTTAAATGTAAGAAAAACACAGGGGGCATGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGTAGATTTTAGTGTTAAATGTAAGAAAAACACAGGGGGCATGGC  450

seq1  TTGAGTCCATCCAGTTCAGAAAAAGCAAGTTAGAATGGAATCTAGTGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCCATCCAGTTCAGAAAAAGCAAGTTAGAATGGAATCTAGTGGCT  500

seq1  TTCCACAGCTTTAAATATTGGGGTCACAAGTGTAGGATATTTGTGTTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAGCTTTAAATATTGGGGTCACAAGTGTAGGATATTTGTGTTGTA  550

seq1  TGCTTCTGTTTCATACTTTAATTCTTCTAAATAGAAATTATATCAGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTGTTTCATACTTTAATTCTTCTAAATAGAAATTATATCAGAGAA  600

seq1  GAGATGAGAGGAAGGTGCAGAAATATACTCTCAGTAAATAGACCTAGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAGAGGAAGGTGCAGAAATATACTCTCAGTAAATAGACCTAGGGA  650

seq1  AAATGACATTCCTTTAACTGATTCTATTAATCATAACAAGAGATGTAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACATTCCTTTAACTGATTCTATTAATCATAACAAGAGATGTAGTA  700

seq1  AAATATAATTAAATAAAGATTAAATAAAATGGAAGATATAGAAGAATAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAATTAAATAAAGATTAAATAAAATGGAAGATATAGAAGAATAGC  750

seq1  TTACCTGCCTTGTGATACTTTATAGTTTACTGAGCCTTGACTGTTTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGCCTTGTGATACTTTATAGTTTACTGAGCCTTGACTGTTTTTCT  800

seq1  TTTTTATTTGCTTTGGTTTGTTTTGGGTATTGTGTGTTTTCATGGACTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTGCTTTGGTTTGTTTTGGGTATTGTGTGTTTTCATGGACTTG  850

seq1  TACTGAATGCTAAGTGGACAGATGGAGGGGGTCTGTGCTGGATAAAAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAATGCTAAGTGGACAGATGGAGGGGGTCTGTGCTGGATAAAAAGT  900

seq1  TACAGGGCTGTCAGAGTTAAGTCAACATCTTTGAAGCATGCCTC-TGGCA  949
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TACAGGGCTGTCAGAGTTAAGTCAACATCTTTGAAGCATGCCTCTTGGCA  950

seq1  GTTGTGAATTTCTTGACCACTCTGAGCTCCTGTCTCTTCATCTGACAGTG  999
      |||||||||||  ||| |||||||||||||||||||||||||||||||||
seq2  GTTGTGAATTTTCTGA-CACTCTGAGCTCCTGTCTCTTCATCTGACAGTG  999

seq1  GATATGCAAGCAGTCTCAAGCTCTATTAGAAGTCAGGGATATTTTCTAG-  1048
      ||||||||||||| |||||||||||||||| ||||  |||||||||||| 
seq2  GATATGCAAGCAGGCTCAAGCTCTATTAGAGGTCA--GATATTTTCTAGT  1047

seq1  TTCCCTCTATTTGCCTAAGAATTCTATGAATTCATTGTTTTTAATAGATG  1098
      ||||||||||||||   || |||||||||| ||||||||||| |||||||
seq2  TTCCCTCTATTTGC--TAGGATTCTATGAA-TCATTGTTTTT-ATAGATG  1093

seq1  AGTTG  1103
       ||||
seq2  -GTTG  1097


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